RNA id: XM_026925444.2


Basic Information

Item Value
RNA id XM_026925444.2
length 1769
RNA type mRNA
GC content 0.46
exon number 6
gene id si:ch211-227n13.3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21611776 ~ 21615292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTATCCAGCagggggacacacacacacacacatcatgacTGCTCAGCCTGTTTGTGCCATGAAGAAGAAGAGTGGCAGTAGCGGAGCTGTTTGAAAGCAGAGGTAGAGGAGTGCTGGGGATTTCTCTCAGGAATGATGCTGATGAAGCGGTAAATCCACGCTGTGAAACCAGACAGATTCATAATCCAGATGTGGGGATGGACTGCAGAAGGAAGAAAATAGCCTTACCTGTGGGGTCAAAGGCTGAAGATACACTGAAAACGCTCTGGATGACCAAAGACACTTCAGGCCACATGTGTTTATCTGACAGTCTGTCTAAGTCTTGTGCTGAGAGTCCACTGGACGGCTCAGGTTCTGAAGACTCTGTGGTGTCGGGCCCCAGCTCACCTTCTGCTGCCCTTCATTCACTGAGATGCAGGAAGTGTGAGAGACTTTTCTCCAAAATGAGGAGACAAGGGCctccaagaaaaaaacaaagagacgACGATCCAGCCTCGCTGTCATGTGACGAGTGGCTGCTTAATAAAACATGGCAGCCACAGAGACAGCAGCAACCCCGAGGGAGGTTATGGGTGCACTTGAAGCGCATCAGGCTACGAGCTGCAAAGCAGTCAGACGATGCCATGGCGAATAAAGCATGGTCACGCTCTGCTCGAGACCTCACGTGTTCCTGCAGAGGAACTTGCGTCGCTGCAAAAAGATGTTTGGAAAGCCATCTAAAAGCAAAGCGAAGCCACTCCATCAGCGGAGAAATCGAGCAAAACCTACATGGCCCCTGCGCAGTGCAAAatatcagagaaagaaaaggaagtcCTCAGAGAAAGACGATACATCGGAGCATCTTTCACCGGTGGATCTCGACATTCCCACGAAACATGATTTGCCTGCAAATGacaacactcacactcaccatGAGGGTTTGCAGCGGTTGGAGAAAGTTCCCAAGAACCAGTCTGTCAGTGATGTGAGTGGCTTGATGGACATCCAGGCTAATTGCAGTGGAGTGGAGGGAACTCGTAGGGTGCTGAAATTTGACGCTTCTCCCAGTGCTGTGCTAGCTGAAACACAGAAACCAAAGCACCGCCTTGTACATAAGAATGCAGGAGAAAAATTACATGAAGGCCAAGCAGATTTCACAGTGAAGAATAAAGATTGTCCCAGAAGGCTAGATGATGTTCTGTATGAGGATTTGGAGGTGTTTCGGACACCGACGGATCTCTTCAGTGCGGATTTGAAGATCAGCAGGAAGAGCAGGCCATCGCGTCCGTTTGGCGCACGGAAAGACAGCTTCAGGACCATGTTGGCTGCACTTGGGCAGGGTCATAACCAGATTATTAAGGAGTCCCATCACTGATGCTTTTgcagaaaatgtaaaagttatagtttttttttttgtaatttagtGTTACAATTTCAGACTGCACGCCAGTCTATGTATTCAGCTTGTTCAGCCTGTATGTCTATTGTCCGATACCTTTCCAAGATACAATTTGTGTTTTGCATGAAGACTGTACTAAACGCTCCCAGACTTTGCACCACATGTGCTTACAGGACCTATTTATTAACTGTAGGAAATGTTAAAAGACTATTCAAAGGCTGGCATCAAGTCACAGTGTTTGTGGGAGTGAGAATAGCAGTGACTTTATAGAAGACtagtttaaaaacatgtttaattgtAAATGTTATTGCATAAAGTACTTTTTTGGATTTCTTTAGTCATGTTCTCATTTTTCgttgctaaaaaaataaatacagtttaataGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219890 lncRNA upstream 51397 21560167 ~ 21560379 (+) True G185751
TU219622 lncRNA upstream 123249 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 144838 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 165296 21444384 ~ 21446480 (+) True G185519
TU219570 lncRNA upstream 201984 21407479 ~ 21409792 (+) True G185503
TU220105 lncRNA downstream 405556 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 763601 22378893 ~ 22381003 (+) False pcdh17
TU220165 lncRNA downstream 766106 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 813566 22428858 ~ 22429104 (+) True G186046
TU220233 lncRNA downstream 940157 22555449 ~ 22899731 (+) True G186060
XM_026918527.2 mRNA upstream 5862 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA upstream 5863 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA upstream 5863 21561057 ~ 21605913 (+) False slc4a10a
XM_026918544.2 mRNA upstream 5863 21568537 ~ 21605913 (+) True slc4a10a
XM_026914564.2 mRNA upstream 52774 21554701 ~ 21559002 (+) True tbr1a
XM_026923268.2 mRNA downstream 897 21616189 ~ 21622277 (+) True nxph2b
XM_026921504.2 mRNA downstream 141298 21756590 ~ 21770086 (+) True lims1
XM_026921496.2 mRNA downstream 141298 21756590 ~ 21768721 (+) False lims1
XM_026921487.2 mRNA downstream 141298 21756590 ~ 21766584 (+) False lims1
XM_034308953.1 mRNA downstream 697150 22312442 ~ 22381020 (+) True pcdh17
XR_004579103.1 other upstream 401237 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1460882 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1740313 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1777362 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1911502 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 343596 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2317574 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2318840 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2319343 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2321725 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile