RNA id: XM_026926009.2


Basic Information

Item Value
RNA id XM_026926009.2
length 2046
RNA type mRNA
GC content 0.45
exon number 5
gene id si:ch211-247n2.1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18719224 ~ 18741759 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttattgcctGGGCTATGATGTTCATGTGGCaatcagtttttgttttcttaatgatttaatgtattgttcatttatttgattgctcagtcacaaacacacataatgaATGGAACATTTTTGTAGGCAAGTTCTGattacaccaatcagccatggCCGTAGCCATCATAAAAAGCTGCTCGAAATCAGTCAAATGACTATCTGCAATCTGGATTAGGTAACATACAAGATTACACTGGACAAAGTCTTcaactttttttctgtagtcTTTTGCCATCAAAATAGATTTAATGAAATGGGGTGTTcatctaaaaatgtttttaaaaacatattacacTTTCCTGAGCACAGCTGCAAAACTATAATCATATACTGTAATGCAGTAGCCTTAGTGCAGCTCATAATGCAAGACTTTTTTGGCGGCTTGGCATGTGCGTCAGAGCAGACTCTAATTTATCACTGTTGTTGTTTAAAGCTTATTACCCTACTGTCGTTCTGCCTCAGAATGACCTAGGCCTAAATGAGGAAGATTAACAGCCTGCTGAGTGGATTCCCAACCAGAGGCTGGACTGGAAGAACCAATTGATAGCCTCTGTCAAAAGCCCTCCCCTCCTGCCCACAAAACAATATTGACAAATGTGTGTGGGGCGCTTGTCCCAGGAGTGACATGTCAGTCTTTTATTGCCAGTTAGTCTGGCCTGCTGACTAATCTATTGACAGAAGTCTGACCATGCTTAAAGCGCTGGAGTAATGGCTGCTTCTTACTGCGACTGCACCTCATCCTATACCTGCCAGAAACAACTGTACGAATGCAGATTATCCCAGCAGTCCTTGGCGAGTACGTTAGAGAGTGCTGGGAGGATGTTCCTGTGGGCTGGAACTAAAGGACCTCAGggatcaggaaatgaaagaagAACCATTTATCAGAAGATCAGAGAATATGACATTCTGGACAAGAGGAAGACTGTGACAGCACTGAAAGCAGGAGAGGACAGAGCTATTCTCCTTGGTCTTAGCATGATCTTCTTTTCTGTCATGATGTACTTTGTCCTGGGCATTACAATGGTGCGGTCATATACAGACAGTGTGTGGACAGAGGAGTCAAGCTGTACCGTgctaaattcaactattattggGGAGATTAACTGTAGCTACAGCTGTGGTGCAGAATGCTGGAAGAGTTCCAGATACCCATGCCTGCAGGTGTACGTCAGCCTGAACTCATCAGGCCGAATCCTGAGACTGTCCCACAACGAGGAAGCCCAGGAGGCCAATCCTGAGTGTTTCTTTGTCCCTAAGTGCCGTAAGGATCACGCAACGATGCATGCCTTGGTACTGAACATCTCCGAGCGCCTGAAGGTCCAGCAGCAGGTGCGTTGTTACTCAGACCCAGCAGAGCAGCAGGACAGTGCCATCCTGACACGCCTCTATGGTCGTGCTGCCATTCTCTCATCACTGCTGTGGCCCACGTGCATGCTTGTGATTGGCGTGCTCATCGTTGCCATGGTCAAGCTCACACAATACCTTTCCATCCTCTGTGAGCGGATAAGCCGCATTAAGAGGTGAGCCAGACTGCCATTGAGCCTTGAGATGGATCagtggaaagagagaggaaatagagtgaaaagtgaaagagagtGACAACTCTCTAACCACTATGTTCCTCGCAGGACTGGTCTTTCTCCAGTTGCATCTGCCTCGCACTCCATGGAGGGCACTAAAAACATGTTGGATGGGATTTGAATGGAAAAGCGTCCAAGATGAAAGGTCAAAAGGGAAACAATGGACAGATTCTTTGGCTGAACCCAGTTTTCTACACCTCTATAAGCAGCACAATCTTTTAAAGACTAGAGAGACTAATGACCAATGGTGTTTTATGTGCCTCTGCCCTCCTGTCAACTTTGTTCATCAATCCATGTTGTGGTGACAAGGAAGGACATTTGACTTGGACAATGTCGAGCTTTACCAGGACTGAAATTTGTGGCTGGAATTGTACAGCACAGGTTGGGTGAAgtccaaatgaataaaatctaaGCGTCAAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217565 lncRNA upstream 124489 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 132171 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 140695 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 159452 18568625 ~ 18569959 (+) True G183805
TU217556 lncRNA upstream 291450 18429506 ~ 18437961 (+) True G183787
TU217958 lncRNA downstream 149480 18891239 ~ 18894875 (+) True G184167
TU218141 lncRNA downstream 270648 19012407 ~ 19012612 (+) True G184309
TU218173 lncRNA downstream 339493 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 718059 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 720065 19461824 ~ 19462843 (+) True G184503
XM_034308905.1 mRNA upstream 58044 18666576 ~ 18671367 (+) True LOC117598435
XM_026914759.2 mRNA upstream 178257 18427082 ~ 18551154 (+) True si:ch211-51h4.2
XM_034308949.1 mRNA upstream 178257 18460802 ~ 18551154 (+) False si:ch211-51h4.2
XM_034308548.1 mRNA upstream 320354 18190616 ~ 18409057 (+) True LOC113526284
XM_034308977.1 mRNA upstream 595430 17933916 ~ 18133981 (+) False nlgn1
XM_034308934.1 mRNA downstream 22340 18764099 ~ 18783878 (+) True pik3ca
XM_034308959.1 mRNA downstream 45212 18786971 ~ 18794580 (+) True LOC113531757
XM_026915196.2 mRNA downstream 93414 18835173 ~ 18842544 (+) True LOC113527405
XM_026926658.2 mRNA downstream 106794 18848553 ~ 18852369 (+) True ctbs
XM_026918120.2 mRNA downstream 123371 18865130 ~ 18877076 (+) True uox
TU217312 other upstream 932792 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 947598 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 977909 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 980120 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1093016 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 513198 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 790322 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 808623 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 953485 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 1086227 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile