Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034308564.1 |
| length | 1163 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 7 |
| gene id | zgc:113223 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 20105710 ~ 20120596 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218828 | lncRNA | upstream | 160447 | 19954594 ~ 19955040 (+) | True | G184900 |
| TU218810 | lncRNA | upstream | 168004 | 19921471 ~ 19947483 (+) | True | G184882 |
| TU218759 | lncRNA | upstream | 270687 | 19844047 ~ 19844800 (+) | False | LOC113534304 |
| TU218741 | lncRNA | upstream | 306233 | 19808713 ~ 19809254 (+) | True | G184823 |
| TU218615 | lncRNA | upstream | 411237 | 19703635 ~ 19704250 (+) | True | G184718 |
| TU218933 | lncRNA | downstream | 144579 | 20264936 ~ 20265620 (+) | True | G184988 |
| TU218932 | lncRNA | downstream | 145351 | 20265708 ~ 20320904 (+) | True | G184987 |
| TU218936 | lncRNA | downstream | 146242 | 20266599 ~ 20271344 (+) | True | LOC117598445 |
| XR_004579121.1 | lncRNA | downstream | 147189 | 20267546 ~ 20294374 (+) | False | LOC117598445 |
| TU218987 | lncRNA | downstream | 310772 | 20431129 ~ 20431338 (+) | True | G185042 |
| XM_026920781.2 | mRNA | upstream | 12435 | 20076613 ~ 20103052 (+) | True | apc2 |
| XM_026926350.2 | mRNA | upstream | 144140 | 19969557 ~ 19971347 (+) | True | gadd45ba |
| XM_026929071.2 | mRNA | upstream | 150930 | 19959701 ~ 19964557 (+) | True | LOC113535596 |
| XM_026929380.2 | mRNA | upstream | 204278 | 19904158 ~ 19911209 (+) | True | ctns |
| XM_026924845.2 | mRNA | upstream | 244024 | 19865798 ~ 19871463 (+) | False | ccl44 |
| XM_026920096.2 | mRNA | downstream | 33627 | 20153984 ~ 20163045 (+) | True | sgta |
| XM_026920083.2 | mRNA | downstream | 42858 | 20163215 ~ 20170408 (+) | True | LOC113530255 |
| XM_026922496.2 | mRNA | downstream | 51533 | 20171890 ~ 20181242 (+) | True | slc1a8a |
| XM_026919781.2 | mRNA | downstream | 427902 | 20548259 ~ 20563932 (+) | True | tmem259 |
| XM_034308874.1 | mRNA | downstream | 596174 | 20716531 ~ 20717902 (+) | True | sid1 |
| XR_003403385.2 | other | upstream | 244024 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 281073 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| TU218602 | other | upstream | 415213 | 19695244 ~ 19700274 (+) | True | rps15 |
| TU218488 | other | upstream | 561965 | 19532081 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218923 | other | downstream | 29614 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_004579103.1 | other | downstream | 1069429 | 21189786 ~ 21210539 (+) | False | wipf2a |
| trnap-agg_1 | other | downstream | 1838531 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 3812509 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 3813775 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
