RNA id: XM_026927363.2


Basic Information

Item Value
RNA id XM_026927363.2
length 3365
RNA type mRNA
GC content 0.40
exon number 5
gene id rab3b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15088240 ~ 15096387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATACGTCATTAACATCATCAACTTCTCCACTCTGAAAAAGTACCTTTAATATGTCTTTCACCTGGAGGTGTGAATGTAGtgtacttttaaaatgtttaaggtAATTAATTAGCTTATAGAGTATAGCTTTAGAGATACATggacctttctaggtaaaagagacatactaaaggtacaaaagatgtaggCTTGATGGTACAACCACAGTGACAAGGACTGGTACAGTTTACTTCGCTGTATCTGGGAGTGTATAGTACTAAGTAGGCTAGTATGGCGAAACAGTAGCCTCTACCCTGTGGTTGTGTATCATTGTGACTTGGGAAAAGTACACCTTGGCTCAAAATTTCGGATGAAAGGAAAACTTTCGATTCGTTCGTACTTGCGAATCGATTCACTCGACCcattcaaaatatttcagacgGAAACGATTCGTCCAAAACGGTTCGTCTCCGATCAGTGCAGTCCGCCCCCACCTAGAAGGAAGGACGGAGGGAAGCAGCGCTCACACACTCGAGATGGCGAAAGCAGATCACCGCTTCGGACAAAGAGATGGCTCTGACCAGAACTTTGACTACATGTTCAAGCTTCTCATTATAGGCAACAGCAGCGTAGGCAAAACCAGCTTCCTATTCCGATATGCAGACGACTCCTTCAGCAACTCATTTGTCAGCACCGTTGGCATTGACTTCAAAGTAAAAACAGTTTACCGCAATGACAAGAGGGTCAAACTCCAAATCTGGGATACAGCAGGTCAGGAGCGTTACAGGACCATCACCACAGCTTACTACAGAGGAGCAATGGGCTTCATTCTCATGTATGACATCACTAATGAGGAGTCGTTTAATGCAGTACAGGATTGGGCAACCCAGATTAAGACCTACTCATGGGACAATGCTCAGGTTATTTTAGTGGGAAATAAATGTGACATGGCTGATGAGAGAGTGATACCTGTGGAGAAAGGCAAGCACTTGGCTGATCAACTAGGCTTTGAGTACTATGAGGCGAGTGCCAAGGAAAACATCAACGTCAGGCAGGTGTTCGAGCGCCTGGTGGACATCATCTGTGTGAAAATGTCTGAGCGAGTGGACACAGACCCGTCCATGGTCAGTGGAGCTAAGACCACTCGGCTTAGTGACAAGCCGACGCAGCTACCTCAGAATTGCTGCTGATTTAGCCTGTTTACTCTGCTGTCACGTGCTAGACTATTGTGCTGATCCTGTCTTTTCATCTGCTTTCCATTTCCATCaaaatagcctttttttttattccttacatagtagTGTTACATATATAGTTTACTGTTAACGCTATACTGTCACTTTAAACACACCTCTAACTAAGGGTCAGAGTGAGGTcaaagcagggactccagcaaagCACAAAAAAGCACATGCTCACTGCCAGACACAGATAACTCACATGAGTAAATCAGACCTCAACAGGTGTATTATTCTAGCATAATCGGTGCTTTAAAGATCACCTAACACAATCTCTCTGCTTCTTTTCTTCAATAATTGCTCAGTGAAAGAGCACAAGTGTGACCTAAACTCAAGACAACTGCAGAGTGGCCATAACAGTTATATATTATGCACAATAATGGTCTGTTGTTTCAGGGTGGTTTTGATGCTCTGTTTTTTAACTTGGCAGAACCACTGGCTGGTGGGTTCTTATAAAGTTATTTCACTGCCAGAAGTCAAGAGCACAATAGTTTTGATAGGTCATCAAGCTTCCTTTCACTCTTGCTCATATTTAATTTGCTGTCATAACAATATAGATGTCCAGGCTCAAATCTGTCCTGCTTGGCTGAGTGTGGCAACAAAAAAGCACTCACCCTACCGTTGGGAGTTTGCGAGTCCAGATCTACATataatgccacagccatccatgatTGGGAGTCTAACAGACCATAAATAACCATCTCATTATCAtttgtgggcatctgtgagctcatgtatggaAAAAAGAGCAGACaccactttcctctgagtgtgttcaacTGCCATGTGACAGTACATGAGCAGCAGCTCAAAAAAGATGTAATGGGTACACATGtatcagaggaagcatgtgcaaCTCTTCACCCtcattgtgtaaatatttttaaaaaatgggggAAACAATCACATCCTGCTCACTCTCAAACATTTTACTCTCACATGGTCAGATTTCCTTTCTGTTGTACATCATTTTTTAGTGCCTGTCAATGTTTAATGGTTCTTGATATTGATAACTGACCACTCCAACTGCCCGGCGTCAGCAATATGGTGTCAGAATGGGAGGAGCTTATCTTGATTTCCTCCTACTATTAAAAATGTAGAGAAGGCCATCAGCTGAAAcccaatctgattggctgacgaATTTCGGCAGTGTTGTTGCACCAAAGTATGAAAAAAGGAAACCTAAAACGGGTGAGCACAAAAAGTATAAGTGAGCCAGATGAATTTAACTTGTAACTTGTACATGTACACATGTATTATTGTATGAGAGTTGAAGTAACCTGCGTAATCATTGCATATCCTACTAACTGCTACAGAAGCTAATGCGCTCTCCATTTTTGGCAATAAAATAACGCCATAGGTTCCTTTGAATACCTATAATGGGCAcaatataatgtgtgtttttggacATATGGAGCACTTTGCAACTGTTcaatgtatcatgatatatcaAAGGTAGTTTAGTACTTGCATGAAGCCAAGTAGCCTACAAATAGtcttacaaaacaaaaatcaaatcCCTACATGTTCTCTTGCATAAAAGTGAGTATTTTCTtgtggaatatatatatatatatatatataactatatatatgaatgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtacTGACTGTATTCAGCCGTAAAGTGACATTCAGGTTGTTACTGCACATATTTACGCTTCATTTACAGTGacaacacattaaaaatatctttagaGATGCCAGTATATGTATATTGTAAAACTTGTGCCACGACTGATTTATATTTCAGAAACGTAGCAGATCCTTGTGGAGTTCTACATGTATCACATACATTGAGTTTTCAATCAAGTGATGTTAGCATTTATGAACAATGTTTTATGTAACTACTtcgaaatttattttacatgaaatatttataattaagaTGTTGTAAGCTATCAAGCTGGTCTTTGCTGagtagatatttatttttatgctatAACCGAAGCTGGGAACATATAGATGTACTGTAACTTTGCTGTCAGTGATTTTTGACTGGTAGAAAGATTTGCACAAGGATATAGAGTGATTGTACAGATCATTGTAAAAGTTGGTTTTAGATGCAATTTGTAACAATAAAAGTACCACTCACACCATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06108 RAB3B; Ras-related protein Rab-3B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214970 lncRNA upstream 1920 15085901 ~ 15086320 (+) True G181632
XR_003403448.2 lncRNA upstream 86007 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA upstream 86007 14994688 ~ 15002233 (+) False LOC113533733
TU214923 lncRNA upstream 110689 14960885 ~ 14977551 (+) True G181599
TU214912 lncRNA upstream 157378 14867927 ~ 14930862 (+) True G181588
TU215238 lncRNA downstream 196851 15293238 ~ 15294067 (+) True G181851
TU215210 lncRNA downstream 202861 15299248 ~ 15308946 (+) False G181824
TU215211 lncRNA downstream 207949 15304336 ~ 15308946 (+) True G181824
TU215365 lncRNA downstream 276371 15372758 ~ 15372970 (+) True G181944
TU215366 lncRNA downstream 276833 15373220 ~ 15383177 (+) True G181945
XM_034308424.1 mRNA upstream 2858 15080920 ~ 15085382 (+) True atpaf1
XM_034309001.1 mRNA upstream 8473 15050189 ~ 15079767 (+) True frem1b
XM_026923150.2 mRNA downstream 2928 15099315 ~ 15114363 (+) True nrd1b
XM_026913059.2 mRNA downstream 18663 15115050 ~ 15126124 (+) True axdnd1
XM_026912512.2 mRNA downstream 35620 15132007 ~ 15148372 (+) False tdrd5
XM_026912494.2 mRNA downstream 35620 15132007 ~ 15148372 (+) False tdrd5
XM_026912503.2 mRNA downstream 35900 15132287 ~ 15148372 (+) True tdrd5
XR_004579090.1 other upstream 376513 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 441418 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 493625 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 525274 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 914022 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 1158676 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1483849 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1486916 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1816871 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1933485 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile