RNA id: XM_026927592.2


Basic Information

Item Value
RNA id XM_026927592.2
length 1631
RNA type mRNA
GC content 0.44
exon number 10
gene id hcn5
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21029394 ~ 21036574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGACATGTGCTACCTCcattgtttgtttgcttttctccTGATTCTCCTGACCAGGGAATAAGTGGTGGTTGATAGCCGAAGGACACACTGGAAAGAGGAGTTACTACATAATGTGCATGGTGGCCATAACCTTTCTGAACCTCATTGGGATCCCGATAGAGATTGCTTTTTTAGATGGTCAAGGCGGAGTGGGCTGGGAGGGATTTAATGTCTTCTCAGATACTCTGTTCCTTGTAGACGTCGGACTCAACTTTCGTATGGGGATCATTTCCGAGGACAACGAGGCGGCCATTCTCGATCTGAAATCCATTcgacaaaattatttaaagagtTGGTTTATACCAGACATGATCGCGGCATTTCCAGTGGGTTACATCCTTCTAATTGCGGATCTGCAATATCATGGTGATTCTCCATCTTCTAAAGCCAGTAAAATGGTGCGGATCCTTATGTTCGTGCGGATCCTCAGCCTGGTGCGTCTGCTGCGTGTCTCTCGCCTGGTTCGCTTCTTTAATGAAGTGGAGAAAGTGTCGAATGCCAACCTGGAAGTAGTTCGAGTTTTGTTCAGAATCCTGTCCCTGTTCATGATGATTTTTCTGCTGTGCCACTGGAACGGTTGTGTGCAGTATTTTGTTCCAATGCTGGAAGAGTTTCCATCAGACTGCTGGGTTCGACGAGAAAATCTCATGAACGCTACAGTGGGAGAGAAATATTCCTTTGGTGTCTTTCGTGCACTCTCACATATGACGGCAATATCATACGGTTCCTCTGACACACCTACAAATGAGGTAGAGCTGTGGATTGTCATGACCAGCATTGTATCAGGAGCTCTAATGTACACAGTGCTGGTTGCCAACACAGTCGCTCTGATGACTGACACAGACCTCACTGCAAAAGCATACAAGAACAAGTTGAATCATCTGGAAGACTATATGACCTCCATGAAGCTTCCCAAAGAGCTGCGTATTCGCATCAGTAATTACTTTCAGGCTCGCTTTGGGGGAAAGTGGTATGATGAAAAGGATGTACTAAACTGGGTGTCTTCATCCATTAAGGAGGAGATTTTGATGATCATGTGCTCGGGCCTTGTGAGAAGAGTCCCCTATCTTTCGCAATTGTGAAACAAACTTCATCAATGCCATCCTTTTCCATCTGCAATATGAGGTTTTTCAAGAGGGTGACGTCATTGTATATCAGAACAGCCCTGGTGATCGCATGTTCTTCATCGAGCGTGGACAGGTCATGGTGGAGACAGAGAATTCTCAGATAGAGCTATGTGATGGGGGCTACTTTGGAGAGACATGTCTCATGACCAGAGGAAAACATCTGGCTACAGTTCGAGCTCAGACCATATGTCAAGTCTTTTCTCTGTCTGCAGACAGTTTTTACAAAGTGCTCGAAGACTACCCAGAGGCTTTGAAGAACATGAAGATAACAACCAAAGAGGCCATAAATTTTATTTGCTATCCTTGATTGTGATCTGAATGGAAAATCATATTTAGCACACTGGAGAGTGCCTATAAAAATTGCTCACCTTTTGTCTGTAAGAAAGAAAGGTTTTGTAGTCCTTACTTTATGGTAATGAACAGCACTCTTTTAGTTGTTTACgtttattgattttaaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219446 lncRNA upstream 4834 21002828 ~ 21024560 (+) True G185418
TU219404 lncRNA upstream 61493 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 132933 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 321367 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 461102 20568076 ~ 20568292 (+) True G185182
TU219472 lncRNA downstream 22490 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 40601 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 42098 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA downstream 42098 21078672 ~ 21084699 (+) False G185439
TU219482 lncRNA downstream 42098 21078672 ~ 21339714 (+) False G185439
XM_026920807.2 mRNA upstream 39973 20968735 ~ 20989421 (+) True chrna4b
XM_026920815.2 mRNA upstream 39973 20983032 ~ 20989421 (+) False chrna4b
XM_026912456.2 mRNA upstream 81603 20932742 ~ 20947791 (+) False elovl1b
XM_026912465.2 mRNA upstream 81603 20933212 ~ 20947791 (+) True elovl1b
XM_026912474.2 mRNA upstream 81603 20934989 ~ 20947791 (+) False elovl1b
XM_026915666.2 mRNA downstream 6726 21043300 ~ 21050473 (+) False txlng
XM_026915674.2 mRNA downstream 6887 21043461 ~ 21050473 (+) False txlng
XM_034308444.1 mRNA downstream 7431 21044005 ~ 21050473 (+) True txlng
XM_026930272.2 mRNA downstream 26843 21063417 ~ 21070097 (+) True zrsr2
XM_034308440.1 mRNA downstream 26942 21063516 ~ 21070097 (+) False zrsr2
TU218923 other upstream 878500 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1157931 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1194980 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1329120 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1475872 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 153212 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 922314 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2896292 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2897558 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2898061 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile