RNA id: XM_026927604.2


Basic Information

Item Value
RNA id XM_026927604.2
length 3503
RNA type mRNA
GC content 0.48
exon number 21
gene id ftsj3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13449459 ~ 13461109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTGATGTCATCTGTCTGCGCCGCAACAGTGCACGTGTGGGAAGTCGGACCTATTTAGAAGTGCTGCATTCGTCTCTTAGCTAACACATAATCTAtccaaaatggggaaaaagttaAAAGTCGGAAAGACTCGTAAAGATAAATTTTATCATTTGGCAAAGGAGACAGGCTACAGATCCCGTTCGTCCTTTAAGCTAATCCAGCTGAATCGTAAGTTCCAGTTTCTGCAGAAGGCGAGGGCTCTTCTGGACCTGTGTGCTGCTCCGGGAGGATGGTTACAGGTAGCATCCAAGTTCATGCCCGTGTCCAGTCTGATCATCGGAGTGGACCTGGTGCCCATCAGACCCATCCCCAACGTAGTCACGCTGCAGGAGGACATCACCACGGAGAAGTGCAGACAGGCTCTCAGGAAAGAGCTGCAGATGTGGAAAGTGGATGTGGTGCTGAACGACGGTGCCCCAAACGTCGGAGCTAACTGGCAGCATGACGCTTTCTCACAGGCACACTTGACCCTGATGGCTCTGAAGCTCGCCTGTGAGTTTCTCAACAAAGGAGGAACTTTCATTACCAAAGTTTTTCGTTCCAAAGACTACCAGCCACTCATGTGGATCTTTCAGCAGTTCTTTAAGAAAGTGCAGGCCACCAAACCACAGGCATCCCGTAACGAGTCCGCTGAGATCTTCGTCGTCTGCCAAGGTTTTCTGGCCCCTGACAAAATTGATAACAAATTTTTCGACCCAAAGCATGCCTTCAAAGAGGTGGAGGTCCAGGTAAAGACAGTAAAGGAGTTAACCACCACGAAGAAGCCTAAAgCAGAAGGCTACGCTGATGGAGATCTGACCCAGTATCACACATTCTCAGTTACGACGTTTTTACGAGCTGAGAACCCAGTGGACTTCCTGAGCAAAGCCAGTGAGATCACGTTTGATGATCCAGAGCTGGAGTCTCACACAGCTACATCTTCTGAAATTAAAGAATGCTGTAAAGATATCAAGGTTCTTGGAAGAAAAGAGCTGCGacTCTTGCTATCATGGAGATCCAAGCTGAGGAAGTTTTTAGCCAaaaagctgaaagaagaagCAAAGCAGCTGGACCAAGAGATCAGTCTGAGCTCCAGTGATGATGAAAGCGATGGAGAGAAACCCaggaagaagaaggaggtgGTGTATAAGAAAGAAGATGATGAGGctgaagatgaggatgaggacGAGGAGATGGAGAAGAAGCTGGCTGAGCTGAAGGCAGAGGAGATTGCAGAGCTGAAACGgaaaaagaagaagctCCTGAAAGAGCGACGGAAGCAGAGAGAGCGAGTGGAGCTGAAGATGGACCTGCCTGGTGTTTCCATCGCTGACGCCGGAGACTCGAGCATGTTCTCCCTCAACACCATCAGTAAAGCCAAGGACCTGAATGAGCTCACGCTGGGTGATATGACCGGAGCAGATGCCTTGGTGGACGATGAGGGAGAGGAGAACGTGCACATTTCCGAATCAGACAGTGACCTCGTCTCTCTGGCGTCAGACCTGGATGAAGACGACCTGGCCGAgatagaggagaaagagaagcagCTGAAGAAGCTTCCCAAGAAAAAGGTTTCCTTCACTGCagtggaggaggatgaggatgaagaggagcaGGGGAACAAACTGCTGGTGGATTTGGAGGGAAAGATTGAAAAGCAAGATCGACAGACCAGCATGTGGTTTAGCAAGGACATCTTCTCAGAGCTGGACCTCGATGGAGATGAAGACGCAATGAGGGAACTCAGACAGACCCAGTTCCTGCACGGCAAACAGGCTGCAGGAAAGGGCAAAAAGAGGAAGGCTGAAGAGAACACAGAGGCTGctcagaaagaggaggaggatgaggcaGCCACGCCCTCTCAGGAAGCAGAAGAGGCAGCGGGAGATGAAGAGGACAGCGATGACGACTCGTCTGGTGACAGCAGCGATGATGAGGAaGAAATAGCGAGGATGAAGCGTACCTCTGGGTCTGGTGAATTGCCTGGAGATGATGATGACTTTCAAGTAGTTCCTGTAGAGAGCACAAGTAAGCGTGCTCGGATCCTGGACGCTGAGGGTCTGGCTCTCGGTGCTCAGATCGCCACGTCCAAGAAGAGACGCAGGGACCTGATAGATGACTCCTTCCACAGGTTCTCCAGCTTGCAGGATACTGGTGAGATTCCAGTGTGGTTCTTAAATGACGAGaggaaacacagaaagaaacCCGTCCCTGTCACACGAGAGATGGTGGAGGAGTACAAGCAGAAGTGGAAGGAGATCAACGCACGTCCAATTAAGAGACTGGCAGAGGCCAAAGCTCGCAAGAAGAGAaggACGCTGAAGAAGATGGAGCAGGCCAAGAAGAAGGCTGAAGCGGTGGTCAACACAGTGGAcatctcagagagagagaagatggcACAGCTCAAAAGCATTTACAAGAAGGCTGGTGTGGGTAAGGAGAAGAGGGAAGTGACCTACGTCGTGGCCAAAAAGGGCGCTGGGCGTAAAATCCGCCGTCCCCCAGGAGTGAAGGGTGTCTTCCGTGTGGTGGATGGACGGATGAAGAAAGACCTCCGTGGCCAGCAGAAGAAAGATCAAAGAGACAAGGGGAAAGGGGGCAGGAAAGGAGGGAAGGGTGGAAGAGGGGGAAAGGCAGGTAAGGGGCatccaaacaggaaatgagggaGTGAAACTTGAGCATGAACTTCTCATCACACTCAGCTGGGACTGCTGTTAAAGAGCTGAGCTGTGCTGTGCTAAATCCAGGCTACATGGACTCTGTGGGCAGGATGATACACACAGGCCTGGATTTACTGTGAATGTGGTGATGTCATCACAGAATCTGCATTTTGTGCTGATCTGTGGtcagtttcatgttttttctaaTGAGTGACTGTTTCCCAATACAGAACCTTTAATCTGGCTGAGCTACACATTGTAGTGTTTTCCTGCTTGAACACACCTgatcattttgtccatttttatagatGACTGTTATACAGGAACAGGGGCCAGCATTTACGGTTTAGCCGTagcatttgagttttttttaccCCTTGTCTTTTGAATGAACATCCAAATTTGGGGCAAGGTATAaagttttatagatttattgttaaattataACTCAGATATTATGATTGCATAATAtctgcagaggtgccaacactGATGGTTTAGCCATAGTATTTATGGTTTAGCGGGTACAGAAGACACCAGACAActttgcttttctgctttttcatgtAAAACAGCCTTCGCAAGTCATTATGGCAGGAAAACCTGAAAATGTGCTTGATCTGATTTAAAGAAGTGGTTAATAATGAATAagatgcttgttttttttcacctgatGTCTCGAAGCCTCCTGATTGGAGGAGTTTTGATTGttgtataatattttgtctaaaATGTTCTTTGAACGTTTGAGTCATTTGAACTGTATATTGACACAGTTTCACGttaatattttcaattaaataaagtatcattcatgtca

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214147 lncRNA upstream 1275 13447945 ~ 13448184 (+) True G180926
TU214035 lncRNA upstream 43204 13401887 ~ 13406255 (+) True G180838
TU214029 lncRNA upstream 147162 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 164389 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA upstream 209876 13236477 ~ 13239583 (+) False aqp12
TU214166 lncRNA downstream 168586 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 636551 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 684764 14145873 ~ 14293381 (+) True G181157
TU214415 lncRNA downstream 761142 14222251 ~ 14240535 (+) False LOC113531387
TU214510 lncRNA downstream 899679 14360788 ~ 14361372 (+) True G181233
XM_026942260.1 mRNA upstream 19316 13426670 ~ 13430143 (+) True rpl36
XM_026923575.2 mRNA upstream 51684 13379796 ~ 13397775 (+) True LOC113532271
XM_034308819.1 mRNA upstream 81201 13319943 ~ 13368258 (+) True impact
XM_026927676.2 mRNA upstream 136012 13308441 ~ 13313447 (+) False cep19
XM_034308542.1 mRNA downstream 1171 13462280 ~ 13468477 (+) True lim2.2
XM_034308543.1 mRNA downstream 1171 13462280 ~ 13468477 (+) False lim2.2
XM_026924353.2 mRNA downstream 1172 13462281 ~ 13468477 (+) False lim2.2
XM_026946151.2 mRNA downstream 35569 13496678 ~ 13512874 (+) True gipc3
XM_026927615.2 mRNA downstream 722110 14183219 ~ 14187331 (+) True ticam1
TU214031 other upstream 143743 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 173903 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 175842 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 179730 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 181682 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 34481 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 703917 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1100581 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1128810 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1161434 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile