RNA id: XM_034308910.1


Basic Information

Item Value
RNA id XM_034308910.1
length 3011
RNA type mRNA
GC content 0.39
exon number 4
gene id cep19
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13308441 ~ 13313447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CacccatccattctctgtagcGCGTATCCTAAACAGAGTCGCGGGGAGACTGGAGActgtcccaggggactcagggcacaaggcgggggccacgctggacagggtgccaaccattaaagggcacaatcacacacacacacacacacattcacacactcagcttACGACGCATGTGTTTGgattgggggaggaaaccgcAGTACCTGGAGCACAGAgcagaggtgggaatcaaacccccaattATCCTAATTATGTGACAAGAAAAAAGAGTATAAAGTGGTAGGCATACATCATGCCTATAATAGCCAAACGATGTGGGATTAAGTTTGATCCACCTTCAGTCATCCTCATATATGAAAATGAACATACAGACAAGCTGCGTAAAAGAGTAATGCCAGTGAGGAACTTTTCAGAATACTCAGACTGCAGCAGGGCTGCAGAGAGACTGAAGCATCATCCCCATCACGCACATTACCTGGACTCAGTGTCACTGGAGCAGCTGGTGAGGTTATACACGGTGCTCCGGGATCACCTGCGAGGTCTCAGTGTGGAGGAGAGTCTGCAAGAACAGCGTCACTCTCACACCCATCAGGACGATCTCAACAAACTCAGTGACGAAGAGCTGAAACGCCGCAAAGCGCAAATGGACGTGCTGTTCGAGCTAAACCGGCGCCGCAAAGACGACCCAGACTTTGTGTACGACCTTGAGGTGGAGTTTCCTGAAAACAGCAGCCGGGAACCCTGCAGCTGGGACCAATCAGATGAAGAGTTTTGAAGAGCAGGACTGAGTTCCTCCATTCTAGGACACATGCATGACCAGAGGTTGTTTAATGAACAAAACGACATAGCAGGACAGCTGATCCGAGACCTGACCCCTCCTCTGAAACACTACTGAGAACACAGGCCTTGGTCATGGTGCTCAAGGGAACAAATTCTggttaaaagaaaaagtgcatcAAAGCTGGTGGAGGAAAAGTCCGATTCTGCCAAAACAGCAGCCGTTAGTACACACGTAACACAGATGAGCTGTTGTTCATCCGGATGGAGTTACAGAAGTAGTCACGTCATAAacacttttttcctctaaaGATACGACATCCAGCAGGACAGCTGCACATGGCATCTTTAACATTTACGTTCAAAATAAAATCCTCATAACTTAAATTCTTGCCGTGAATGTTTTTTTGAGGCATTAACAACATTTCagcatgtaaatattaaaaatgaagttGCAAGAACAATGATTTTGGTGCTTTGACTTCATTTAGCAAGAAATCCTATGTTGCTAATTCAGTagaagtgtgtatatatacacatgtaagCTTACACTTTccatagaaaataaaaataaaatagataccAGATTACTTGCAGTACaatattcaacttttttttgaaataacaaaacagacacatttcaagtacattaaaaaataaaggttttgTTTCATTGTGACCCTCTCTTCCTTTATCATAGTCATATAGAAAGtgatatatttatactgtacatagtaTCCTATTTTACCACATAgacaaaatacatatatatgcatacagTTATGTATAAAAGTCATAGAGTTAGAAATCTTATTTTTTCTTCCGATCCTGGGTGCACCGCGGACAAAACCTAGGGAATgaaaaaattttcattttaatgtatactttaaatgttaaatctgtGATGTATTTAAATCCTTCTTGGCACTTCATCAGATGTTTGACATACCATTTTCCTTTGGGCTTTGTTGTGAGATCCACACATGCAAAGTGAAACCATTCGATTggacactgttaaaaaaaagtattaaaaaaggTTGAGTAAACTGTGTTTGACAAATAAATACTGATTGTAGCCTACTGCTAACTAAGTAATAAAACACCTGGGGCGTTCCAacataggaaattaatcaaagatgtggtggtgtgatgtggcccaatgcAAAGCAGTGTTACTCTTACCACCTaaaagttggttattttcctataacaacatgtcccaaCATTTTCCTATTagactacagcaatttgccaatgattacaatttttaatttattaatgaacaacacatcatgcatttcatccatttatagttacgtttaatgttgtggaatgtttgtGAGACATGTTAGCTGCTGTTCTCACCCTCATCAGAGTCTCTTTTTGAAGTTAAAAAATGCATCTTATAAAGTTACTGTGAAACCGCACAttgtaaactcctccgtcctgaaggtTTTCCAATGTCAGAaaacttccataaatgttgaataaacgtctccttacagaaaacttcgccATATCAACAAGTATACATTTTTCggtgttaaataacagcatatttttattcgtttattattagctttagattatgtagattgtctatgaatgagttgttactggagaaacaataacgtacaagaaagagtgcattaaaaCTGTATAAACCTATCGTTTGAATTACAGCGGATttgagatgctgttatagaaagtcaATCaacttctgtccaatcagaatcacAAATTCAACAGTGGTATAAATAGCATTTGTGTTCATGGTAATGTTATCCTGAATCTgtgaaaaatattacttttaccTTGAAAGCTAGGGGCTGTGTCTTATACAGACATGCAGATCTAAGTCTTAAATGAAAAGTAGCAGGTTTCTAAacttctttaaaataatttaaaaaaacaggagaacaataaaaaataaatgaatgttaaataatactaataaatgaGGCGTACATCAGGGTTGTCACATCCAATCATTTCTCCATATGACACCTGATGGCACAAACAGTATGTGGGCTCATTGGGGTCCACTGGCATGTCCAGGACATCTGATGGGTGCACCGGCAGCAGGGACTCCTGGAAATCAGGACTAGAAAAATACAGAATGGAAAAAAGGGAACCGTAAGACTCTGTAActatactgtaattatactgGTGAACTAACAAAAGGCTTATTAATGCTGACAGAAaaacaatgaatgaataaattcttaaacctg

Function

GO:

id name namespace
GO:0005814 centriole cellular_component
GO:0000922 spindle pole cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214029 lncRNA upstream 6551 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 23778 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA upstream 69265 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 105700 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 457669 12850960 ~ 12851179 (+) True G180534
TU214035 lncRNA downstream 88440 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 134498 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 316248 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 784213 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 832426 14145873 ~ 14293381 (+) True G181157
XM_034308887.1 mRNA upstream 28336 13277958 ~ 13280512 (+) True LOC117598427
XM_026930329.2 mRNA upstream 69211 13236998 ~ 13239637 (+) True aqp12
XM_034308898.1 mRNA upstream 197142 13096712 ~ 13111706 (+) True ankmy1
XM_026930729.2 mRNA upstream 213885 13088274 ~ 13094963 (+) False hsh2d
XM_034308546.1 mRNA upstream 214458 13088273 ~ 13094390 (+) False hsh2d
XM_034308819.1 mRNA downstream 6496 13319943 ~ 13368258 (+) True impact
XM_026923575.2 mRNA downstream 66349 13379796 ~ 13397775 (+) True LOC113532271
XM_026942260.1 mRNA downstream 113223 13426670 ~ 13430143 (+) True rpl36
XM_026927604.2 mRNA downstream 136012 13449459 ~ 13461109 (+) True ftsj3
XM_034308542.1 mRNA downstream 148833 13462280 ~ 13468477 (+) True lim2.2
TU214031 other upstream 3132 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 33292 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 35231 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 39119 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 41071 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 182143 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 851579 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1248243 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1276472 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1309096 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile