RNA id: XM_026928296.2


Basic Information

Item Value
RNA id XM_026928296.2
length 2024
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC113535100
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19490432 ~ 19495901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgacagagagagagagagagagagagagagagagagagagaggacgtTTCATAGTGACAGGGTTGTACGAGGTGAAATGGGTTCTTTTGTTAAGTTGCGtaacttttcctctttttaattAGTGACGTTGGAGCAAACAGGCTTTCAGTGATGGATGATGCAGTGTTAAATCTGTCACAGCGCCTCTAACCCGCTGTAGTCTTGACCTCAGTGCACTAACCGCTGCGCCCAGTCTCACTGGAGGACCATGACAACGGCGTCGGTAACGCTAACGGTAACCGCACAGCAAATCAGAGACCGGCTGCTTCAGGCGACTGACGCTCACAGCAACATCAGCAATATGGTGGCTGTATTGGATGTGATATCCATCCTAGAGAAGTACCCCATCACAAAGGAAGCGCTTGAGGAAACCCGGCTTGGGAAGTTGATAAATGACTTGAGGAAGAAGACCAGAGATGAGGATCTGGCAAAGCGTGCAAAGAAGCTCCTGCGCAACTGGCAGAGGCTGATTGACCCACAACAACCTGAAGTACTGCCAAAGGAACTTTCAAGCACTTTAAGCTCTGTTGTTGGACCCAATCGGTCTCAGTCATTGCCTGTTTCTAGATCTCCTCAGACTGCAACAGATAATGACAAGAAGCCTGTTTTACACAGTGTTCACTCTTCAAGCACTGAAAAGTTCTACcctataaaacacacaggtaAGCAAAAAGTGGAAAAGAACTTACCAACGTTAAAGGGCACAAAAAGATCTGCACTGTCAACAGCCAGTGGAAGTACTGGTGGTCCAGAGGATCTTCAAATACACACCAACGCCATCAAACCTCACTTTAGTTCTCCTGAACTCAACAAAGAACCCACTGCTTCTACAATCTTCAGAAAATCAGTATTACAACAGCAGGGACAAAGGGACATAACTGCTGTTGAGAAAGTGAAGCACAAATCTCAGAGTCACTACACCAACCCGAGTCCTAGATCAGTAAAGCAGTTAGTACCAAGCAAGCAGCCAACATCATTTTCTGCAGCTGACTCTGAACCTCTTTCTGCACTGCCATTACACTCTTCCATCCAAGGTATGCACACTGAGAGTCACCAGTCAAAAGACCTGCCACACACGGAGAACGAATCACTCCTAAACAGCGAGAGGATGCTTGAACAAATGAATAACCTACAAAACAAGTCTAAAGGCTTAGCACGGCTTCAGCCAGGTTTACTCAGCGAGGTTACCAATATGGAAACAGAAAAAGACATCAAACCCTCAGATGGCAAGAGGCGGAAGCCTCAGTCAAGAGACTATACCATCAACCTGGAAGGACGGTCATCTGATGACACGTGTAAACCTGCTCGAGTAAAAAATCGTAAATTAACCTTTGATCCCCTCACACAACAAATTAGACCTTCAGCAGTGAATCAGAGTGAGGAGCAACACACTCCAGTGGTGGATGTTAATGAGCCAGCGAACCAGAAGCAAAGCCCTTCTGCATCTTCACCCAGCGCTTTGCACAAGATGAACTGGAAAGATATGTCGCAAAATGAAATTGTCAAATATTACCTGAACCTCCAAAACAATTTGTTAAAAACAACCGGAAGTCAAGTCCCAGGGGCGCACTTTTTTATGACTGAGTACTTGAAATGTGAGGAAGACAGTATGAGGGAGGCCAGCAAAACCTATGTCCAGGTGCCCAATGTTTCAGAGACTAATTTGCCAGGGATAGACCGAGACATCACAACAGAGGACgtccacaaaataaataataagcacTGGCCTGGGGTTAACGGCTGTTACGACAGCGAAGGCCAATGGTACGGCTGGACCGAATGCATATCTTTAGACACATACGGCGACGGAAGTAAACTGAATATTCTGCCATATGTTTGCATTGACTAAAAAcagttgtataaataaaattgtgtctCTGGATTCCGCATGGTATTTATGCGTGTTCCagatatgtgtttgtgtaataactgctttataatattttgtatctatttataactttttgttctgtttgttttggatg

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K15169 MED26; mediator of RNA polymerase II transcription subunit 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218362 lncRNA upstream 2654 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA upstream 2654 19486372 ~ 19487778 (+) True smim7
TU218369 lncRNA upstream 27589 19461824 ~ 19462843 (+) True G184503
TU218370 lncRNA upstream 28742 19459818 ~ 19461690 (+) True G184504
TU218173 lncRNA upstream 408947 19081252 ~ 19081485 (+) True G184340
TU218480 lncRNA downstream 30976 19526877 ~ 19545502 (+) False LOC113546543
TU218491 lncRNA downstream 52762 19548663 ~ 19602639 (+) True G184614
TU218492 lncRNA downstream 52762 19548663 ~ 19550326 (+) False G184614
TU218481 lncRNA downstream 58076 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218499 lncRNA downstream 165191 19661092 ~ 19664491 (+) True G184617
XM_026923920.2 mRNA upstream 2648 19486328 ~ 19487784 (+) False smim7
XM_026930849.2 mRNA upstream 32258 19442164 ~ 19458174 (+) True crtc1b
XM_034308396.1 mRNA upstream 32258 19442164 ~ 19458174 (+) False crtc1b
XM_026930857.2 mRNA upstream 32258 19442165 ~ 19458174 (+) False crtc1b
XM_026919525.2 mRNA upstream 51251 19429911 ~ 19439181 (+) True klhl26
XM_026929979.2 mRNA downstream 2462 19498363 ~ 19505101 (+) True slc35e1
XM_034308463.1 mRNA downstream 13132 19509033 ~ 19524997 (+) True si:ch73-40i7.2
XM_034308528.1 mRNA downstream 31145 19527046 ~ 19531687 (+) True LOC117595669
XM_034308909.1 mRNA downstream 47568 19543469 ~ 19548212 (+) True LOC113546543
XM_034308397.1 mRNA downstream 54745 19550646 ~ 19554969 (+) True si:ch73-40i7.5
TU218227 other upstream 221210 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1693813 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1708619 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1738930 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 36180 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 54481 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 199343 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 332085 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 369897 19865798 ~ 19871463 (+) True ccl44

Expression Profile