RNA id: XM_034308977.1


Basic Information

Item Value
RNA id XM_034308977.1
length 6839
RNA type mRNA
GC content 0.46
exon number 6
gene id nlgn1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17878240 ~ 18133981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttcttggctggATTTGCTTCCTTcggattcctttttttttcttctttctcttttttgtcaAGAAGAAATGCTCTGAAAACTGGAAAAGGCGAAGAGGAAAACTGTCTGAGGATATAGACCTGGGGCCTCAGCGGGCTTGATTTATCTGTCCACAACCAGTCGTGAATGGCTAGCATGGACAGCGGCTGCGTGGATAGGACGTGACCTGACGAATAGTGTGTGGCGAAGATGTTGTCTTGCCATGCATAGCACTCGATGAGGGAACCCTTGCCATGCAAAGAACCACTGGACGTTTCGAGAGTCCTACGTTTCGCAGGTGTGACCTCTTGGCTTTGAGCGTGCCCAATCAAAGGATATAGCGGATATAAAACCAGCGTCGGAGCTTGTATCACTGTGGGGAGGGGAGGGGAATTAGCGAACTATGCTCGGCCAGCTCGGTCGGCCCTGGAGTGCCATGCAGTCACGGCTGGATATGTGTGCCGGCTTGGAGCTGCCCTCCCTGCTGTGGGTGCTGGCCTTGGCGCTCCAGACTTGGGTGGGTGCTGCGGAGAAGCTGGACGAGTTGGACCCTGTGGTGACCACGGCATACGGCAAGCTGAGGGGCTTCAAGAAAGAACTCAACAACGAGATTCTGGGGCCTGTGATCCAGTTCCTGGGTGTGCCCTACGCGGCACCTCCTACAGGGGAGAGGCGATTTCAGCCCCCCGAGCCACCCATGCCCTGGCAAGACATCCGCAACGCCACACACTTTGGCCCTGTGTGCCCACAGAGTGTTGTGGAAGGCAGGCTGCCTGATGTCATGTTGCCTGTATGGTTCACCAACGGCCTGGAGGTGGTTTCAACCTACGTGCAGGAGCAGAGCGAAGACTGCCTTTTCCTAAACATTTACGTGCCCACAGaggatgATATCCGAGAGAGTGGAAGTCCCAAGCCGGTGATGGTTTTCATCCATGGCGGATCTTATATGGAAGGCACAGGAAATATGTTTGATGGCAGCATCTTGGCCAGTTATGGCAATGTCATTGTCATAACCCTGAACTACCGGCTTGGTGTGCTAGGTTTTTTAAGCACAGGAGACCAGGCGGCCAAAGGCAACTATGGGCTCTTAGATCAAATCCAAGCCCTGCGCTGGACTAGTGAAAACATTGCCTTCTTTGGTGGCGACCCGCTACGCATTACAGTTTTTGGATCTGGGGCCGGAGCATCTTGTGTGAACCTCCTCACGCTGTCCCATTATTCTGAAGGCTTGTTCCAGAGAGCCATAGCTCAGAGCGGCACGGCCCTGTCCAGCTGGGCAGTGAGTTTCCAACCAGCTAAATATGCACGCATGCTGGCCAGAAAGGTGGGATGTGACTATCACGACACAATGGAACTGGTGGAGTGCCTGCAGAAGAAGGACTACAAGGAGCTGGTGGAGCAGGACATCCAGCCAGCACGCTACCACATTGCCTTCGGCCCAGTCATCGATGGCGACGTGATCCCGGACGACCCCCAGATTCTCATGGAGCAGGGCGAGTTCCTCAACTACGACATTATGCTGGGTGTGAACCAGGGTGAGGGTCTCAAGTTTGTCGAGCTGGTGGTGGATGGAGACAGCGGTGTGCAGGCCAATGACTTTGACTATGCGGTGTCCAGCTTCGTGGACGACCTGTACGGCTACCCCGAGGGCAAAGACGTGCTGCGCGAGACCATCAAGTTCATGTACACGGACTGGGCTGACCGGCACAATCCAGAGACCCGTAGGAAAACGCTGCTGGCGCTCTTCACTGACCACCAGTGGGTAGCGCCTGCTGTGGCCACAGCTGACCTGCACTCCAGCTTCGGCTCGCCCACTTACTTTTACGCTTTCTACCACCACTGCCAGACAGAGCAGGTGCCCGCGTGGGCGGATGCAGCTCACGGAGATGAGATCCCTTATGTCTTCGGCCTGCCTATGATCGGCCCTACCGAGCTCTTTCCCTGCAACTTCTCCAAGAATGATGTGATGCTCAGTGCTGTGGTCATGACCTACTGGACCAACTTTGCTAAGACTGGTGACCCCAACCAACCAGTGCCGCAGGACaccaagttcatccacaccaagCCCAACCGCTTTGAGGAGGTGGCGTGGACAAGGTACAATCAGAAGGAGCAGCTGTATCTGCACATTGGCTTGAAACCACGCGTCAAGGAGCACTACCGTGCCAACAAGGTCAACCTCTGGCTCGAGCTTGTCCCGCACTTACACACCCTCAATGAGGTCACGCAGGTTGTCTCAtccaccagcaccaccaccaaGGTGCCTGCGCCAGACGAGACACCACAGACTCCCAAGAAGATGCCAGCCAACACCAAGAGGCCCTTCCCCACACCTTTCCCCACTGAGACACAGGATGCAAACCAAAATCAGAACCACAACCAACCATTCCTGGTGGAGCAGCGTGACTACTCCACCGAGCTGAGTGTCACGATTGCCGTTGgagcttctcttctctttctcaacATCCTGGCCTTTGCTGCACTCTACTACAAGAAGGACAAGCGGCGGCACGATGGGCATCGGCGTGGAAGCCCTCAGCGCGCCAATGCCACCAGTCAACTGGCACCCGTACCCGACGAGGAGCTCATGTCGCTGCAGATGAAGCGTGGTGAGCTGGAGCGTGAATGCCCTCTTGTCTTGAGGAGCGGCTGTCCACCTGACTACACCTTAGCCATGCGTCGCTCACCTGATGACGTACCACTCATGTCCGCTAACACCATCACCGTCTTGCCCAGCACCATGCCCAGTGCCCTCGGACCGTTGCATCCGTTCAACAGCTACGCAGGAGTGCAGCACAACAACACACTGCCCCACCCACATCCCCATTCGCATTCCACAACCAGAGTATAgccacacacgtgcacacataTATTCAAAGGATTTTGGTTTTGGTGAAGCATATCTGTGCTACCACCATTTTGCAGAACATGGAATACAGTGGGGTTTCTTTTATCTCCTTTCGGAGGAAAACTAACGTTTTATATTAGAAATGTGAAATGAGAAGAAAATTGCAAAACAATTTcagatttaatgaaaaacaacaaacagagatggatgatttttttaaaatcctggtATCATAGACAAAGCCAGGCCTATTTCCTGACATAGAAGTATCACTACAAGTTGGCTTGAAAGATTGGCTTGATTCAGTTACTGAGTTACAGAGGCTGTGGCAGAGAGGGCGCGTGGGAGGCCCTGtgtaaatgaagaaaatatattgttttcCAGAGGCACTCGATTGTTGAGTACTCTCTCTGGAGCGGACAGGAGATGCTGCTTACTAATTTAGGCATGTGTTCTCCTATAGATGGAGGTATTGTAAGATACGGAACAAAACATTACTGGAAAAAGAGGCGTGGACAAGAACTTCTCAAGAATATGCACAATGTCTTGGAATCTTTTTTGTCAATTTATTTTTGGGAACAATTTTATTGTATAGAATCTATTTACATATCTAGATATGTACGCAAAGCTGTTTAAGCTCTGACTCTGGGGCATCAGTACTGGAGAATCTGCCAGCAGCTCATATACTGGGGTGGGAACGTCACTGGTTTTCTGGCAGATATAGCTTCATCACACAAGTGCTGTCTGTATGGAGAACTGAAGGACAAAAAAGGGAAGCTGGATATTTTTTAGCACGAAGCGCATGACAATTTATCTGCTTGGTGGCTGTTCTGCTGATTaagtctttattaaaaaaaaatattccccATTGGATCCGTTTGAGGAAATACTGCTCCGATTGGCTCACAATTCTACCAAAATCGGAATACGCTGGCACGGACAAAGGCAACGGTTCCCGAAAGGATGTGGCTGAAACTGAAAGTGGGGGCAGGGATATGCTACATAGAGTGCATTCACAAATAGCTTGAGTGAACGTGGTTATAAGGACTAGTTTTGTACAATGTGTCTTGGTAAAACTTTTTAATAGTGGTGAGTCACTTGCTGTTTGAGATCCCATTTGTGGGATAATCatgattgtttctttttttctttaatttgctTGTTTGGGCTTGctgtattacattatttttatttatttttattgtaccAATTTTACCTTAGAAAATAACCCTCATCATTTAGTTTATTTCTTAGCCATACTTATCAGGAAGTCCCCTGCATAACAGAAGCCCCAAGAAATGAAGTTGCTGGGAACCATTCTGCATAACTTTAGTTCTCTGGAATGTGATTGGTTGCATTGATTTTCTTTTGCGCGTGCCCCTTTATTGAGTCCCCCGCTGTAGCCCTACTTAAAAATGAACACTGATGCAGGGAGGCTCTGCTGACAGTGTAGATTTGAAGGCCCTCTCATCTTCTTTTGCCCACATCTGATCACAGCAGGTGCCGAGGTGGTGgtgtgaaaaattaaataaataataaataaataggaaaaaaaaaagttcacctGAGCTGTACTAGTAGCGGATCAGTTTCCACAGTATATCACTCTGTCACTAGAAACGCCTTTAAAATCATTTCCCATGCTGATTAGCATGTCTGTCACTTTCACTTTGGCCCTCCTTCAGTCATTTTGCTGTCATTCTTAGGTAggcattagattttttttctttttttttttttttgaacacaaGACTAACTGTTCTTCCATTACTGCAATTCTGCGTTCTGTCTACACAGGCAATTAGTATTCAGTTTGCCCATATTCTGCTTCTCCACTTAAACATGTTATAGCACTGTGGCGAAGTAACCTGTCAAACGCAGATAAAAGTTGGCTTTGCATGAGTCTCTTTTGTCTCTCCAAAATTCCTCCATGCATCTGTATGAGTAGAAAAGGCTACTGCAGGAATGCTTTTCTGACATCGTTCTTAATCTTCTTGATTACTAATAGTGGGCGGTATGTCAGCCGATCCCATAAATCAGTTGAAGTTCTTATTAAAGTGTAGATTTTCAACACTTTTACATAACAACACAATATAttaccctacattcacactggCAAGTGACAAAGCAACAAGTGACAGCTCGTTTTCTATATACGTGCGTGACATGGAGTCGCAATTTCTGCAAGTGACATTTGCATTGAGATTTTCTGAACTCTATGCAAATTATGTATGATGTGGTAAAGCGACTTATCCAAACTTATCAACTCAGATGATTTCCtggaccaatcctatggcacATGTGgtctgacatttcttcagttccctactcacaactttagttcctaccagCAATTAGTTCCCTTTTACTGTTTGacatgcaaaaatggaagaaaatcttACAACCATGGGTTCATGTTGTGATGATGTGTATACAGatttgatggaaaaaaaaaagcttgggaGGAAGTAGCAAATATCATACAGTTATCGTACAAAGCTAGGATGACGGCTGTCATTGGCCAGTCAGTGATCAGATTCTTGATGAGATGTTACAGAGACAAAAATACTGTCAGGTGTTTTCGTACTGATGCGAAAAGCTAATAACTGTGCAGTCCTGCGCTATGGCTGCACTGAAGGCTACTGCCGGTAAGATTGTTAGTTTAAATAATcacttttaatgattttaaaaattttactaGGACATACTAATGTCTACAAAATAGCAGGTAAACGTCATATTATAAGCAGTGTGGTTAGCatagaaataaataaggaaaatgcACAGCATTGGACCTGCCTGCTGTGTTTTGATTGGCTCGTGTGCCTATTGCAaacaaaatcttaaaaataaaagctgctgtttatttttataaccgATATAAATGAAGCAGTGTTCATTCAGTGTTGGAGTGGTTTCCCAAATggcaaatttaaatttaatttggtTTGTCTTTGCATATTCAACATGAAATGGGTTCAGTTTGGTTTCATAACTTGTTTAACAGGAAACCAAAGAATACCGAAAACATTGGTTAAGAACTTGAACCATCAAATTATATCATGAAAAATATTGATAACTGTTTTATACTAGACCATGATTTTAAAGGCAACACTTTCACAGTTGCCCTTAACGTATTTGAAATCTGAGAGCCCAATGAGTAATACAGTGCCATCAAGGAGTGATTAATTAAAGCGCTTGTGAGTTCAGAGAGATATGGGTTATTCAGAAAAGTCACAATGACACACAGGCACACTGCCagtgaggagagaaagagaggataAGACAGAGgacttcaaaaaaataaaaggagaaaattatGCAGTTGTCCCAGGGCCCAGGTGACCTGTGACACGGCGGAGGTCCCAAACAAGATGTTCCCTTCTAGAACACGGCCTCCACTGGGCTGCTGCGTTCCTGTCCACTCTGTTCCTACTGAGCAGCACAGTAAATACAGTGCAGGAGAAGCTGGAGCATTAACTAAAGCCCACCACACAGCCTCGCTCACTCAATCAATACAGGTATGTATATGCAAAGCAGCCCTGCCCCAAGTTCCCTTCCAAACGAGACTCCTTTTGAGCAGCGTTCAAATTTAATGAGCCGTTCATACGAGGGCTCCTTTGAGGATTTGTCCCATATATTTGCATGTAGGACCAAGGTGAGAGCTGGGAAACATCAGTTACCGAGGCGAGCTGCAGGGCTCGATATCACACACCATCGACAAGATGAGCCTCACGACTGAATGTATTACAACATCGAGTGCCATttacaatttgtttgtttttttttctttttctttttttccttttgttcaaTCTAAGCTTCAAAGGGACGATCAGAATGCCTGTTCATGGGAACCATATCAGAGGGCAGTTGTAATGTAGATTATTTGTCATTATGTCTTTATTTCTGGTTAAATAGGACTTACTCTTCTGGAGCacaataaatgattttattaagcTGAATTTA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217351 lncRNA upstream 17706 17916003 ~ 17916210 (+) True G183585
TU217344 lncRNA upstream 30932 17902785 ~ 17902984 (+) True G183578
TU217332 lncRNA upstream 45563 17888127 ~ 17888353 (+) True G183566
TU217213 lncRNA upstream 208656 17724763 ~ 17725260 (+) True G183478
TU216673 lncRNA upstream 353802 17577740 ~ 17580114 (+) True G183058
TU217463 lncRNA downstream 32641 18166622 ~ 18237120 (+) False LOC113526284
TU217556 lncRNA downstream 295525 18429506 ~ 18437961 (+) True G183787
TU217575 lncRNA downstream 434644 18568625 ~ 18569959 (+) True G183805
TU217567 lncRNA downstream 442751 18576732 ~ 18588716 (+) True G183798
TU217566 lncRNA downstream 459717 18593698 ~ 18597240 (+) True G183797
XM_034308929.1 mRNA upstream 152102 17754176 ~ 17781814 (+) True ect2
XM_034308930.1 mRNA upstream 152102 17754176 ~ 17781814 (+) False ect2
XM_026927825.2 mRNA upstream 152102 17754178 ~ 17781814 (+) False ect2
XM_026927834.2 mRNA upstream 152102 17754178 ~ 17781814 (+) False ect2
XM_026924637.2 mRNA upstream 182414 17685173 ~ 17751502 (+) False mcf2l2
XM_034308548.1 mRNA downstream 56635 18190616 ~ 18409057 (+) True LOC113526284
XM_026914759.2 mRNA downstream 293101 18427082 ~ 18551154 (+) True si:ch211-51h4.2
XM_034308949.1 mRNA downstream 326821 18460802 ~ 18551154 (+) False si:ch211-51h4.2
XM_034308905.1 mRNA downstream 532595 18666576 ~ 18671367 (+) True LOC117598435
XM_026926001.2 mRNA downstream 585243 18719224 ~ 18741759 (+) False si:ch211-247n2.1
TU217312 other upstream 137297 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 152103 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 182414 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 184625 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 297521 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 1120976 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 1398100 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 1416401 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 1561263 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 1694005 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile