RNA id: XM_026928468.2


Basic Information

Item Value
RNA id XM_026928468.2
length 4897
RNA type mRNA
GC content 0.40
exon number 5
gene id mpv17l2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19300621 ~ 19309461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGACTAGCGTTTCCTGTCTGCGAAATGAACCATTCATTAACAAATGTCAAGACATGCTGCTGACAGCGTgtgttagttttgttttgtgtttgaagTTATTTGGACGGGAGAATTTGGTGTTGttgtagtaatattttattgtaaatgatCTTACACTCCTCGGACACAGCAGGCTAGCTAGTCATGATCCCTCAGAGTAAGAGCCTGCTCGTGCGGATAGCTTTCTACTGGAAGCCGCTTTTCTCGGGGAAGTACCTGATAGTGACGAACATAGTGAGTAGTGGAGGCATGCTTGCTCTTGGGGACTGCATTCAGCAgagcagagagaagagacaCAGTCCGGCTAAGACCCGGGACTGGCAGCGCACAGGGCGCATGTTTGCAGTTGGATGTACCATGGGACCGTTTATGCACTACTGGTACCAGTGGTTGGACAGGGTTTATTCGGGAAAAATGGTAAAGGCAGTTGCCAAGAAAGTCTTGATAGACCAGCTTGTTGCCTCACCACTTTTTGGAGCATGGTACTTCGTAGGTATGGGCCTGATGGAGGGTCACGGCTGGCTCAAAGGCTGCACTGAGTTTAAAGAGAAATTCTGGGAGTTCTATAAGGCGGACTGGTGTGTCTGGCCGACTGCACAGATGATCAACTTCTACTTCTTGCCAGCTAAATTTCGGGTGTTGTATGTAAATACAATTACACTGGGATGGGACACCTACCTCTCATATCTCAAGCACAGGGAAAGCCAACAAATGGATGAATTGGGACCAGAGGACTCATCAATGTCTCCTCCCTCAGCTAAACCACTGGATGATAAACTATAGTCCCACACtaatttcagtttaaatttGAGATTTTAGATATTATTACATGATTCTTTTACTACTTAGACCTATAACTGACTTAATCAATTACTCAAATCAGTCATTCGAATCAGTGTGTCAGCTAAATGAGTTCATACACCTGTACTGAACCTTATCAGGAGTTCTCAGAACATGTCTAGACATGTTCTCACTGGTGAAGGGAATTCTGTTTTCAGTGTCATTTGGCGCAGCTCACCAATAATATAAACTCACGGGCCACTTaattaggaacaccatactacTAGTGGGTAGTAACCCCCTTTGCTCTCAGGCCTCAGTTCTTCATTGCaaggattccacaagatgttagaaacattcctttgagattctggtccatgtgaAATGATTGCATCATATAActggcagatttttcaggtgcactttcatgctgtgagtctcctgttctaccacatcccaaaggtgttctattggattcaaaTCTGCTGACTGGGGAAGCCATTGAAGTATAACACTGAAGTACAGTAATCTCAcggtcatgttcatgaaactagtttgagatgactttgtTACATGgcgcattatcatgctggaagcagCCATTATAAGATAAGTAAATTGTAGCCATAGAAGGATGCACAAGGTCAGCAACAGTACTcgggctgtggcattcaaatgatTGTTATTAAGGGGCCCAATGTGTTTCACCAGCAGCCTAAACTGTTAATAGAAGGCAGGTTGCTtacatggattcatgctgttgacaccaaattctgaccctaccatctgcatgtGGCAGCAGAAATTAAGATTCCTCAGACCAAGTGAAGCTGTTCCATTTTTCAACTGTAGCAGAACCTGAtgaggtcttctgctgctgtagcccatctgcatCAAGGTTCAACAttatgtgcattctgagatgcttttcttttcatcacagttgtaaagagtgattatttgagctaCTGTAGCCTTACTGCCAACTTGAACTTGTCTTAGACCTCTCTCAGGAGTTTCTGCCCTGAAAACTGCCATTCCttagttttttttgtaccattctgtggaatttctagagactgttctgtgtgacaaccatgccacagtcgaAGTgcctgaaatcacatttttcccctgttctgatgtttgatgtcaactgaaactcttgacctgtgtgtgcatggttttatgcattccacttctgccacatgattggctgattggataactgcgtGAATGAGCAGGAGTACAAGTGCTCCTAATTAAGTGGCCGGCAAGTACATTAGACTGCATGCTGGACATCTTCAAAAAGTAGCAGTGCAGTGGATTTTTCCTCTTATGCtgcctcatacacacagctgagagtcaAACACACGTCTCACCATTCACGCTAACTCACAGCACAGACGTTTTCATTGAAGTTTTTGATGAGGTCACACTGCAAGAGTAGCAGCATTGCCTACatctacaaaaatataaaatgaaaggtCATGAGGTTAAATAGAAACTGTTCATAATGAAGACTGTACATCACTAATGCTCACAGTGTAAAAGTTCAACTGAAAAGATGCCTCCATCTAAAAGAAGTCTGAATCATGTCATTTGTTCTCTGCTGCTGAGAGTGTAGAATGATTACAGTATAAATCAAGTAGCACCAGCACAGCAGTTAAGGTTCTGTGCTAATGACCAGCAGGTTGTGATTTTAAACACCAAGAGAGCCAGTTTCAGCCTCCAGGAGGTACCTTCAATCTCATCAAGAATAAttgaacagatttatttcaccatgaaggaaaaaaagattttggctAAATGCCAGTTTTGCCTGTTTAATTGGCAAAGATTTAGATcaataaaacaagcaaacatttttttatctgAAGAAAAGACCTTGTGTAGTAGtgtgaaatgaagaaaagatAAAATGGTGTTTGATATTGATTAAGACTTTGGGGTTTTGGGGATAAGACTTAGATTTCAGTGCTTGTTCTAGTTTTCTAGCTGGTAATGGTGGACTGCGTTTAAAAGGCGTGTCTTCAGGTCTAGCTTTGAAGACATGCCTTTTAAACGCCATTgctttaaaatagattttaactTGTTTTATTATGCCAAAGTAAATAAGCAGTACAGTGTTCCAGGCCCAGTGTGGGGCTGTGGATTATTATATGTCTAAATTGTAACTTCTGAAATCAAACTTGATGCCTGCAGCTGAAGTGTAGTTCTGTTACAGTGTGCAGTTCTAAGGAATTTTGCTCAACTACCTGTAACACTCCACCCCTGTCTTATTTCAGTGATTTGTGCAGATATTTGCTACTCTGCATTTCTGATaattatacttttattacaAATGATAAAAACAGTTGCATGAATTGTTAGTGTTAAATACTATTTTTGAAGATTTGTGTGGAAatgatttttgtttgctttgatttGACTCCTTTGCCTTAATTTCTTCCAGGCCGACTGTTTTACAAGCAACTCTGCTACTGTTGCAGTTTTTATGAGaggatatacactcactgtccactgtATTAAGAACACATGTACAACTCCacttcatgcaattatccaatcagccaatcatgtggcagcagcacaaggcAGAAGATCCTGCAGctacaggtcaggagcttcagttaatgttcacatcatacgtcagaatggggaaaaaatgtgcagGGTTTGGCGAGTTGTGcagtctgagatgcttttctgctcaccacggttggaaagagtggttgtttgagttactgtagcctttttgTCAGCTTGAGCCTGCTGAATCTGGCCATCCTCCTCAGATGTCTCTCATTAATAGGGTGATTCCGCTCACAGAACTGCCCCTCACTGGatcaccattctgagtaaacgctagagactgttgtgtgtgaaaatcccaggagatcagcagttatagaaatactcaaaccagcctgtctggtaccaacaatcatgccatagtcaaaatcactgagatcacatttttcccccattctgacgGTTGATTTCAACATTACcagaagctgctggcccgtatctacatgattttatgcattgtactgctgccacatgattggctgattagataattgcgtgaatgagtagatgtacaggtgttcctaataaattggatGGTGTTTGTAAATGCATCATGCATTGATCATTGAAAACCTCTTTACACTCTTCTCTTGATCACATATGTTGGGAACATATGTGTTGctatgctattattattatcattattataagtATCTTGTGTTCCCCTCCTGTGATGGGTGGCTGGCTGCTGATCCTGCTGTTTATTATAACTGTTACAGCTCTATACTGTAAACATGCTATGTATGTACAATATATAGAAGTGACAGATATCTGTCCTGTACTTTTATGTGCAATGTTATCCAAATAGTAATTACCCTTACACTGGTTCTGCTCTGGTGTGTTCATCTGTGTTTATTGTGGTTTACAGTaataatttctcaaaaaaaaaaagaaaagaaaaacaaattcacATTATTTTCACTTACCACAAATGTGATCAGTTAACCAGtaaatgatttgtttgtgtaCTTAGTTTTTAGCACTGGAGCTAACAAGTTAATTCTGCTGACAGACAGTAGTTGCCAACATACCATCGATCAAACTGCCTAAGCTGAACAAATTCACATTGCTTATGTGGTTTCTGATACTGTATGAAACTTATCTATAAAAGTTGCCAAAGgcaagtgtgttattattgtgtaaataattagtaatttgtaattatttagacatttttagacATAATTTTGTGCCTTATTTGAGCTACATTAAGCTCGTAGCACCAGTGCAGAActgaagaagcaaacttcagacactgTACTGGCTGATCAACCATATTTGCAGTAggttaaaaatgtgtgaattccttttttctttttttttttcttttttttccttttttgggGTTGCTGTAAAAAATAgtctttatctatttttttttttatttcacagagGTTAAAGCTGAGCTTTACCAGAGATTTTACAGATCTGTgtcaatgtaaatgtatttgaaCAAATAAATCTCATAATGTAAATGTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13348 MPV17; protein Mpv17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218173 lncRNA upstream 219136 19081252 ~ 19081485 (+) True G184340
TU218141 lncRNA upstream 288009 19012407 ~ 19012612 (+) True G184309
TU217958 lncRNA upstream 405746 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 695699 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 703381 18593698 ~ 18597240 (+) True G183797
TU218370 lncRNA downstream 150357 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 152363 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 176911 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 176911 19486372 ~ 19487778 (+) True smim7
TU218480 lncRNA downstream 217416 19526877 ~ 19545502 (+) False LOC113546543
XM_034308908.1 mRNA upstream 3073 19289267 ~ 19297548 (+) True LOC113533188
XM_034308787.1 mRNA upstream 12978 19271952 ~ 19287643 (+) True vtg3
XM_026933503.2 mRNA upstream 30360 19254931 ~ 19270261 (+) True adgrl4
XM_034308724.1 mRNA upstream 330074 18912318 ~ 18970547 (+) False ttll7
XM_026910829.2 mRNA downstream 9826 19319287 ~ 19322971 (+) False LOC113524462
XM_026910899.2 mRNA downstream 9963 19319424 ~ 19322971 (+) False LOC113524462
XM_026910752.2 mRNA downstream 9968 19319429 ~ 19322971 (+) True LOC113524462
XM_026929145.2 mRNA downstream 15272 19324733 ~ 19403219 (+) False LOC113535669
XM_026929170.2 mRNA downstream 15272 19324733 ~ 19403219 (+) False LOC113535669
TU218227 other upstream 31399 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1504002 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1518808 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1549119 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 222620 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 240921 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 385783 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 518525 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 556337 19865798 ~ 19871463 (+) True ccl44

Expression Profile