RNA id: XM_026928883.2


Basic Information

Item Value
RNA id XM_026928883.2
length 10270
RNA type mRNA
GC content 0.39
exon number 5
gene id si:ch211-69b7.6
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21174029 ~ 21187064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGTGTGGTcactttttttggaaatgtattatgagttttttttcctggatgTAAAGATGTCATGAGAATGAATTTGCGGGTTTGGCAGCGTGTCCAAAACTGTGTGAGGTTAAACCTGTTTGTTGGCTGTTGAGGAGCCTGCTGCCTTAAAGATGCCTCTCATAAACAGCCAATGAATAGAGGAGGTAAACATAGTCGTACCGCTCTGTGTGTGGTGGCATATCAACATGGAAAGTTGACACATCCAGCTCTGAAACGAAGTTCAACGCAGGCTTAACACAAGGTCAGGCTTAGGCCTTACTTCTCTTGTAAAATTAtgACTAGTCATCGAAGGAGCCTGTCTGAGAGCTTTGTTCTTGAGGATAATGACAAACGATATGCGCATGTCTCTGGAATCAACCCTGAGGAACATCAAGAAGGAGATGAAACTGTTGGTGCCATGAAGAATGACGTCATTGACATACTGAAACTAATTGAACCATACAATGACAAGATTCAAGTGCTGTCAAAGCCAGGCCTGAGATCCAGTAAAAGCTTAGGAAATTTGGATAACAGAATCAAAGCTCCAGATGAGCTACGTAAGGATTCTTACAACAAGCTTTTCAATGCCAAAGTCAAGAGGTTTATTAAAGGAAACCGACAAGGAAAAAGTCAAGAAGACGTCAGCAACTCTCTAACTGGTCAGCTGAGACTGGGGAGGGCTAATGCCCCAGATACTGATTTGAAAGGCCCAAGACTAGAAGGGAAATTGGAAAAATCTAACCTTTCAAGTTTTATCAGACCTGATATTGATGTTAAAGGAGACTTCACAGGGCCAGAGTTTAGTTTGTCATCCCCCAAAATGGATGCAGGACATAGTCGTcatgacatttacattaaagGACTAACAAACGACCTCAAAACTGGTCATCCAATTCCAAATGTGGACTTACCGTCAGGCAATGTGAACACGTCCAGGTTTAAAATGCCTGATTTTGGACTGTCAGCACATAAAATAAGGTCACCTGACATTGAAATCTCACATCCTAAGATTAAGGGAGAACTCAATTCTCCAGAAATCACAACCCCAGATCTCAATGCACACACTCTCGATAGAATCAAAGTGCCAAATTTACAGAAGCAACATTTCAACTTCGAAGTTCCAGATGGTGATATTGATACATCTGGACTCAGCAGTGGCATTAAAGCTCCTGACCTTAATATTGACACTCCCTCCGGAAAACTAAAAATGCCAAAATTTGGATTATCAGGTCATTTGCCAAAAGGAGGGGTTGATGAACAAGACATTAAGTTGACTCTCCCAAAAGCTGATTTGAAGGAACCAAAACTGAATGTGAACTCCTCTGATATTGACATCGATAATCCTACaggaaaattcaaaatgccCAAATTGAAAACACCAAAATTTAACCTTCCAAGTTTTAAAGGACCTGACACTGATGTGACAGGAGACTTAGAAAGGCCTGATTTGAGTTGGTCCTCTCATAAATTTGATGCAGATGTTGATcttcctcacactgacactgatgGGCCCAAAGCAGATCTTAAAGATGTGACACTTCCAAATATGGACCTACCGTCTGGTAAATCAAAAATGCCCAAATTCAAGATGCCTGATTTTGGACCCTCGATATCTAATGTAAAGTCACCTGAGATGAATCTCTCTCTGCCTAAAATGAAAGGACAGATAAACTCACCAAATCTCACTGTCCCAGAGTTAGACGTTGGTGTCCCAACAGGTAAAATCAAAGGCCCAACAATTAAAGAACCAAAGGCTGATATTACAGCACCTGAATTCAACATCGATGCTCCTTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAACATTAAGGGAGACATACGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATTTGAAATCCCCTGATATTGCGATTGATAGTCCTACaggaaaattcaaaatgccCAAAGGGAAAACACCCAAATTTAGCCTTCCTGGTTTTAAAGGACCTGCCACTGATGTGACAGGAAACTTAGAAAGGCCTGATTTGAGTTGGTCCTCTCCTAATTTTGATGCAGATGTTGATGTTCCTGACATTGATATTGATGGACCCAAAGCAGACTTTAAAGGCATGACAAGTCCAAATATGGACCTACCATCTGGTAAATCAAAAATTCCCAAATTCAAGATGCCTGAATTTGGACACTCAATACCTAATGTAAAAGCACCTGAGATGGATCTCTCACTGCCTAAAATGAAAGGAGAAATAAATTCACCGAACCTCACTGTCCCAGAGTTAGATATTGATGTCCCAACAGGTAAAATCAAAGGGCCCACACTTAAAGCACCAAAGGCTGATATCAGGGCACCTAAATTCAACATCGATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAACATTAAGGGAGATGTAGGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATTTGAAATCCCCTGATATTGCGATTGATAGTCCTACaggaaaattcaaaatgccCAAAGGGAAAACACCCAAATTTAGCCTTCCTGGTTTTAAAGGACCTGACACTGATGTGACGGGAAACTTAGAAAGGCCTGATTTGAGTTGGTCCTCTCCTAATTTTGATGCAGATGTTGATGTTCCTGACATTGATATTGACGGACCCAAAGCAGACTTTAAAGGCATGACAAGTCCAAATATGGACCTACCATCTGGTAAATCAAAAATGCCCAAATTCAAGATGCCTGAATTTGGACACTCAATACCTAATGTAAAAGCACCTGAGATGGATCTCTCACTGCCTAAAATGAAAGGAGAAATAAATTCACCGAACCTCACTGTCCCAGAGTTAGATATTGATCTCCCAACCGGTAAAATCAAAGGGCCAACACTTAAAGCACCAAAGGCTGATATCAGGGCACCTAAATTCAACATCGATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAACATTAAGGGAGATATAAGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATTTGAAATCCCCTGATATTGACACTGATAGTCCTACaggaaaattcaaaatgccCAAAATGAAAACACCCAAATTTAGCATTCCTGGATTTCAAGGACCAGGCCTTAATGGCAAAGGAGACCTGAAAGGGCCAGATTTGAGCATGTCCTCTCCTAAATTTGATGCAGATATTCCTGGTCCTGACCTTGACATTGATGGACCCAAAGCTAATGTAAATGACATGACCCTTCCAAACATGCACCTACCATCAGGTAAAACAAAAATGCCTAAGTTTAAGGTGCCTGGTTTTGGACTCTCAGGATCTAAAGTCAAGGCACCTGAGATGAATCTCTCACTGCCTAAAATGAAAGGAGAGATAAATTCACCGAACCTCACTGTCCCAGAGTTAGATGTCAATGTCCCAACAGGTAAAATTAAAGGACCAACTCTTAAAGAACCGAAGGCTGATATCAGGGCACCTGAATTTAACATTGATGCTTCTTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAATATTAAGGGAGATATAAGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGTAAAAGGGCCAAAACTAGATATGAAATCCCCTGATATTGACATTGGTGGTCCTACAGGAAAAATCAAAATGCCTAAAATGAAAACACCGAAATTCAGCATTCCTGGATTTAAAGGACCTGACATTGATGCTAAAGGAGACTTGAAAGGGCCAGATTTGAGCTTGTCCTCTCCTAAATTTGATGCAGATGTTACTGGTCCTGACCTTGACATTAACGGACCCAAAGCTAATGTTAATGGTGTGACACTTCCAGACATGCATGTACCATCAGGTAAAACAAAAATGCCCAAATTTAGGTTTCCTGATTTTGGACTTTCAGGACCAAAAATAAAGGCACCTGAGATGGGTCTCTCACTTCCTAAAATGAAAGGAGAGATAAACTCACCAAACCTCACAGCCCCAGAGTTAGATGTCGATGTCCCAACAGGTAAAATCAAAGGACCAACTCTTAAAGAACCAAAGGTTGATATCAGGTCACCTGAGTTCAACATCAATGCTCCATCAGGAAACCTGAAAATGCCAAATCTTAAAGGACCCCAAATTAAGGGAGATATAGGTTCACCAGACATGAATTTGGCTTTCCCTGAAGGAGATGTGAAGGGGCCAAAACTAGATGTGAAATCCCCTGATATTGACATTGGTGGTCCTACAGGAAAAATCAAAATGCCTAAAATGAAAACACCGAAATTCAGCATTCCTGGTATTAAAAGACCTGACATTGATGTGAAAGGAGACTTGAAAGGGCCAGATTTGAGTGTGTCCTCTCCTAAATTTGATGCAGATATTCCTGTTCCTGACACTGACATTCATGGACCCAAAGCTAAGGTTGATGGCATGACACTTCCAAACATGCATTTACCATCaggtaaaacaaaaacacctaAGTTTAAGTTGCCTGGTTTTGGATTCTCTGGACCTAAAGTAAAGTCACCTGAGATGGATCTCTCACTGCCTAAAATGAAAGGACCAAACCTTACAGCCCCAGAGTTAGATGTTGATGTCCCAACAGGTAAAATTAAAGGACCAACACTTAATGAACCAAAGGTTGATATCAGGGCACCTGAATTTAACATTGATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCAAAGACCCCAAATTTAAAGGTCAAATGGGTTCACCAGACATGAATATGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATATGAAATCACCTGATATTGACATTGGTGGTCCTACaggaaaattcaaaatgccTAAAATGAAAACACCGAAATTCAGCATTCCTGGATTTAAAGGACATGACCTTGATGTCAAAGGAGACTTGAAAGGTCCGGACTTGAGCATGTCCTCTCCTAAATTTGATGCAGATATTACTGGTCCTGACCTTGACATTGATGGACCCAAAGCTAACGTAAATGGCATATCCCTTCCAAACGTGCAATTACCATCAGGTAGAACAAAAACACCTAAGTTTAAGGTGCCTGGTTTTGGACTCTCGGGACCTAAAGTCAAGGCACCTGAGGTGGATCTCTCACTTCCTAAAATGAAAGGAGAGCTAAACTCACCAAACCTCACTGTCCCAGAGTTAGACGTTGATGTCCCAGCAGGTAAAATTAAAGGGCCCACACTTAAAGAACCAAAGGTTGATATCAGGGCGCCTGAATTCAACATCGATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCCAAGGTCCCAATATTAAGGGAGATATAGGTTCACCAGACATGAATATGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATGTGAAATCCCCTGATATTGCAATTGATGGACATACAGGAAAAATCAAAATGCCTAAAATGAAAACACCCAAATTTAGCCTTCCTGGTTTTAAAGGACCGGGTCTTGATGTCAAAGGAGATTTGGATGGGCCAGATTTGAGCATGTCCTCTCCTAAATTTGATGCAGATATTCCTGGTCCTGACCTTGACATTGATGGACCCAAAGCTAATGTAAATGACATGACCCTTCCAAACATGCACCTACCACCAGGTAAAACAAAAACGCCTAAGTTTAAGTTGCCTGATTTTGGACTCTCGGGACCTAAAGTCAAGGCACCTGAGGTGGATCTCTCACTTCCTAAAATGAAAGGAGAGCTAAACTCACCAAACTTCACTGTCCCAGAGTTAGATATTGATGTCCCAGCAGGTAAAATTAAAGGGCCCACACTTAAAGAACCAAAGGCTGATATCAGGGCACCTGAATTCAACATCAATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAACATTAAGGGAGATATAAGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGTGAAAGGACCAAAACTAGATTTGAAATCCCCCAATGTTGACATTGATGGTCTCACAGGAAAAATCAAGATGCCAAAAGTGAAAACACCCAAATTTGGCATTCCTGGTTTTGAAGGATCAGACCTTGATGTCAAAGGAGATTTGAATGGGCCAGATTTGAGCATGTCCTCTCCTAAATTTGATGCAGATATTACTGGTCCTGACCTTGACATTGATGGACCCAAAGCTAATGTAAATGACATGACCCTTCCAAACATGCACCTACCATCAGGTAAAACAAAAACGCCTAAGTTTAAGTTGCCTGATTTTGGACTCTCGGGACCTAAAGTCAAGGCACCTGAGGTGGATCTCTCACTTCCTAAAATGAAAGGAGAGCTAAACTCACCAAATCTCACTGTCCCAGAGTTAGACGTTGATGTCCCAACAGGTAAAATTAAAGGCCCAACACTTAAAGAACCAAAGGTTGATATCAGGGCACCTGAATTCAACATCGATGCTCCCTCAGGGAAACTGAAAATGCCAAATTTCAAAGGCCCCAATATTAAGGGAGATATAAGTTCACCAGACATGAATTTGGCTTTCCCTGAAGCAGATGGACCAAAACTAGATGTGAAAGGACCAAAACTACATGTGAAATCCCCCAATGTTGACATTGATGGTCTCACAGGAAAAATCAAGATGCCAAAAGTGAAAACACCCAAATTTGGTATTCCTGGATTTAAAGGACCTGACCTTGATGCCAGTGGAGACTTGAAAGGGCCAGATTTGAGTGTGTCCTCTCCTAAATTTGATGCAGATATTACTGGGACTGATATTGACATTGATGAACCCAAAGCTAAGGTTAATGGCATGACACTTCCAAACATGCACCTACCATCaggtaaaacaaaaacacccaAGTTTAATTTGCCTGATTTTGGACTCTCGGGACCAAAAGTAAAGGCACCTGAGATGGATCTCTCACTTCCTAAAATGAAAGGAGTGATAAACTCACCAAACTTCACAGTCTCAGAAGGCCCTAACATTAAGGGAGATATAGGTTCACCAGACATGAATTTGGCTTTCCCTGAAGGAGATGTGAAGGGGCCAAAACTAGATGTGAAATCCCCAGATATTGACACTGATGTACCCACAGCAAAAATCAAAATGCCCAAAGTAAACACATCAAAATGTAGCCTTCCAGATTTTAAAGGACATGACATTGAAGGAGACTTGGAAGGGCCGGATTTGACCTTGGCATCCAAAAGATTTAGTGCAGAAACTGGTGCTTCTGATATTGACATTGATGCACGAAAACCTAGTTTAAAAGGTCCTAAATCAAACTTTACATTTCCAGATATGGACTTGCCATCAGGCAGTCTACAAATGCCCAGACTTAAGATACCCAAATTAGGACTGTCAGATCCTAAATTAATTGCACCCGAGATGGATGCTTCACTTCCTACGGTTAAGGGAGATAATTCAGCTGACTTTAATATCAAAGGCTATAAACCAAACATTTCATCCCCAGACTTTGATGGAGATATCCCTACAGGTAACATTAACATGACAACTCCAAAAGTTGATATCAAAAGTCCTGACTTAGACAGTGATATGACCTCAGGAAAACTGAAAATGCCTCAATTTGGACTTTCAAGTAATCTGCCAAAAAGCCCAAAACTTAAGGGGCAAATTGATGGCCAAGACATTAAGTTAACTCTTCCTGAAGCTGAGTTGAAGAGTCCCAAACTGGATTTGATATCTCCAGATACTGACATTGATGGTCCAGAGAGTAAATTAAAACCAGAATTCACAGCACCAAAATTTGATATTCAAGGAATTAACGAGCCTGATATAAAAGCTAAACCCAACCTGGAAGGGCAACATTTGAATTTATCTGCAATGGATGAGTTTGGGATTCCTGACTATAACACTCATGGACCAACAACTAATCTTAAAGGTCTCAAAACAGACTTTACACTTCCAGACATTGACTTGCCATCAGGCAAAGTAAACTTGCCTGGCAGTGGCCCAAATAATCGTCACAAATCTGACAGAAAATGTCACTTGGATAGAGATAAATCGTATGGCAGTTTGAAAGTTACGAAAGACTTAAAGTCTTTAGTATCAGGCATGGACCTTGAAGTGCCAAAACAATCCTTAAAGGGGTCAAAGTTTAAACTGCTAACACTAGTGTGATGGGACAGATTTTCATATTGATGGTAGACTTGTTTAGTACAGAAAGACAGGTCTTACAAAATAATTGATTTCATGTACATggtgaaaaatatatatcagggttatattaatgttcacatgtaaatattttagcaaaaacATATCACAAATATACACAGAAACCATTATATAGTATCTTTTGTTGCAACTTGTGTATATACATTTGTATGCTTGCTTAGTACCACTAGCACTTAAAATAGAACTGTGTGGGATTTAATGATGATTACAATGCATTTGAGTATTTTCgacattgtaatattttaatatttttgttaacatGGTTAAATGAAGTTTAAATGTTCAAAATCTTCATCAGTGTAAATGGCTAAGATTCATATCAAACTATTAATTTGTGCCTCAtttttattatgtgtattacacatttgttttatttgactAATACTGTTTGAGAAATTGTTTTAATAGTGATGACTTTGTATCCATTGTTTCaaagtaaatttattaaatcattagtTTCTTAATTATTCTTATTAGAATTTCAGTTGTTGCATGCTTTTGTATTGACATTTGGTATTTTAAAAACGGttgcaaaataaatgtttacaaaattattaGTCAAACCCTGTGTTATTCTACTtctgttaaaatgaataaataagtaaaatataataaactctACCAAATAGTATGAATTCAAGTATACTGAGAAATCAAGTCAATTGGGACAGTGTACCTTGGCAGCATTAGTTTTCTGATAGAAGCAACATGACAATTCATGTGACATTAAAAAGCTTGTGGTAAGTATCAAATAGGAACTGGACCCCAAATAGTTTGAGGTTGGGAAAAATGACATTCTTTGGTTCATTTTTTTACAAGGTTATATAATTGTCATGACtaatatattacacataattaTGCTGCATATATGCATAAGATGtactactgtaacaaaataaacataatgttaTTTCGAATGAGGTaaaaactgtatatttataattgaATGATTTTCAAGATGCCCCAAATGAACAAGCATGGATACTTACCAAAAATGACACTTACCTTTTGTGATGgttctatttcacccctcctaaccTCCAGGTGTGGTGTTATAACACATGGACATCCTCTAGCACGCATGTGCACCATCCAGAGAACTCCCACAGTCGTGCAATGACAGTAATATAATACTTACTGTGAGTACTAGAGATGCATCAGTCCGGATACTGGTATCGACATCAACCCAATATTTACTCATAAATATGCCCCAACACCAGCCATGTTACATAATTCTAATGTGTATGCTGTCATGCTAATGATCAGATAACATGAAataacagaaatctggatgtatttcacaattaatgatGGCAATTAAAGCAaacagactgcaaactgtgcacAGCTTGCCTGAGAGGGAATGTGGTTGTCAGTGGGAGATTCTGATAGCTCTCAAACAAGGTTTATtccattaatttttaaacattaaatagatctctctctctcaaatcaAAAAATAGCTGGAAATGTGACTTCACCTACTTATAACTGATAACTGAATACTCCCTATAATTTCTTCAGACAGTGGGTTCCactgttagcttgttagctagttATCATCACTCCCATGCTTACAGATTATCTAGGAATTGATCTGTTCCTGATGGTGTGTTCTGTACTTATAGTATGTACTACATTACTGTCATGGCATGACTTTGTGGGAGGTCTTGGCTTGGCATGGCATGGTGACTTGAGATTTTCCAGGtgttaaaacataaaacatgtttataCATCCACAGTTAACTAACCACCATTAACTACCATTTTCTACTATAATTTTACTTACTCAGTTCATATTGAATTTTAGAAAAGATGGATATGAATACTCAAGATTTTCTAAAtcctgttattgttgtttttgctgCAAGGAGTGTATGTAGAAAGTTACTTAGGCCAACATCTTCATATGTAGTAATTGTCATTTTAATTGTCATCTACTGTGTTCATACACTATTAGAATATGTTACTGATGAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219486 lncRNA upstream 89330 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA upstream 89330 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA upstream 89330 21078672 ~ 21084699 (+) False G185439
TU219491 lncRNA upstream 89330 21078672 ~ 21084699 (+) False G185439
TU219472 lncRNA upstream 113801 21059064 ~ 21060228 (+) True G185436
XR_003402980.2 lncRNA downstream 50240 21237304 ~ 21248130 (+) True LOC113528706
TU219537 lncRNA downstream 74511 21261575 ~ 21262176 (+) False si:dkey-28e7.3
TU219490 lncRNA downstream 140190 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA downstream 140373 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA downstream 140373 21327437 ~ 21339714 (+) False G185439
XM_034308757.1 mRNA upstream 685 21156418 ~ 21173344 (+) True abcc10
XM_026921935.2 mRNA upstream 20407 21143071 ~ 21153622 (+) False sp2
XM_026921951.2 mRNA upstream 20407 21143169 ~ 21153622 (+) True sp2
XM_026921942.2 mRNA upstream 20407 21144440 ~ 21153622 (+) False sp2
XM_026926035.2 mRNA upstream 32182 21131479 ~ 21141847 (+) True socs7
XM_034308923.1 mRNA downstream 2184 21189248 ~ 21198475 (+) False wipf2a
XM_026930296.2 mRNA downstream 2722 21189786 ~ 21198474 (+) True wipf2a
XM_026912525.2 mRNA downstream 13154 21200218 ~ 21206239 (+) True cdc6
XM_026917326.2 mRNA downstream 65081 21252145 ~ 21265055 (+) True si:dkey-28e7.3
XM_026936635.2 mRNA downstream 83395 21270459 ~ 21277952 (+) True krt99
TU218923 other upstream 1023135 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1302566 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1339615 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1473755 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1620507 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 2722 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 771824 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2745802 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2747068 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2747571 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile