RNA id: XM_026929071.2


Basic Information

Item Value
RNA id XM_026929071.2
length 2051
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113535596
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19959701 ~ 19964557 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acaaaaacctgttCATATGTGTGAGTCGGCTCTTCTAAAAGAGCCGGTTCAAAGAGCCGACTCGTTGTCGAACGACATCACTAGCTAGCGAAGTTGCTGAAGCTAACGAGTGCCACAGAGTGAAAAATAGGAGCAGCTTAACGGCTAATTGtgttattgtatttatattgaatGACTGTAGAATATTATTTGACAACTGTAGAATAGTCGCTGAGACTTGTGGGTAGACAGGAGGTGGATGCTGTAAGGTTGCTTTGGAGCATCAATGCTTCAAGACGAGACTGAAAGGCTaaaatatagctagctagctattggTTAGCTAGCGTGCTACGCTAAAGTCACCGCTTAGTGCCAATGAAGCTGAAGTAATTGCTTGGACAGTTCTTGTGCATGTGACTCAGCTAATAGCAGGCTGCTAATCGGGGCGGACTGAAAGGGTTTGTTGACATGTCGTCTCCATCACCGGTCCAGATAAGAGAGGCGAACGCGCATCTGGCTGCTCTGCACAGGCGAGTCGCAGACCTGGAGCAGAAACTCGAGGCAGCCGAGAACACGCTGCGGGAGCAGGCAGAGAGTCTGATCCGGAAAGACGAGCAACTCAGGGCAGCAACACAGGAAATAACAGAGAGCAAGGACAGGGAGATTTCCTACCTCCACGAGAAGCTTTGTCAGTCAGAGGAATCCATTCAGAAACTCCAGCACATGGTGAAGGAGAAAGATTCCCTGATTGGGCAGTTGCAGCACCGCTGCCAGCTGTTGGACAACATCTGCAAAAGCCGTCCTCTGTTAGACAGCATGCTGGCCCAGATGGCTGAGGCTGAGAGAATGGGGCCTGTTATTGACTTGGTAAACGCCACAGCAGACACTTCACTCACAGATGGAGAGTCCAACTGCAGCCCTTGTGGTCTCTCCAATCACAAAGACTTTTCGCTCAGCGAGGATGACATGGACGATCCAGAGCTGGAGGGCGTAATGTTTGGAACGACAGTATGAAAAGAACAGCGGACCTATCATGTTTCCATATTTTGTGTCTTGGGTAGAGCAGATGTGGAACTTTGTCCACTATGAGAAGCATTGGACAGTTTTTGGTTGATTCTTTTCATCCAAATGTGTATCCAGTCCTATTcatatccctttttttttttttttttttttttaaacactacatGAGTATGAATCAGCAAACTGCTCCCATGACATTATCTCAGTAAAGCTGGTTTAAATATGGTGGCCTAAGACAATAATTCACAAGGTTTTAACCTCTTATCAACccatttcttaacattttcattttaagatTTGACCACCAAAAGTGATGTATTTACACATGCaaggtttatcttttttttttttttttaaaaccataatTATTTGGGAACCGTCATTCAGCACGACGAAAAGCCTCACCCAATTTGTACATGACCTACATTCCTTGGTGTCTCATCATATTTGATTCTGTGCCACtaacatttttatacaaatgcaaatgttaCTGAGTAAATACAAACGTTACTCAGACATTGAGATGGGTCAGTCAAACAGAAGTCGATGTCTGGGTTGGTTGCAAATAATCTTCACACAATTTGTAAATGCTTTATTCTTAATTTAGTTGTAATTCCCTTGTCACTCctttaacattaatttttagatcacaaaaatccattttattttcagttacatACTGAATTCAGTCTGAACACATGCAAGTTTTAACattatttggaaaaaatgaaTGGTTCCAGTTTCCTCATCAGCTTGTTGGATGGTTTTTCATTTGTCTCTCAAAATGACATTCAAGTGGGTAACTGTTGCACATATTCTAGCTATCAACTGTCCTATTTGGAACATTACAGCTAGAAAAAAACTGTTAAGTATCTTACTCTGTTTTATGCAAAGGTGAAGTGTGCTACTGCATTATGGCACAGTGCTTGTGTTATcagggcatgtgtgtgttaccttttaTTTTCTACAGATTTAATTGGTGCCTCAAATGTGATCACTTGGTCTATGGAATTATTTATTCTACATTAATAAACTATTTTGCTATTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218828 lncRNA upstream 4661 19954594 ~ 19955040 (+) True G184900
TU218810 lncRNA upstream 12218 19921471 ~ 19947483 (+) True G184882
TU218759 lncRNA upstream 114901 19844047 ~ 19844800 (+) False LOC113534304
TU218741 lncRNA upstream 150447 19808713 ~ 19809254 (+) True G184823
TU218615 lncRNA upstream 255451 19703635 ~ 19704250 (+) True G184718
TU218933 lncRNA downstream 300379 20264936 ~ 20265620 (+) True G184988
TU218932 lncRNA downstream 301151 20265708 ~ 20320904 (+) True G184987
TU218936 lncRNA downstream 302042 20266599 ~ 20271344 (+) True LOC117598445
XR_004579121.1 lncRNA downstream 302989 20267546 ~ 20294374 (+) False LOC117598445
TU218987 lncRNA downstream 466572 20431129 ~ 20431338 (+) True G185042
XM_026929380.2 mRNA upstream 48492 19904158 ~ 19911209 (+) True ctns
XM_026924845.2 mRNA upstream 88238 19865798 ~ 19871463 (+) False ccl44
XM_026925573.2 mRNA upstream 99415 19854685 ~ 19860286 (+) True pole4
XM_034308398.1 mRNA upstream 114463 19836145 ~ 19845238 (+) False LOC113534304
XM_026926350.2 mRNA downstream 5000 19969557 ~ 19971347 (+) True gadd45ba
XM_026920781.2 mRNA downstream 112056 20076613 ~ 20103052 (+) True apc2
XM_034308563.1 mRNA downstream 141153 20105710 ~ 20120357 (+) False zgc:113223
XM_034308564.1 mRNA downstream 150930 20115487 ~ 20120357 (+) False zgc:113223
XM_026926084.2 mRNA downstream 150931 20115488 ~ 20120596 (+) False zgc:113223
XR_003403385.2 other upstream 88238 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 125287 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 259427 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 406179 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218923 other downstream 185414 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1225229 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1994331 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3968309 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3969575 23934132 ~ 23934203 (+) True trnaq-cug_11

Expression Profile