RNA id: XM_026929202.2


Basic Information

Item Value
RNA id XM_026929202.2
length 5597
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC113535669
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19324733 ~ 19403219 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacacacacgcgcgcacgcacacacacacacacacacacactcgcttacagacacagacacagacacagtgtgACCGTGCACTGTACTTTAGGCTTACTGTGTTTTTCAGTTTAGTGACTCTCAAATATGTGCAACTGGTCCTGGATGAAAAAGAGATTGTCGgcttttctcctttctcttcctcccaTTATATAATCCTAGGCCTTTGCTGTTTCCCAACTTTGGATACACAGCCAGAGCAAAACAAATATGGAAATTTAGCAGGACCTCGTACCCCTAGCAGATGTCTCCTGGGATCCCAATTCCCTATGCTGAGAAAAAAAGGTCGACGCTCCGTAAAactcattttccttttttgtccCATCACTATCACATGCTCAGGGAAAAAGGAAGAGGATTCTTGACATGTTTGTGAAGCAAAAGGATCTGCATTGAGAAAGTTCCCTGACACGGCTGCGAGACGAGGTAAACTTCTGCCTGGATTTAGAGTTGACTTGGAGTTTCCTAGAATACATAATGAACTTGGAGCACATCAGAAAGTGCAACTGAAGCACTTTGAGTCATTTGGCTAGACTTGGACACACTATCTGACTGAACCTTCTCTTGACCTTCTGCTTCTCTTGGGTCATCCAAGCCTTTTTGGAGAGCATCATAAAATGTGCCTTGATCAGGTGAATGCTGCAGTGCGCGTGCCTGTACTTCCTTGGTAAAAATCCTCTCCATGTGGCCATCTGAAAGTTGAAATGATGCACAAAGACCACCGCTTATTCCGCAAAGGTTCTCTGTTTAACTTCGGTTCTGGACGAAGAAGACACTCCTGCATTGGTTTTGATGTGGAGAATGGACCATCAGTGGGGCGAGCACTGGACTCTCAGGTCAGCCCGAGCTCTGGCCTGGTCCTGCAGGGCAACTTCCCCCACAGCCAGCGACGCGAGTCTTTCTTGTACCGCTCCGATTCAGACTTTGACATCTCACCAAAAGCAATGTCCCGAAATTCCTCCACTGCTAGTGAGCTggAAGAGGGCTTGAAACAGTGGGAAGTCAGTTGCCTGCCTCGacatgaagacatgattgTAACACCATTCGCACAGGTCCTGGCCAGTTTGCGAACAGTGCGGAGCAACTTTGCAGCATTGACTCATCTGCAGGATCGGGGAAGTTGCAAaCGGCCATCAGGCAGTAATCCTCCCTCTGTGTGCAAGCAGGGTGTGCCAGATGAGGCATACCAGAAGTTGGCCATTGAGACACTGGAAGAACTTGATTGGTGTCTGGACCAGTTGGAGACCCTGCAGACACGTCACTCGGTCAGCGAGATGGCCTCCAATAAGTTTAAAAGAATGCTGAACCGTGAACTTACCCAGCTGTCAGAGACAAGCCGCTCAGGAAACCAAGTGTCAGAGTTCATAGCAAGCACATTTTTAGaGAAACCACACGATGTGGAGATCCTGTCTCCACCACcaaaggagaaggagaagaagcgGCGTCCCATGTCTCAGATCAGCGGAGTGAAGAAGTTGGCACACAGCCCGTGTCTGGCCCCCAGCCGCATACCTCGCTTCGGGGTCAACACGGAGCACGAGAGCCTGCTGGCCAAGGAAATCGAGGACATCAATCGCTGGGGCCTTGATATCTTTAAGATAGCAGAGCATTCAGGGAATCGGCCACTGACGGTGATAATGTACACAATTTTTCAGGAACGTGACCTACTGAAGTCCTTTAAGATCCCAGCAGACACATTCATCACCTTCATGATGACCCTAGAGGGCCACTACCACACTGATGTCGCCTATCACAATAACATCCATGCTGCTGACGTAGTGCAATCCACACATGTTCTCCTCTCCTCACCTGCTTTAGAGGATGTCTTCACTGACCTTGAAATCATGGCTGCTTTGTTCGCTAGTGCCATACATGATGTTGACCATCCTGGAGTGTCAAACCAATTCCTCATCAACACCAactCTGAGCTGGCTCTGATGTACAACGATGCTTCTGTACTGGAGAACCACCACCTGGCCGTGGGCTTTAAACTTCTACAGGAGGAAAACTGTGACATCTTCCATAACCTGAGCAAGAAGCAGCGGCAGTCACTGCGCACAATGGTCATCGACATGGTATTAGCCACAGACATGTCCAAACACATGAATGTCCTGGCAGACTTGAAGACCATGGTTGAGACAAAGAAAGTGACCAGTCTCGGAGTATTGTTACTGGACAACTACTCGGACAGAATACAGGTTCTCCAAAACATGGTCCACTGTGCCGACCTCAGCAACCCTACAAAGCCTCTGGAGATCTACAGGCAGTGGACAGACCGCATCATGGTGGAGTATTTCACCCAGGGTGACCGGGAGCGAGACAAAGGCATGGAGATTAGCCCCATGTGTGACAAACACACTGCTTCAGTGGAGAAGTCTCAGGTGGGCTTCATTGACTACATCGTGCACCCTCTCTGGGAGACATGGGCTGACCTCGTCCACCCGGATGCCCAAGACATCCTGGACACTCTGGAGGACAACCGTGAGTGGTACCAGAGCATGATCCGCCACAGTCCCTCACCCCCGCCCGAGGAACAGGACTCAAACGGTGCCATTGGAGCCTCCACAAGCGAAAAGTTCCAGTTCGAGCTGACGTTGGAGGAGGAGGGCGAGTCAGACTCCGAGAATCCTCAGGAAGCACAGCACGCCAAGCCTGAGAGCACCACGACTCGGTGCCGCAGGACGTTGTCTCCTGACACAACAGACAAGGAGGCTGTGAGAGAATGAGACTAAAGAGACAAAATGTGCATAGCTAGGTGCAAAGCACTTCTGTCCTAATGACATGTCTCAGCGAAAATTTGCTCCTTAAATCTGTGATGAACTTCAGTGTGGCTGTAGCAGGCTCCCACTGAGCGATGCACCCCACACCAGCTAATGAGATAACTCCTCATTTCACCTATTAGCcacacatttcctgtttttcctgcCAGATAAGCCTTTTAGTCCTAGCTTCTTAAGATGCATTTGTGTCTAGCACACAGGTGGCTGTAATGATCACTCATTGACTGAGGAGAGATCTGAGGATGGCTCGGCCTCTTCAGGGTCTATTAACAAAGCAAGGAGATCTTCTGAGAAAGAGAGTCTTCCTTCAAATGATGTACATGTTGTCTATAGAggaaattgtaatatttatggTAAGCTAACAGGGTctaggaactttttttttgcaccgtACCATTAGTTTTGGACAAGTAGGAGtttcatttatcttttaaatgattaatttagcattcatttgtattttcaatattttagtCACTTTGATCAGATGAATGAACAAGTGACAGTCGTGCCAAATATTAGCTTGAGATGAAAATATGACACTAATAACCTCaggatataaataattatttcactTTAATGTAGCAAGGTACCCCTGTATATTACCCAGTGCATCTTTATTATACgccactaaaaataaatcaccCATTTACACTGGTATTCACACTTACACCTCAATATTCACCGTTACATCTTTACACGTCTTCATGTATCATTAATAACTGATTAGATCTTGATATTGTGAAGATGTTAAATCTGATGTTAAAGAGGCACTGCTTTGCTCTAACTCAGCGTAAAAATAATAAGAGTATcgatttgttcattcatttgttttatgtgAAAATATCGATGGTGTGCAATTTGTGTAAATCCCAGTCATGGTGCAAGGTTTTCAGATCTGAATTATTTTATAGTGGTTTAAACcagcttatgttatagcaatgAGGAATCCAGATTGTAAGTGTAGCTTTACAATACAAgatattttaaaggttttatatatTTCCAAGTTTCCAAATATTTCCCTTGCAAGTAGaagtttgaattatttttatttatggccTCATTTTACTCTTTAACACAACTAGTTTTCTTCAATGAGAAATCCACCCTGCTTGGTTTGCATGTTAATCCTTATAACTAACACACAATCTTCATTTCTATCCATGATTTATAAAAGTCAGCTTTTTAGTTTTAACACTGACAGGttagtctattttcactttgggtCACTGTGTCCTACACGTCCCCAATATCTTCTGTATGCACTATGTctacgctggatttctcattaatatgaaagtgaatgtcactgaaaaatggtgagtgagaaaagaagttcTTACTCTTTTATTCTTAGGAGATAACAGTCAAACCTGATCATTAACCCTTATGTTTGATATcattggaaattttttttcctcctattaAACTccactgtaactgtgctagcaatgttCTCCTGTTATGCCATAGCAGCAGACAACCTCAAACTTCTCatgggaataacaaaaatacagcatcaacaaAAAATTAGCAgcagaatcactaagcacatcacaattATTTCAGTCGAAAtatatttcatgtgtttcaggatggatttttcctttaatgttgctgttgtaaAGTTAATGACTACATGAAAGCTAAACGCTCAAGTCTGAATGCGCAAATATACATTTCAGTTTCTCATTGAGTGTGTATACTGAACCCATATAGAATGAACTAGTACAGCTGAGTAAAATATCCAGGGGTACCCATTTCTGATCTTACCTTCTGATCACCACTTCCACTCGTGTTTGTATCGTTTGTATTCGTTTTACCTAATGTCCAGTTTTAACATCATTATCTCAAACGTATTATTGACAGCTTGCAAACTGCCACAATTTGCTGCCTCGATTAAGACATGCCAGATATTAGCCTGTGATTTTGATCTGAGAgtcttgaggttttttttccctccaggaATTTGAACCAGAAATAATTCCGGCACATTTAAAGGGCTAGAGATAAACCAGGATCCAAGACAGCTGACTGAAAGCCTTTCCCTGCTCTTCATTGACATCACTTCATTTTTTCAACTTTAAGTGTTTTCATTGAGGGTTTAATCCGTATATTTTTGGAATAAACTATAGATGACTagacaataatttaaaaaaaaacagactgattataatatataattacattattagtgttttggtgtttttggtCTCTCCTGTATTTCATCACAtaaagtaaatacagaaatcCCACTTTTCTTTccattaatatattaaacagAGGAAACACTAACACGGTGGTTCTTTCAGATATGAGTTGACCGAGTGCAGTCCATTCAATGCCACCAAACTGCACTAAAATGTGCACagatttcacacacatgcacaatggGAGAGCACTCCAATGCCATAATGATGCCGTTCAGTGAAGTCATCTATCCGCTAAAAAGCACAGTTTTCGTGGTTTTTATGTtgtttcatgtcttttttttttttatctttactgATGTGCCACATTTCCTCTTGATTCTCTTTACTGGCAAGTCCTGAAATTGCCAAACTTATTTGTTGTGTTCATTGTTTGATGGCATTGTGTCTTTTTTCTGAAGAATAAGAGTGTTacttcatgtaaaaaaaaaataataataataatgttttgtcACTCCTGTACCTGTTTCTGTACCTTCATGTTCCACATTCAAAGCCAAAAACTCCAGACTACTTCAGGTTGTTCTCTAGAACCTACGTCAATAAATTAACTTAAGCTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218173 lncRNA upstream 283380 19081252 ~ 19081485 (+) True G184340
TU218141 lncRNA upstream 352253 19012407 ~ 19012612 (+) True G184309
TU217958 lncRNA upstream 469990 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 759943 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 767625 18593698 ~ 18597240 (+) True G183797
TU218370 lncRNA downstream 56599 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 58605 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 83153 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 83153 19486372 ~ 19487778 (+) True smim7
TU218480 lncRNA downstream 123658 19526877 ~ 19545502 (+) False LOC113546543
XM_026910829.2 mRNA upstream 41894 19319287 ~ 19322971 (+) False LOC113524462
XM_026910899.2 mRNA upstream 41894 19319424 ~ 19322971 (+) False LOC113524462
XM_026910752.2 mRNA upstream 41894 19319429 ~ 19322971 (+) True LOC113524462
XM_026928468.2 mRNA upstream 55404 19300621 ~ 19309461 (+) True mpv17l2
XM_034308908.1 mRNA upstream 67317 19289267 ~ 19297548 (+) True LOC113533188
XM_026919355.2 mRNA downstream 2467 19405686 ~ 19416175 (+) True rab3ab
XM_026919525.2 mRNA downstream 26692 19429911 ~ 19439181 (+) True klhl26
XM_026930849.2 mRNA downstream 38945 19442164 ~ 19458174 (+) True crtc1b
XM_034308396.1 mRNA downstream 38945 19442164 ~ 19458174 (+) False crtc1b
XM_026930857.2 mRNA downstream 38946 19442165 ~ 19458174 (+) False crtc1b
TU218227 other upstream 95643 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1568246 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1583052 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1613363 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 128862 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 147163 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 292025 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 424767 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 462579 19865798 ~ 19871463 (+) True ccl44

Expression Profile