RNA id: XM_034309006.1


Basic Information

Item Value
RNA id XM_034309006.1
length 2231
RNA type mRNA
GC content 0.54
exon number 14
gene id anos1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17598464 ~ 17636395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGAGGCGACTCTGCACTTCAGTTCTGACGGCGCGCGCGCAGCACACTCTCCGAGCGCGTCAATTTCAAGTGGGATTTAcgcatatatatacatttatataaaaagctTCTCGAGACATTGGAAGTGCATGTGACCTCGAAGGGAAAAGTGACAGCAGGACCATGTTTGTCTCCGGGGTTGTGCCGGTATTGCTGTGCTGCGTTGTGCAGTTGAGCGTCGCGCGCAGGAGCGGTGCTGAAGACGGAGAGACTGTGGAGAAGATTAACAGCGCGCGCTGCACCTCGCGCTGCCTCACTCTGCACATCACTCAGCTCACCTCCGCCTTCAGACGCCTTCAGagtgATGAGGTTCTGGGCTGGTGCGAAAGCCATAGGAGATGTGCTCAGTGCCTACAGCCATGCAAGGAATTATGGGAAACCAGGAGAGTTCTTTCTCACAAGTTTTGCGAGCACCACGAGTGTGTGACCAGTGCTGAGTTCTTGCAGTCACTGCAGATGCAGAAGCAGGGCGATTGTCCTTCTCCTCAAAGAGCGTCAGGCTTTGCAGCCGCCTGCGTGGAGAGCTGTAGCGCCGATCGTGAGTGCTCTGGCTCTAAAAGGTGCTGTTCCAACGGATGCGGCCACACCTGCCAAGCACCAACCAACCTTTATAAAGGCGTCCCCCTGAAGCCAAGGAAAGACATGGCCTTTTTAGAGGACCAGTACGGACAGCTGGAGGTGACATGGATGTCTAAGTTCAATGTGTCTATTGAGCCAGTGCTGTATATTCTGCAGAGGAGATGGAACCATGGGATTCATCCCAGCGAGGACGACGCCTCACCCTGGCACACTGTTATGATGaCCATGGAAGAGCGGGCCTTGCTGAAGGATGTCCGGCCCCACAGGTGGTACCAGTTTCGGGTGAGTGCAGTGAACAGCCAGGGCACACGTGGCTTCACCACTCCCAGCAAGCACTTCTTCTCAACACGAGACCCGTTGCCCCCAGAGAGGCCGCAGAACATCAGCGCTGGGAATCAGACTGCGAGCGCTGACGGCAGGGTGATCGTGCTGCTTCGCTGGGACCCCCCCAGAGAGGGAGACCTGCAACTCCACCATTACAAAGTGACCTGGAGCGGCCCGAGTGGAAAGGAAAGCAGCAGGGTCGTAGACGGGACTCTGACGGAGATGGAGCTGGGAGGACTCCAGCCagacacacactacatagtgaacATTCAGGCAGTTTCTTTCTGGGGACAGAAGCGGTTGAAGAGTGGCCGTGCACAGATCTCCTTCAAAACCGCTGCTTCCACCGGCTCCTCGCCAATCTCACGGGACTTTTCCAACGAGCTGCCTATCTCCCGTTCGTCTCCCAGAGTCCTCCGACTTGAGGCCGCGGCTCCCCACTACCACAGCAACCAGCTGCAGGTCAAGGTGTTTTGGAAGAGTCGACTCCCAGAAAACCAGAGGGGTTCCACTTCATACCTTTTAAGTTGGTTTCCAGAGGTATGTGCTAATAACAtgaccaagagagagagaacggcTACTGTACAGGGCACACATTTTGTCATCACAGGCCTTCTCTTTGCCTGTAAGTACAAAGTGACTGTGACACCACTCTCTGAGAATGGAGAGAAGGCCGGGGCCGTGACCTCTGTCACTACCCCACAGTGCTCGACGCTGAAAGGCCGTGGGAAGAAGCTACTGTCCTGTGCCCATGATGATCGCCATCTGCAGGCAAAGAAAGCACTTCAGCGCCCCGAGAAGTTGTTAGCAGTGTTTCAGACGGTGAACGGCTCCCTGGAAGGTCTGTTCAGCTGGCAGGTGTCTGAGATCACACCCGGCCAGACACCCATCACAGGATTTCAGTTCTCCTGGGTCAAAGTCTCCAGCAGCCATGCGAACAAATCTTCAGATTCACTCATCTCGCAAACGCTAAATCTGGCACCTGATCAGCGCTCGGTCAGGGTGGGGCAGCTCCAGCCAAAGTGTGTGTACAAGGTGCAGGTGCAGGCGTTGTGTGAAGCAGGCAGTGGGCCCTCAGTGGCCAGAATGATAAACACTCCACAGCTTAACGGCACGCTGCTATGAGGCTGTACATAAACATCTGATCTCTCCGGTTCCCTCCAGAAAAATGTATTTCCTCAGCTGATATGCTTGGAACCACGGTTACATTGCATGATGCCAACATTTCAAttaaagtctaaaaaaaaaagattcagtaaCAGTGAAAGTTTTGTAAGTTAAATGTTCA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216676 lncRNA upstream 14679 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA upstream 18350 17577740 ~ 17580114 (+) True G183058
TU216632 lncRNA upstream 147728 17450457 ~ 17450736 (+) True G183032
XR_004579106.1 lncRNA upstream 175144 17416730 ~ 17423320 (+) True LOC113535983
TU217213 lncRNA downstream 88368 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 251732 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 266390 17902785 ~ 17902984 (+) True G183578
TU217351 lncRNA downstream 279608 17916003 ~ 17916210 (+) True G183585
TU217463 lncRNA downstream 530227 18166622 ~ 18237120 (+) False LOC113526284
XM_026931656.2 mRNA upstream 53397 17534444 ~ 17545067 (+) True cp
XM_026917828.2 mRNA upstream 65786 17509244 ~ 17532678 (+) False LOC113528887
XM_026927180.2 mRNA downstream 2394 17638789 ~ 17645112 (+) True senp5
XM_026927190.2 mRNA downstream 2394 17638789 ~ 17645112 (+) False senp5
XM_026915944.2 mRNA downstream 12540 17648935 ~ 17669132 (+) True phka2
XM_026915964.2 mRNA downstream 12540 17648935 ~ 17669132 (+) False phka2
XM_026915954.2 mRNA downstream 12540 17648935 ~ 17669132 (+) False phka2
TU216628 other upstream 153405 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 382581 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 568520 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 675542 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 1013521 16583303 ~ 16584943 (+) True G182819
XR_004579060.1 other downstream 35776 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 35776 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 137318 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 159050 17795445 ~ 17796619 (+) True G183549
TU218227 other downstream 1618562 19254957 ~ 19269222 (+) False adgrl4

Expression Profile