RNA id: XM_034308426.1


Basic Information

Item Value
RNA id XM_034308426.1
length 3559
RNA type mRNA
GC content 0.47
exon number 17
gene id ntrk3b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7992004 ~ 8124785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGCGCGCGTGCGAACTTCTCTTCCGTCCTTTTTCTGACAGACACATAGAGAACTGGACAGGACTGCAGATCCTGAAGGACGTTGACATGGAGCTGTACACGGGACTACAGCGGCTGACTATCACGAACTGCAATCTACGAACGATTCAAGCGCGTGCATTTGCACAAAACCCTCACCTCCGTTACATAAATCTGTCCAAGAACCCACTTACCACTCTCTCCTGGCAGCTCTTCAAGAACCTTCAGCTGGTCGAACTGCGACTGGAGGGGATTGTGTTCAGCTGTGGCTGTGAGATTCGTTGGATCCAGCTGTGGCAGCAGAGAGGGGAGGCAGGTTTACACACCCAGCAACTCTTCTGCAAGACCGGCGCCAACAAGATCCGCCTGCGTGCAATGAACATCgctcactgtgACCTCCCTGATATCAGCgtaacacacagtaacctgaCGGTGATGGAGGGAGACAACATCACAGTCAGCTGTAACGGTTCAGGTTCTCCATTACCTGATGTGGACTGGACCGTGAAAGGACTTCACTCTATCAACACACATCAGTCAAACGTCTATTGGCCAAACATTCACTCCATCAACCTCACTCTCGTCAACGTAAGCCGGGACGACAACGGCTTCGTCCTCACCTGCATCTCTGCAAACGTGGTCGGGATGACCAACATGTCTCTTCAGCTGGCTGTGCAGTttCCGCCAGTGATTATAAAGTTGGAGGAGCCGGAACGCAGGCACCACACTTGCATCGAGTTCACCGTGCGAGGTTTCCCTCATCCCACGCTACAGTGGTTCCACAAAGGCCGCGAGATCCAGGCCCCGTACATCCACACTGAGATGGAGCTTTACCAGGACTACCTGGAAGGCTGCCTGACTTTTGAAAACCCTACACACCACGATAACGGGAACTACACACTGGTGGCCACCAACTCGCTCGGCTCAGTCACCAAAACTGTCTTCGGCCATTTCCTGGAGGCGCCGCCATTTTTGGAAGAGGAtgGAATTATTGAGTACGgaGACCCTACACCTGGGAACGATGTGAACAGGCCGGACGAGGACTCATTCGGGATGTCTATAGCTGTTGGATTGGCTGCTTTTGGCTGCGTGTTTCTCATCGTGATGTTTGTGCTGATCAACAAGTACGGCAGACGCAACAAGTACGGAATGAAAGGTCCTGTAGCAGTGATCAGTGGGGAGGAAGACTCCGCCAGTCCACTTCATCATGTCAATCATGGAATCATCACGCCCTGCACACTGGATGCCAGTCCCGATGCCGTGGTGATCGGGATGAGCCGTATTCCTGTGCTGGAGAACCCGCAGTACTTCCGGCATGGACACAACTGTAACAAACCAACCACCCaTGTCCAGCATGTGAAGCGGAGGGACATTGTTCTGAAGCGGGAGCTGGGAGAAGGGGCTTTCGGCAAAGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCTACCAAGGAGAAGATGCTGGTAGCTGTCAAGACCTTGAAAGACCCGACTCTGGCCGCCAGAAAAGACTTCCAGAGAGAAGCTGAGCTACTCACCAACCTGCAGCACGAGCACATTGTGAAGTTTTACGGCGTGTGTGTGGACGGCGACCCGCTCATCATGGTGTTTGAGTATATGAAGCATGGAGACCTTAATAAGTTTCTGAGGGCTCATGGTCCAGACGCCACCATTTTGGTGGATGGCCATCCGATGCAGAGCAATGGCGAACTTGGTCTTTCTCAGATGCTGCACATTGCCACACAGATTGCAGCTGGCATGGTGTATCTGTCCTCACAGCACTTTGTGCACCGTGACCTGGCCACACGCAACTGCCTGGTGGGAAACGGCCTCCTGGTGAAGATTGGAGACTTCGGCATGTCCAGGGACATCTACAGCATGGACTACTACCGGGTGGGCGGACACACCATGCTGCCCATTCGCTGGATGCCACCCGAGAGCATCATGTACCGGAAGTTCAGCACAGAGAGTGACGTGTGGAGCTTCGGCGTCATCATGTGGGAGATCTTCACCTACGGCAAGCAGCCGTGGTTTCAGCTGTCCAATAACGAGGTGATTGAGTGCATCACACAAGGGCGTGTTCTGGACCGGCCTCGTCTTTGTCCCAAGGAAGTTTACGACCTCATGCTGGGCTGTTGGCAGAGAGAACCGCAACAGCGACTGAACATCAAAGACATTCAGAAAGTCCTGTATGCCTTGGGCAAAGCTGCACCGGTCTACTTGGACATCCTTGGCTAACGCTGGTGCGCTTCGTCAGGCCTGAGGCCAACACAATCCAGGAGAAACCAAACGGCCCCTAACCTTACTGCACCACTGTAAAATCACCTACATGTCGGGGATGGACTTAAGTGCCTGCaacaccattttttttcaatacactcgaataaaaagtacaaaatatttaaagaaaacttttacattttctttactcGTACAGTATATAGTGTACAGAATTCTACAAAGCTAAACATTTTCCTAAAAACTGATCAATAAAAGACAGCGAAGTTGTGTAAAAGATATGTTGCCTTTGAAATGGCAACCACGTATCTAATGAACAAAGCTTTccagtgtttcattttataaacgtatatatacatatatgaatatattttttatttatttagtttcattCTTGAAGGTATGGGTGCCTGTCGTGTTTAGCACTGTTGATAGATCTTCATTTCAAGATGGACTTCTGATGTTGTTTTCTCTGGCACATAGTCGGCAAAGCCTTACTAAATTTCCGTTACTCTAGTTAgcatctgttttttgttttttgttgttgtttttttttgcttttccccctttcttttttttatactctGCCATTTTGATTTGTCAGTGACGAGTGCTTGAGTGGAAAAAATCTTTAGAATACTAAAATATAGGTATATTTTAATTGTATGTGATTGTACATACTGTAAATTTCTATACTGGTCagcttaaattattttttttctttatatgtttgtttttgttttgttctttggtTGGTAGCATCGATTTTCTAAACACAGCCATGAGAGGGCATAAATATTGTTCAGTGTGACCACTATTGTATCACTTTAATCTCGCGCTCTACAGTCAAATCATTTACAGTTTGAAGAATCTGCTGTAAGACAGTCAAAGGCAAGTGAATGTTTGTGGAGGAAATGTCAACTATCTGCAGAATCACATTCAATGGTAAACTGCTTTACTTTCGAACTTGCCAAAAACATAAACTACAGTGCAAGCTTTGTGTCACTATTCTATAATGACACCCACCTAAGCAATGTTTTTGCGAATCTTCATAGTACGTGATATCAGTGCCATTGCATCTGAAGTTAACGATCTCATGGTGTTTGTTGTCTGTAGCGAAACAATTCTGTGTTCTTTTGCAATGGGAGTGTTTGTAGTTATTTTACACCAAATCTTTCACAGCGTCACTGTTTTGACAACTTCCGATTCTCTTGCCTCTTTGCAGTACCGGAAAGGTTTGCTaaagacaaatgaaaaatgtatgtttagaagatgtattaaataaacattcaaaTATGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210491 lncRNA downstream 64946 7926293 ~ 7927058 (-) True G177807
TU210390 lncRNA downstream 236986 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA downstream 241198 7728913 ~ 7750806 (-) True G177733
TU210367 lncRNA downstream 315334 7675916 ~ 7676670 (-) False igf1rb
TU210347 lncRNA downstream 440254 7551522 ~ 7551750 (-) True G177691
XR_003403692.2 lncRNA upstream 146924 8271107 ~ 8275360 (-) True LOC113536653
TU210754 lncRNA upstream 199436 8323619 ~ 8324164 (-) True G178057
TU210939 lncRNA upstream 397618 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 469003 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 586994 8711177 ~ 8712118 (-) True G178398
XM_034308973.1 mRNA downstream 146977 7818236 ~ 7845027 (-) False sv2ba
XM_034308972.1 mRNA downstream 146978 7818236 ~ 7845026 (-) True sv2ba
XM_026930641.2 mRNA downstream 154596 7818236 ~ 7837408 (-) False sv2ba
XM_026930903.2 mRNA downstream 181325 7809390 ~ 7810679 (-) True mespba
XM_026930905.2 mRNA downstream 190452 7799665 ~ 7801552 (-) True mespaa
XM_026930844.2 mRNA upstream 49078 8173261 ~ 8180651 (-) True mrpl46
XM_026930771.2 mRNA upstream 183096 8307279 ~ 8312494 (-) False LOC113536672
XM_026930770.2 mRNA upstream 183096 8307279 ~ 8312494 (-) True LOC113536672
XM_026930584.2 mRNA upstream 205905 8330088 ~ 8366987 (-) False fes
XM_026930585.2 mRNA upstream 205905 8330088 ~ 8366987 (-) True fes
XR_004579066.1 other downstream 403189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 403189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 403189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 403189 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 508046 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 117923 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 118548 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 120466 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 122520 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 123507 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile