RNA id: XM_034308480.1


Basic Information

Item Value
RNA id XM_034308480.1
length 3066
RNA type mRNA
GC content 0.47
exon number 18
gene id mfn1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6900248 ~ 6913318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtctatgggtCAAATATTTTCCTGTAGCTACCGCTAGTATGTCAAATTCAAAGAGGATATAAGCAGTCTCTAAATCGGTAAAGACATGGACCAAGAGGACCGCTCTCCTCTCAAACACTTTGTCCTGGCCAAAAAGAAGATTGGTGATGTTTTTGAGCAGCTGCTTAATTATGTCCAGGACGGTTCACAGTTTGTTAaagATACATGTTATAATGAATCGTTAGAGCACATTGCAAATAGAGATCAGTTGGAGGAGATAGAGGCGTACGCCAGTAAATTAGCAGTTATAAAAGAGGTGCTGGCTCGCAGACATATGAAGGTGGCCTTTTTTGGCAGAACGAGTAATGGAAAGAGCACCGTTATCAACGCCATGCTGCGTGACCGGGTGATGCCCAGCGGCATCGGCCACACAACTAACTGCTTTTTGAGCGTTGAAGGCACTGATGAAGATAGGGCTTATCTGAAGACTGAGGGAtcagaggaagagaagagcatCAAGACTGTCAATCAGCTGGCTCATGCTCTGCACATGGATGAGAGTCTTGATGCTGGCTGTCTGGTTAAGGTCTTCTGGCCCAAAATGAAGTGCGCTCTTCTTAGGGATGACCTAGTACTCATGGACAGTCCTGGGACTGATGTCACCACACAGTTGGACAGCTGGATAGACAAGTTCTGTCTGGAtgctgatgtgtttgtgttggtggCCAACTCTGAATCCACACTAATGAACACGGAGAAACATTTCTTCCACAAAGTAAACGAACGCCTTTCAAAGCCCAACATTTTCATCCTGAATAATCGCTGGGATGCTTCCGCCTCTGAACCTGAATACATGGAGGATGTCCGTAAGCAGCACATGGACCGATGTGTGAACTTCCTGGTGGAGGAGCTCAGGGTGGTGGATCGCCAAAAGGCTCCCAATCATATCTTCTTTGTGTCTGCCAAGGAGGTGCTGAACTCCAGAATGCAGCGGGCGCAGGGTATGCCAGAGTCTGGTGGAGCATTAGCAGAAGGCTTCCAGGAGAGACTGAAGGAGTTCCAGAACTTTGAGAGGACGTTTGAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAGCAGCACACAATCAGGGCAAAGCAGATCACTGAATGTGTTAAAGGCATCATGGATCAAATCCACATTGCTGCCGCTGAGAAGAGGGTGGCCTCTctggaggagagagagtatcTGATCGACCGCTTGGAGTTTGTCCGAAATCAGCTCAACCTTCTCATTGAGGatatcaaaaagaaaattaagCTGGTCTCAGAGCAGGTGGCCAAACAGGTATCGAATGCCATGGCAGAGGAGATCTGTCGACTCTCAGTGCTCATAGACGAGTTTCATTCAGACTTCCATCCATCTCCACACGTACTAAAGATCTACAAATCAGAGCTGCTTAATCATGTGGAGAAGGGAATGGGAAAGAATCTGGCTTTCCGCTGCTCTAACGCCGTCAACGCTTCTGTGCAGTCCTCTCAGAAAGAAATGATCGAATGTTTGCAGCCTTTGCTGCCCCCTGATGTTCAGAGCCAGATCCACATGCTAATTCCTTCCAGAAAGTTTGACCTCAGCTACGACCTGAACTGCGCCACGCTCTGCGCCGATTTCCAGGAGAACATCGAGTTTCAGTTCTCTCTTGGCTGGACTGCTCTGGTCAGCCGTTTCCTCGGCCCGGCCAACGCCAAGCGCGCCCTCATGCTGGTGGATCAAAACCTCCAGCTCACACGTCCTTTGGCCACCACTCCAACAAGTGGTGCCATTGCACAGGCTCCACCCCCTAGAGCTGCTGCGGGTACTCCGAACCAATCCCAGGCTGTGATGAGCCAGGAGGAGCTGATGATGTCTATGGCTGCAAATCTGGCTTCCATCACCTCACGCACTTCCATGAGTGTGGTCATTGTCGGGGGAGTGGTGTGGAGGATGATAGGCTGGAGAGTCATCGCTCTATCCTTGAGTCTTTATGGCATGGTGTACTTATATGAGAGACTCACTTGGACCACCAAGGCTAAGGAGAGAGCACTGAAGAAGCAATTTGTAGATTACGCCACCGAGAAACTCCAGATGATCGTCAGCTTCACCAGTTCAAACTGCAGCCACCAAGTGCAGCAGGAGATAGCCAGCACGTTTGCCAGGCTGTGCCAGCAGGTGGATGTAACCCAACGGGACCTGGAGAGAGAAATCAACCGGCTGACGACAAAGATTCAGCAGCTGGAGACGGTCCAGAGCAGCTCCAAATCACTTAGACACAAAGCCACAGATTTGGAGAGGCAGCTGGAGAGCTTCACGAGCCAGTATCTCCAGCCACAGAAATGAACTCCCCATTCTCACTCAGCGCCTCGGTCTCAGGCCACCTGCCACAggacttttgttttattccaccAGGAAGGATCCACACAAGACACGTAGCAGCAGTGTATCTGCACTTTCAAAAAGGTCATCAGTGAAAAACTgtcacatacatttacaatgtCATGGGTTGGTTTCTGGCTTTCGTACTATAAACAATTGAGTTGTGGTTTGATTGCGGTGTCTAAATTGAATCTGTTTTGTAATGATATCTGATTGACTATCTCTTAAATCACACTACTGTAAGaactgaaaggaaaaacatgaaaacaatgaCGAAAAGGGCTGAACTGTAAAGTTCTTCATGGCACTTCTCAGaacactgtaaagcagtttttACTAAACAAAACCAGATTACTTTGTTCACATCCAGCTGACTTGAAACAAAGCCCTTTTCTGAACCACGTTTTCTAGAAGGGAAAATTCAAGAAGTGTTTATCTGAAATCAGTATTTTGTAGATAGCCTTTTGATCAGTGCCTATTTTCGATATGTTCCTCTAAATCCTTTCTATGATTCTAACCCATTGTCAAGAGTTTGTTTTTGGACTCTGTGctttgtaaaaatgtgaaatgttcagatgaaaaaatcagtttaaaaaattagtagagaacataattaaaatattaccCATGAATGTGTATAA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209925 lncRNA downstream 40759 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 161640 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 310952 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 310952 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 348666 6551325 ~ 6551582 (-) True G176991
TU209973 lncRNA upstream 145227 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 224324 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 242923 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 354256 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 376580 7289885 ~ 7290092 (-) True G177455
XM_034308838.1 mRNA downstream 13835 6861351 ~ 6886413 (-) False shroom2b
XM_034308837.1 mRNA downstream 13835 6861351 ~ 6886413 (-) False shroom2b
XM_026930660.2 mRNA downstream 13835 6861351 ~ 6886413 (-) True shroom2b
XM_034308839.1 mRNA downstream 28001 6861351 ~ 6872247 (-) False shroom2b
XM_026930663.2 mRNA downstream 38900 6856755 ~ 6861348 (-) True LOC113536608
XM_026930692.2 mRNA upstream 27463 6940768 ~ 6954744 (-) True si:ch73-100l22.3
XM_026930342.2 mRNA upstream 48331 6961636 ~ 6979476 (-) False mafgb
XM_026930343.2 mRNA upstream 48331 6961636 ~ 6979107 (-) True mafgb
XM_026930885.2 mRNA upstream 74998 6988303 ~ 6995568 (-) True pycr1b
XM_026930786.2 mRNA upstream 95993 7009298 ~ 7011515 (-) True LOC113536680
TU209010 other downstream 1191983 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1191983 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1585994 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1609654 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1703430 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 568144 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 667129 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 667129 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 667129 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 667129 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile