RNA id: XR_003403680.2


Basic Information

Item Value
RNA id XR_003403680.2
length 1576
RNA type misc_RNA
GC content 0.48
exon number 10
gene id LOC113536390
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7122385 ~ 7132468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacacacaaaatataccCTAATTCATTAAAAGCTCGAGCTGAAGTTAAAATGCCAGCAGTAACGTGAAAGACCCAGGAATGAGCGAAAGTCTGTTGTTACTTCTGATGTCAGTCCTACTTTTGCCTGGACATGTGATCATTACTGATGGAGCTACTCTCAGACCAGAACTTACTGGGCCTAGTATGGCCTTCCTGAAATCTACAGTAACGTTTGAATGTAAGCTGTCGGAATCACCATCACCTCTGACCTTTGAACTCATAAAGGGCAATGATGAGGTCCTTGCCATAAACGATAATCCAATCACATTTCCTCTAAAAGTCAACAAGGGGTCAGAGGGCGAGTATTTTTGCAGAGTGACAGCAAGAAATCAGACAAGCACAAGCAATCCAGTGTACTTACAAGTAGTGATTCCTGTCCAAGGCGTCTCCTTAGTCCCAGAACCCAACCCGGCTGTCATCTATGAGGGGGCGGGGTTTAATATGAGCTGTGAAGCCAGTAAGGGGACTCACCTCACTTACTCATGGTACCACAACAAGCAAAAAGTGATGTCACCCTCACCTCTTCATCACTTTGCTGGAAACACGCTGACAGTGGATAGGGCTGCTGAAAGGCATGCTGGGAGTTACTTATGTGTGGCTGAAAACATGATGGGGAACAACAGTAGAGCCTCCAGCAGTAGGCCGGTCACCGTCGtggtaaaaaAATACCTGTCAGCTCCCAGGCTGTCATTCACACTTTTCTATAATGGCTCGAGCTACTATGCTAACATCAGCTGTCGGTTGGCCTATGGTAGCCCTCCAGTGACGTTCCAGCTGCTCCTGAATGGGAAGCGTGTTGATGTGCAGCAGGTGGATTTCCTGGAAGCTTGGTTTTCTCAGCCTGTCACTGTAGGACTGGATATGGGTAGAGTACAGTGCATAGCAGAGAACAACATCCAGCAGCTTCTCAGTAACTCAATAGATCTGGAAGTTGTTCCAGTAACAGGGCCTGCACATGTCCAAGTGGAGTACCTCTATAGAGCAGACTCTGCTGTAGCAGCTGCCCTGCTCCAATGCGTGATCACCATGGGGACTTTTCCTATCTTCTCATGGTCCTTCAACGGCTCTACCCTACCCCTGGAGGCCAATTCCCCTACTTTCATCCAACATGAACAGGTCCTAGTTCTCACACACATCAGCCCTGGGAACTCAGGGTATTACAGCTGTCGAGTGAGGGACAGTTTCAACTCTAACTCATCCTGGGTGGAGAGTGAGGAGGTCTTGGTGAAGATGACAGATTTAACGATCTTTCGCACGAGCACTGCCACAACATATGAAGTTGCTGATTTAACAACCTCTTTCAACAGCGCAAGCTCTACCACAACAGATGTAGTTGCTGTACAGTCCTGATCACTGGTCTGTGGTACATTCTCTTAAAGCTTTTGAAGTGACACAGATAGAGGTCACtgctgtggtcttctgctgcttccTGTTTGTGATGATTGTGGGAGGAGCTGGCTGTCTCTTTCAGAACATTAACCCTGAGCGTGAAACAACAGACAACTACCATCATGGACACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209726 lncRNA upstream 160846 6960487 ~ 6961539 (+) True G177166
TU209744 lncRNA upstream 162178 6953643 ~ 6960207 (+) True G177180
TU209692 lncRNA upstream 214633 6904969 ~ 6907752 (+) True G177141
TU209724 lncRNA upstream 235982 6885578 ~ 6886403 (+) True G177165
XR_003403689.2 lncRNA upstream 247338 6863825 ~ 6875047 (+) True LOC113536609
TU209804 lncRNA downstream 23615 7155121 ~ 7155344 (+) True G177233
TU209856 lncRNA downstream 140009 7271515 ~ 7272538 (+) True G177268
TU209862 lncRNA downstream 148057 7279563 ~ 7279767 (+) True G177274
TU209859 lncRNA downstream 162494 7294000 ~ 7344522 (+) True G177271
TU209892 lncRNA downstream 206919 7338425 ~ 7343270 (+) True G177302
XM_026930714.2 mRNA upstream 128 7108323 ~ 7122257 (+) True tmc8
XM_026930300.2 mRNA upstream 46703 7058488 ~ 7075682 (+) True notum1b
XM_034308812.1 mRNA upstream 168930 6951094 ~ 6953455 (+) True LOC117598414
XM_026930539.2 mRNA upstream 181721 6917107 ~ 6940664 (+) True trappc10
XM_034308708.1 mRNA upstream 181721 6917107 ~ 6940664 (+) False trappc10
XM_034308890.1 mRNA downstream 2413 7133919 ~ 7141157 (+) True si:dkey-93h22.7
XM_026930508.2 mRNA downstream 11589 7143095 ~ 7150096 (+) True syngr2b
XM_026930357.2 mRNA downstream 25294 7156800 ~ 7164921 (+) True afmid
XM_026930568.2 mRNA downstream 35082 7166588 ~ 7179763 (+) True cant1b
XM_026930567.2 mRNA downstream 35082 7166588 ~ 7179763 (+) False cant1b
TU208265 other upstream 2461249 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 2825138 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 3464109 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 5043758 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 5062102 2058970 ~ 2060283 (+) True G174536
TU209855 other downstream 136378 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 470720 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 1111916 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 1113446 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_8 other downstream 1116510 8248016 ~ 8248088 (+) True trnar-ucg_8

Expression Profile