RNA id: XM_034308441.1


Basic Information

Item Value
RNA id XM_034308441.1
length 2085
RNA type mRNA
GC content 0.47
exon number 12
gene id zrsr2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21063417 ~ 21070097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCCACAGCAAACGTCATCATTTCGCGCAGCTACCTTCTGTCTGTAAGTGGTTTAATTCGGCGGCTAGCACGATGTGCTAAAATGTTATCAACAGATCCGTGCCAGTATTCGACAAGTGACCAGTTTCCCGTAAAGACTGCAGATGTTTCCTCTGAGAATCAGCATGAAGTTACAGAAATGCAGAAACCTGCTCCACTGAGtgGTAAACAACGACGGGCCTGTCTGAAaagggaaagaaggaaaagaaaacgtCAAGCTCTTGCTAAACTCAGAGAATGTGCTAgtgctggtgctggtgctgaTCAGTTTGAAATTGAGCAAGAccaagatgatgatgaaaatgaggATGAAGAGCAGAGAGAGCAAGCGCGTTTACATCAGGAatggctggagagagagagaatagctCAAGAGGAATTTAGGCTGAAGATAGAGAAAGAAGAGACCGCTCGAAAGAAAAAGGAGGACGAAGAGAGGAGGATCAAGGAGGAATGGGAGGAACAgcagagaaaggaaagagagctgcaggagcagaaacagcaggagaagagagacagagagGAAGCTGTACAGAAACTGTTGGATCAAGCAGAAAGCCAGTTGGAAAATGGAGGTTCTTGGAAAAACCCTGATGCTCCATTGGATTTTGGGACAGAAAAGGACAAGGCAAACTGCCCCTTTTTCATCAAGACTGGAGCTTGCAGATTTGGAGACAGGTGCTCTCGAAAACACGATCACCCATCATCAAGCAGCACTTTGATGGTCCGGGGTATGTTCGTGACATTCGCCATGGAGCAGAGCAGACGTGATGACTATGATACGGACGCAAGTCTCGAGTACAGCGAGGAGGAGATGCGGCAGCAGTTTCTGGACTTCTACGATGACGTTCTTCCAGAATTCAGGAATGCAGGCAAAGTTGTGCAGTTCAAGGTGAGCTGCAACTTTGAACCCCACTTAAGAGGCAatgtttatgtacagtatgaCACTGAGGATCAGTGCAAAGAGGCTTTTATGATGTTTAATGGACGGTGGTATGCAGGGAGGCAACTGCAGTGTGAGTTCTCTCCTGTGACCAAGTGGAAAACGGCAATATGTGgaCTTTTTGACAGGCGTAAGTGTCCAAAGGGGAAGCATTGTAACTTCCTCCATGTGTTTCAAAACCCGGGTAATGAATTCTGGGAGGCGGACCGTGACCTCCATTTGTCCTCTGACCGTGGTGGAGGCCTCAGCGGACGGCACAGGGCACTGTCACAGCGTGGCTATAGCCCTGAACAATCTCGCAACAGACAGAGTGACAGGAGGAGCCGCAGTCGTGAGAGGCAGAGCCACAGACGGAGGCGGAGTCGCAGCAGAGAGAGGCGGAGTCGCAGCAGAGAGAGGCGGAGTCGCAGCAGAAGCAGAGAGAGTCGGAGGGCTCATCATTTTCTGAGAAGGGAAAAAGGTTCCTTAAATGATTGGGGCAGGAGAAGCAGAAGCCCTGAGAGACGCAGATCACGTAGCAGAGGCAGAGAAACAAATTCTCAGAGTGGAAGTCGTCATTTGCATGCAGAATCAAGAACAAGATCTTGTAGGAGATCAGAATCAAACACCTCTGAAGAGCAATTCAAAAATGGCTCCATCAAGAGGAAGAGTAAGAAGAGTGAGAGCAAAAGTCCAAAAACTGGCGAGGCTTCCTCGCCGGATGCAAATACCTCCTTACATCACCACAAACGCTCgaaaaagagcaagaaaaagaaaaagagcaaaaagaagcaaaagagaaagaggagcaAATCCCGCACCGTCAGCTCTTCAGCAGCTTCTGCTGTAGAGTCAGAGGACAATGAAGATCAAGAGACACCAAAAAATGAagataaacaaaacacagaaaaggcTGGAGAGGATGCCGAGATTGATGAGAACCTCGTCTCACTCCAAGATAACAAGGAAATTGAATCAAGCACACCTGCCAGCTTTGCTACTGAAAGTGGGCCTGATTAATGAGCGTATAGGAAAAGACATTGCTGTATTTCCAGTTTTTGGCTGTTTCGGTTTCAACAAAACTCTCTCAGTTttgatatgtaaataaatgtggttAACATtt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219472 lncRNA upstream 3288 21059064 ~ 21060228 (+) True G185436
TU219446 lncRNA upstream 38956 21002828 ~ 21024560 (+) True G185418
TU219404 lncRNA upstream 95615 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 167055 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 355489 20705994 ~ 20708027 (+) True G185206
TU219486 lncRNA downstream 7078 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 8575 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA downstream 8575 21078672 ~ 21084699 (+) False G185439
TU219482 lncRNA downstream 8575 21078672 ~ 21339714 (+) False G185439
TU219491 lncRNA downstream 8575 21078672 ~ 21084699 (+) False G185439
XM_026915666.2 mRNA upstream 13043 21043300 ~ 21050473 (+) False txlng
XM_026915674.2 mRNA upstream 13043 21043461 ~ 21050473 (+) False txlng
XM_034308444.1 mRNA upstream 13043 21044005 ~ 21050473 (+) True txlng
XM_026927592.2 mRNA upstream 26942 21029394 ~ 21036574 (+) False hcn5
XM_034308716.1 mRNA downstream 16820 21086917 ~ 21105876 (+) True npepps
XM_026940939.2 mRNA downstream 38496 21108593 ~ 21114493 (+) True mrpl45
XM_026926035.2 mRNA downstream 61382 21131479 ~ 21141847 (+) True socs7
XM_026926043.2 mRNA downstream 61383 21131480 ~ 21141847 (+) False socs7
XM_026921935.2 mRNA downstream 72974 21143071 ~ 21153622 (+) False sp2
TU218923 other upstream 912622 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1192053 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1229102 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1363242 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1509994 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 119689 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 888791 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2862769 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2864035 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2864538 23934635 ~ 23934706 (+) True trnaq-uug_3