RNA id: XM_026930278.2


Basic Information

Item Value
RNA id XM_026930278.2
length 2405
RNA type mRNA
GC content 0.46
exon number 10
gene id lrrc28
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7659046 ~ 7671661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTCCGACAAACCTCACTTCCTGTAAGAGGACCGGGTGGGCAGAACCTTGCCCTTCTGAGATATGATTGGCTAGTTTTCGGCGGAGTGCCTGTGAGTGTGGATTGCTAGCCAATCGTAATGTAGTAGGCGGGGTTTGTCGGAATACAAGTGGGGAATATAAAACTGGGCAGACATCACAGGGTGTGATACAGCGGAAGTGAAAGAGGGAACAGCCCCCTCTGTGAGCATGGCCTCGGAGCTCCACGACGCCATCTTCATAGCCAAACAGGAGCGCCACAAGAACCTGTTCCTCAACTACAGGAACCTGAACATCTTTCCTGTGGAGCTCTTAAAAGATGAAGGCTTGCAGTTCCTGGAAAGACTCTACATGAAAAGAAACTCACTCACGACACTGCCTGATAATCTAGCACAGAAACTCCCCAACCTGATCGAACTGTATCTCCACTCTAACAACATTGCCTTCATTCCACAAGCTATTGGGAACTTGGCGAGGCTGCAGTCGCTGGATCTGAGTGATAACGCCCTGCAGGTGATCTGCCCCGAGATCGGCCGCCTGCGCTCATTACGCCACTTACGACTGTCCAACAACCAGCTGAAATGCCTCCCACAAGAGCTGGGGGATTTGAAGGAGCTGGAGACTTTGGACGTGTCCATGAATCTGTTAAGGACTCTCCCGGAGCAGCTCCAccagtgtgtgtctctgcagtgtCTGACCGCTGACCGGAACCTCCTGCAGTGCTTCCCTCGTCAGCTGTGTCAGCTACCAGACCTCAACGAGCTCTCCATGGCTGCAAACTGCCTCAGATCACTGCCTCTGGATCTCGGTCGCTCCATGGAGCTGCAGTTCGTCTTTGTGGACAACAATGTTCACCTCAAGGGCCTGCCTTCTTACCTGTATAACAAGGTCATCGGCTGCAACGGgTGTGGCGTTTCTCCACAAGTCTCTGAAGTGACACAGCTGTCCCTGACCATCGGAGATCTGAACGTGCCTCTGCCCTCGGAAGTGAAGGCTACCGGCACTGAGGCTGACCGTGTGCTGACATTAGAGGAGATGGCAATGAGAACACTGCATGTAGCGTACAGCAGGAACAGGAAGGACTCTGCGTTCTTGCCGACGTTCCTGCTGCCCACCAGCCTGTTAGAGCTGTTCCACTGTCCACTGGGTCACTGCCATCGCTGCAGTCAGCCCATGTTCACCATCGTCTATCCCAAACTCTTCCCCCTCAGAGACACTGCACTGGCTGGAGTGCACAGGAGAACGACGGTGAGTTTTGTAGGGTACTGCTGCTCCAGCCAGTGTTTGCAGATGTTTGACCTGCAGGGTTGATATCACTATTTCATCCATCATGGTGCTGTCGTCAGGATGTGCCAGGAGAATGTTGTGATATCTTGCATTGATCTTGAGCTACAGACTAACAGTGGACACCGTGATCTTCCTGATAACATCCGAGGCAgtaaaagttttggcacccatTCAAAGTTTGTACTTATGAGCTCCTTTCAATAGTCAACATTGGCACTTTCTATCAAAATAAGAATAGTTTCATTTTATGAAGTGTTTTTTAACTGGTTCTAGTACCTTTAGTACAAGAGTGACTCTAGTCACTCTTGAGTACCTTTCACCTTCGTCAGATATTCCCCAAACCTATAGAAGGAtgagaaatatttttgaatacaGCCAAAATCCATATTTGATGCAAGTGTCCTGATGattttcagaaatgtgttaTTCAAGTATTTATTCTTAGAAGGACTGATCTCCATTTTGGAGATTTTCTGTGTGAAATTTTTGGACTGTGAATTTTATGACTGTTCTAGACCCAGTGAAGCACTACAGAATGTTCAAAACAGATCATgtacatgctgttaaaggaataCTGAAGAATCAGTTTTACACAGTTTCACCCGTACCCCAGTGTAGATGATCAACCAAGATGTTTGgtgtctgttgtttttttttaagccttgCCCTGGCTAATATTGCTAACAAGTAATTTAAAGGGGAATTGTAGTTCCAATGAATTCTAAGGAAGCAAATAACGGATACCAAAAACCTTGACCGATCATGTATTGGATCGATGGTcgattggatttttttttgctaaaccaCTCCTTTAATGCATCGTGAGGTCCtctaataaatacattatttgtgGCCACAACCACAATCTGCATTCGTATCTGCATCCAAAGCCATTCAGGAGTTTGTATGGCTTGTCATTGATTTTTCCCACTAAATCTTTCTACATGTACATctgactgaaatgaaatgacattCGTCATTATTTATAGACGAAACGCCATGTTTCCATTAATGTCTAGAATGTTTGTATATTGAAGTGTTTTAAACGATACAATATTTATTGAATTCATTAAATGCTTTAGACCATTGTAACATCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210347 lncRNA downstream 107296 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 149858 7508851 ~ 7509188 (-) True G177682
TU210182 lncRNA downstream 179658 7479158 ~ 7479388 (-) True G177562
TU210179 lncRNA downstream 187836 7470974 ~ 7471210 (-) True G177559
TU210170 lncRNA downstream 216651 7441891 ~ 7442395 (-) True G177550
TU210367 lncRNA upstream 4514 7675916 ~ 7676670 (-) False igf1rb
TU210390 lncRNA upstream 36109 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA upstream 57511 7728913 ~ 7750806 (-) True G177733
TU210491 lncRNA upstream 254891 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 599705 8271107 ~ 8275360 (-) True LOC113536653
XM_026930309.2 mRNA downstream 2092 7625496 ~ 7656954 (-) False LOC113536417
XM_034308693.1 mRNA upstream 4719 7676121 ~ 7764430 (-) False igf1rb
XM_026930589.2 mRNA upstream 4719 7676121 ~ 7764401 (-) True igf1rb
XM_026930905.2 mRNA upstream 128263 7799665 ~ 7801552 (-) True mespaa
XM_026930903.2 mRNA upstream 137988 7809390 ~ 7810679 (-) True mespba
XM_034308973.1 mRNA upstream 146834 7818236 ~ 7845027 (-) False sv2ba
XR_004579066.1 other downstream 70231 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 70231 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 70231 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 70231 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 175088 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 570704 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 571329 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 573247 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 575301 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 576288 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile