RNA id: XM_026930282.2


Basic Information

Item Value
RNA id XM_026930282.2
length 4850
RNA type mRNA
GC content 0.48
exon number 6
gene id si:ch211-146m13.3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5379911 ~ 5388579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAACAGTCCAGTAATGAGCACATTCTGAGCATCATATGGCTTAAGACAATATAACATCCTTTTCTTTATATGTCTCTATAACTCCCCCACACAAAAAAGACGGGGGCGTTGGGGAGGGAGCAGGATCACTCGGACATTCTTATCTTTTTTTGAATCACAGTCTTCCAGGGAAGAAGCTTCACCTCTACATCACAGCaggagcacagagagagagagagagggagaaagagagagagagacagaagcagGAGCAACGGGAGAAATGCTGTGCCAGATAGGTCTTGATAGGGAAAGCAGAGCGCCGATGCGAGCCTCTGCCTGGCGGGGCCgtgtggagagagacagagaagtaCACCATCTGCATGCCCATGGGAAGAAGCAGGCGTAATAAAGGCATCCATTACCACAGGCCCGGCACAGACAGCGAGGAGCTTTAACATTGGGATAAGAGCCTGATTAGTTGGGTTGCATCCCTTTTCCCTTTTCCATTTTGCCTTGAAAGATCCTTTTGTCTCCCTGACGAGACTCGAGATACAGGGAGGAAAGCTGCTTTAGCATTTCTGTTTATCACGGTCTTCCTTGCTCGTTTCGTGCTTTCTCTAACATTCTGAGGATTTGCCAAAACCTGTTTCATGCATGTCCACTGGAGGCAGGTTTGACTTTGATGATGGGGGGTCGTACTGTGGAGGGTGGGAGCAGGGCAAGGCTCACGGCCGGGGGGTCTGCACAGGGCCCCAGGGCCAGGGGGAATACGCAGGGGCCTGGAGCCATGGATTTGAGGTTCTTGGAGTGTATACCTGGCCCAGTGGGAACAGTTATAAAGGAACCTGGGCGCAGGGGAAGAGGCATGGTATCGGTGTGGAGACCAAAGGCAAGTGGGAATACAAGGGGGAGTGGACGCAAGGATTCAAGGGCCGCTATGGGAGGCTGGAAAGCATCGGCAGTGGGGCTCGTTATGAAGGGACCTGGAGTAATGGCTTACAGGATGGTTATGGATCTGAGACATACTCTGATGGAGGTACCTACCAGGGACAGTGGTTGAGTGGTATGCGACATGGCTATGGGGTGCGTCAGAGTGTGCCTTATGGCATGGCCGCTGTCATCTTCTCCCCTCTGCGCACCTCCATAAACTCGCTTCGCTCTGAACACAGCGAGGGAGCTCCAACACCTGATGATGGCTCTGGTGTGAGTGGGGTGGCCGGCAGCCCGGTGGGACGTGGAGGCTTTGTGCTTTGTGCCCAAAGTGATGCTGACCGGCAACGGAAGAGGAAAGGGCGTTTCCGGCAGTCTATCCTGAGTGGCCTGAAATTACGCCGTTCTGAGTCCAAGAGCTCCCTGGCCAGCCAGCTAAGCAAACAAAGCTCCTTCTGCAGTGAGGCAGGCATGAGCACGGTCAGCTCAGCTGCATCAGACATCAACTCTAATGTCAGCCTTGGGGATGGGGAGACAGGAGCCAGTGTAGATGCAACAGTCACTGAGACATACATGGGGGAATGGAGGAATGACATGCGAACAGGTTGGGGGATCAGTCATCGCTCGGATGGACTGCGCTACGAGGGTGAGTGGTTTGGGAACAAGCGGCATGGTTATGGCTGCACCACCTTCCCTGATGGAACAAAAGAGGAAGGCAAATACAAGCAGAATGTTCTGGTGAGTGGCAAGAGGAAGAACATAATACCACTGCGCACCAGCAAAATTCGGGAGAAAGTGGACCGTGCCGTTGAAGCTGCTGAGAAGGCTGCAGAAATTGCTAAACAGAAGGCAGAGATTGCATTGTCAAGAACGAGCCATGCCCGAGGAAAAGCTGAGGCAGCTGAGGGAGTTGCACAGAGGGCCCTGGAGGAGTGTCGTCTGGCCCGGATTATTGCCAAAGAACTCTCCCCTTCCTTCCATCATTATGGAAATGGACTGGAATGCCAGAGACCAAAGCGTCAAGACAGAAAAGACAAAGAGGTGGAAGTGATCTCAACTGGGACGGACAGCCCAGAGCTCTGCACACCAGACACTACTCCTCCAGCCCAGACCCCAGACCTGAGTCCTGTCCTGAGCAACCCTCCATCACCTCCATGTACCCCACCATCTCACCGTGCCAGGAGCACCTGCTTCATGCGTCAGAGTGCTGTGGACGAACAGGGAGGGGCAGAGATTCAGGTTCTGGTTGAAGGAAGAGGCATGGACAATGGAAGAGGTGGAGCACACAGTTGGACTGCAGACATGTATCCCAACCGAAGGGGAAGCAAAGGAGACAGTAGCCGCTCTACCACACCATCCCTACTGGAGGAGGACATAGGCCACATCAATGGACATGAGCAAAACTCCTCAACACATCACTCATGGGAGAATGGCTCTTCCAATCACAAGCCCATTGAGCACATCTCCTCAGATAAGGGATGGGATCATATGCCATCCAATCAAAAGTCCTGGAAGCATACATCCTCGAATCACAAGTCCAGGGAATACACAATCTCCAAACACAGAGAATGGGAGCATGTTCCATCAAGTCACAACTCTATGGACCACAACTCTTCCAAGATCAAACCGCAAGTGCACACATACTCCAATCACAAGGCCTCGGGTCATAATTTGTCCAATCACAAAATTCATGAGCATTCTTCCTCCAATCACAAGCCAAAGGAGCATATCTCCACACATGCAAAACCACAAGACCGCGCATCCTCCCACTACAACCCTAGAGAGCATGTATCTTCCTATCGCAAATCACACGAGCATGTCCACTCCAATCACAAACCAAGCCAGACCTTTACCAATCATACAGCTGGTGAATCCAGTCTGAATGACTACCAGCCACCAGAACAAGGAGCCAAGAGCTCCAGTCTGGGATGGACTGTTGAGAACTCTTCCCAGTGGATCCCCTGCCACTCACAGCTGCCTGAGAAAGACAAGGAAAAGCTGGATGACTACCGGGTGGAAATGAGGTTCCAGCCCCTTGACTCCGTTTCGCAGCAGCACTTTGGCTCAGGCATGGAATGTCCAAGTCTCCAAGGGCACAATTCGCAGACACTACGTCAGCGGAATCATGAAGGAAAAGAGTGGAGTCTCGCAGCCAGGGAAGGATCCATGGACTCTGTGCAGATGCTGGACAGCCTGAATGTCGGGGTGGATTTGGAGGAATGGCCGTTGCACAGGGATGTCACCCTTTCTCCCCCTTTAACATCCTCTCCAATCACTCTAGAAAATGACAGAGAGCATCTGAACCTGGTCAAAACAAACTCAGGCTCCAGCTCTGTCCTGGTGGTCATGGTGATTTTACTCAACATTGGTGTagccattttattcattaatttctttatttaaacacaatggCCTAGAGAATGTTAATAACAGCACTTACTATTATGAAAAAGTAAGATATGCACATGCTGCACACTTAGCATCACTTCTCTATGTAAGGAACCCAGAATTTACATTAGTCAAGCCCATGTACACTGGAAAACACCATGTAAATTGTAAGTTTAGTTTGTGATTCCATTAATGATATATTTCCATTATTATCCATTAGGTATCtttgcttacttttttttccttctccataaTAAAGGCCCAGTAACAGTATTCTTTAGGAATAAAAGTATTGCACATATTTAGGATTTGAAGATACAATATTGCCTGATATAATTTGTCATGTCTTTCAGCTCGTTAAcagagttatttattttccttttgaGTGCACATCtggcctgatttttttttctgaacattatGATTGTATAGCTTAGTGAGATGGTCTTGTGGTCTTATGTACAAAGATGTTCTAGCGCATGTGAGGTGGTCAAGTGCACATGGCACTGATATGTAACTAGTCAGTCCAAGACTACACACCCCCTTGAATATCCCAGGGTACTGCCCTATAGGACCGCTGCAACCACTCATCAGTTCATCCATCGAAAATCTCGCATATCCATACCCACACTCTGTAAGTCAGACGTAAAGGCTATCTTAAAGGGCTTCATCATGACACGTTTTCATCCGAATCCAAATTCACAAGTGTGTAGTGAATGGGGTAATCCTGCGAcgttcttccttccttctctaaGACGAACCCCTTTAGCACCATCACTGAATGTCAGCACAATTCAGTCCATTGCTTCGTTTGTTTTACTTCACACCAGACGACTACATACACAACTATGCCAAACATGCATCGTACTTCCTGTATGACCTGAACCATAACAGAGGTACATCGATGGTTGAGTATTCTGGCTCATGCTTTGTAAAGTTTGAGACTGTTACCTTTTGACCACTGCTttcaatatacatatatataaatatatattctatattattgACGAGTTAGTATCTTTTAACTGTTTGCAAGATATCATTGATAATGCTGAGtgcctttttttaattgaagaaaaaaaaatcatcccaGCAAGCAGGCTTTGTACAAAGTGACGACATATACAGAAGTCGCGTAAGGAGGCATGGaaccatctgtctctctttctctctctactcaCCTTTGAACTGAATGGGTTGGCTGTAGAACACTGAGCCCGTGGAAATTTTTACAGCATGTTTGTTGGCCTGTATTCTTCTGCTGTTATTCTGTGTGactttctgcctgtctctctgtccagcAACTTTAGGTGACAATAGGGACTGAAAGCAGTGTAAAAAATGCCAGCTTGTTTCTCAGTGGGACCTGACTGAAATCATCTCaattaatgaatgataaaactgctactgtatattttatactaCTCATCCAGTGACATCATCATGTTGTGGAATCATTGCATGCCCAAGCATGCCCTTTCTTACGCAATGATTTATGAGATGTTTCCAAGTTATGtggaaaaattaataaaatgtttgagGTTATGA

Function

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208361 lncRNA upstream 419385 4912078 ~ 4960526 (+) False G176056
TU208360 lncRNA upstream 457857 4916775 ~ 4922054 (+) False G176056
TU208359 lncRNA upstream 457857 4919768 ~ 4922054 (+) True G176056
TU208344 lncRNA upstream 486554 4893142 ~ 4893357 (+) True G176041
TU208292 lncRNA upstream 518968 4787742 ~ 4860943 (+) True G175999
TU208784 lncRNA downstream 32308 5420887 ~ 5424095 (+) True G176384
TU208802 lncRNA downstream 83233 5471812 ~ 5568100 (+) True G176401
TU208808 lncRNA downstream 117191 5505770 ~ 5509854 (+) True G176406
TU208838 lncRNA downstream 214077 5602656 ~ 5614328 (+) True G176430
TU208878 lncRNA downstream 288627 5677206 ~ 5690860 (+) True G176469
XM_026930350.2 mRNA upstream 2020 5366861 ~ 5377891 (+) True LOC113536448
XM_026930920.2 mRNA upstream 24621 5314467 ~ 5355290 (+) True drd4b
XM_034308471.1 mRNA upstream 24621 5342802 ~ 5355290 (+) False drd4b
XM_026930743.2 mRNA upstream 69752 5308021 ~ 5310159 (+) True rxfp3.3a2
XM_026930338.2 mRNA upstream 344506 5033239 ~ 5035405 (+) True senp8
XM_026930289.2 mRNA downstream 5438 5394017 ~ 5398901 (+) True LOC113536403
XM_026930821.2 mRNA downstream 10545 5399124 ~ 5407447 (+) True csnk2a2a
XM_026930286.2 mRNA downstream 100436 5489015 ~ 5496453 (+) True sult5a1
XM_026930917.2 mRNA downstream 133669 5522248 ~ 5524430 (+) True LOC113536777
XM_034308888.1 mRNA downstream 160852 5549431 ~ 5562727 (+) True LOC117598428
TU208265 other upstream 718775 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1082664 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1721635 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3301284 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3319628 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1733806 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1879305 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2213647 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2854843 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2856373 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile