RNA id: XM_026930286.2


Basic Information

Item Value
RNA id XM_026930286.2
length 2179
RNA type mRNA
GC content 0.41
exon number 6
gene id sult5a1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5489015 ~ 5496453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCCACTCAGGAAAGTATTTAAAGCTGCCTCGACTTCctctcagagacacacacacatgctgacagACACGTATTATGACTCAGAGAGAGATGGCTCGGCTGGATGTTACAGAGACTTTTCAGGGCATCATATTTCCTGGACACTTGCATACTCAGGAATCCCTTCGCTATGCTACCAACTTCAAATTTCAGGATACAGACACTTTGATTGTCACCTACCCCAAATCAGGGACGACATGGATGCAAGAAGTTGTCACAATGGTATCATGCAGAGGAGATACAGTAAAATCTCAAACACAGCCTAACTGGGCACGAGCTCCATGGATTGAGCAGTACTACTGCCCAGATGTTCTGAAGGCTTCACAAGGACCTCGGCTTCTCACCACTCATCTGCCATACGAACTATTGGCTTCTGCACTCCAAGGCTCCAAGGCAAAGGTCATATATGTGGCAAGAAATCCTAAAGATGTGGTAGTATCTTATTACTACTTCCATAAAATGGCCAAGTTCCTAAAAGACCCAGGCACATTCTCCGAGTTTCTGAGTGACTTTCTGGAAGGAACAGTGTACTATGGGTCTTGGTTTGATCATGTGAAAGGATGGACCAGCAATGCAAGAAACATTGACAACTTTCTGTATATCACATATGAAGAGATGTGGGAGGACCTGCGTGGCTCTCTGATGAAAGTGAGCCGATTCCTGCAGTGTTCCCTGCTGGAGGATGAGTTAACAAGCGCCCAGAAGACCTGTGGCTTCAACACCATGAGCCAGAACTGCATGGTGAACTACACCTTGATTCCTCAGGAAATCATGGACCACAGCAAGGGCAAGTTCATGAGGAAAGgTCAGATTGGAGACTGGGTCAACACTTTCTCCCAGGAGCAAAGTCACAACTTTGATGAAGTGTATGCCTCCAAGATGGCGGACTCCATGCTGAAGTTTGTGTGGGAGACAAAAAAATCCAGCATAGACACAGAGATCTTACCTCTCTCCACCGTGTGAAATAGCACCTTCTTCTTATGGATCCtactattattaatatcttATCGTGCTTTCCCATAAATCATTCCACATCTTATTGCCTTCACTGTTATTTGGTTTTGTACAGTTATCAGGAATGTCGTGAAGAAGTACAACAACCACTTTGTactttggatatttttttttaattataacttGCACCCAGgactaagtaaaatatacagtgtattttgCTATTAAATATGTTCAAACTTGGGTGGCACGGTGGTACAGTGGgtaatttttttctgcttcacaTCTCCAGGGTCCTTGgtctgatcctgagcttgggttactctctgtgaggagtttcacatgtgtacatgtgggtttcctctgggttctctgccGGTTTCCTTCCAGTTCCCAAAATCATGCCAGCAGGTGGATTGGTTacactaaattgtccctaggcatgaacgagtgtgtgaatgttccATTCAGGCTGTATTCAcgtacccagtgttcccaggatcaACCACTACCctaaaaaaggataaaacagtGACTGAATGAATATTCAAACTTTTCTTCCAGCATGTTTCTGTGGCCTTTGCAATAGCAACGGTGCTGCTTTTGCAGCCATAAATCTTCTTTTAATGTTACAGACTTATTGTTTCTACAGCAAACTAAGCTGACTGACTCTTCTCTACGTATCATGTGTATCTTTTCTAAATGAAAAGAGACACAGAAGAGAAAAGATCAAATGTGTAGCAAGATTTATATTCGTGTTTGTATAAAGCAAGGATTTTTCCAATGAAAATCCTTGTCATGTGGATGTAGAAGACTTCTATCTAGAAATAATCTAAAGGAGGCAAACACATCCTTGGGAAAAAAAGGATGCATTTCTCTTTACAACTCTttctacacacagcacacacagcatctCCACATTATCTTCCCCCAACAACTGAATGCAGATGACTCTTTTATCCAATATCTTGAGGGTTGTGTCTTCTTTCACTACACGAGCTCCAAAGTGTAACTGTTGATACAACGTGTAGTTCCCCAGACTTTAGGTTTGACCTGTTCCATGATTATATATGACATTCTGTTTTGGTCCTTGTCATTTTTCATACGTGTTtctatttatgtgtatatttgtaccttgggtgtgttttttctttgaaatacaaaaaaaaaataaataaataaagt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050294 steroid sulfotransferase activity molecular_function

KEGG:

id description
K01015 SULT2B; alcohol sulfotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208784 lncRNA upstream 64920 5420887 ~ 5424095 (+) True G176384
TU208361 lncRNA upstream 528489 4912078 ~ 4960526 (+) False G176056
TU208360 lncRNA upstream 566961 4916775 ~ 4922054 (+) False G176056
TU208359 lncRNA upstream 566961 4919768 ~ 4922054 (+) True G176056
TU208344 lncRNA upstream 595658 4893142 ~ 4893357 (+) True G176041
TU208808 lncRNA downstream 9317 5505770 ~ 5509854 (+) True G176406
TU208838 lncRNA downstream 106203 5602656 ~ 5614328 (+) True G176430
TU208878 lncRNA downstream 180753 5677206 ~ 5690860 (+) True G176469
TU209042 lncRNA downstream 318142 5814595 ~ 5815106 (+) True G176596
TU209054 lncRNA downstream 359072 5855525 ~ 5857242 (+) True G176608
XM_026930821.2 mRNA upstream 81568 5399124 ~ 5407447 (+) True csnk2a2a
XM_026930289.2 mRNA upstream 90114 5394017 ~ 5398901 (+) True LOC113536403
XM_026930282.2 mRNA upstream 100436 5379911 ~ 5388579 (+) True si:ch211-146m13.3
XM_026930350.2 mRNA upstream 111124 5366861 ~ 5377891 (+) True LOC113536448
XM_026930920.2 mRNA upstream 133725 5314467 ~ 5355290 (+) True drd4b
XM_026930917.2 mRNA downstream 25795 5522248 ~ 5524430 (+) True LOC113536777
XM_034308888.1 mRNA downstream 52978 5549431 ~ 5562727 (+) True LOC117598428
XM_026930579.2 mRNA downstream 211936 5708389 ~ 5710341 (+) True gemin6
XM_026930675.2 mRNA downstream 267354 5763807 ~ 5772916 (+) False rfc4
XM_026930676.2 mRNA downstream 267375 5763828 ~ 5772916 (+) True rfc4
TU208265 other upstream 827879 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1191768 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1830739 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3410388 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3428732 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1625932 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1771431 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2105773 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2746969 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2748499 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile