RNA id: XM_026930287.2


Basic Information

Item Value
RNA id XM_026930287.2
length 2299
RNA type mRNA
GC content 0.43
exon number 11
gene id alpi.2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11384806 ~ 11392946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttccttcatcCTCTAATCCACACCATGGCTCTCCGACACACGCTTACATCTggaatattaattttatttttgattaatgtctgtttttctgACATCCCAGtggaagAAGAGGATCCAAGGTTTTGGAACATAAAGGGGAAGGAAGCTCTCATCTCAGCTTTATCTCTGAAACCAAATGTTCATCGGGCCAAAAATCTCATCCTCTTCCTCGGAGACGgtatgggAGTTTCGACAGTGACGGCTGCTCGGATTCTGAAAGGGCAGCTCAATGGTAAAAATGGAGAGGAGACTCTGTTAACCATGGACATGTTCCCTCACCTGGCTTTATCCAAGACCTATAATGTGGATCAGCAGATGCCGGACAGTGCTGGTACGGCCACAGCGTATCTGTGTGGTGTGAAAGCAAATTACGGAACTCTGGGTCTCAGTGCTGCGGCTCGGCTAGGTCAGTGTAGCACCGCCAAGGGCAACGAGGTCAAATCAGTCCTCCACCGTGCCAGAGCGGCAGGGAAGTCTGTGGGTGTCGTGACCACCACGCGAGTTCAGCATGCATCTCCAGGGGCAAATTACGCCCATATTCCTGATAGAGACTGGTACAGTGATGCTGAGCTGCCTGCTAGTGCAGTGAGCGAAGGCTGCAAAGACATCTCCTACCAACTCGTCCACAACACCGACATTAATGTGATATTAGGTGGAGGGAGACAGTACATGCTGCCTATAGGGACTGCAGATCCTGAATATCCTTCAACCACCGGTGTCAGAAAGGACAAAACCAACCTGATCGACGAGTGGCTTAAAAACAAAACGaaCGCCTTTTATGTGTGGAATAAAGCTCAGCTCAACGCTGTGGATgagaaaaacacagattatTTAATAGGTCTTTTTGAGCCAAAGGACACCAGGTATGAGCTGGATAGGAATCCAGAAACAGATCCGTCACTCACAGAGATGATGGAAAAAGCCATCAAGATCCTCAGCAAGAACCCCAATGGATTTTACCTCTTTGTGGAAGGTGGTAGAATAGATCATGGACACCATGCAAGTGAAGCTAAACATGCGCTGTATGAAGCGGTGGAGTTTGACCGCGCCATCGCTCGAGCAGCCGAGCTGACCAGTGAACTGGACACTATGACTGTGGTCACCGCTGATCATTCACACGTGTTCTCTTTTGGTGGAAACTCACCCAGGGGCAATCCAGTACTGGGACTTTCTACTAAAATTGGCACTGATAAGAAACCCTTCACCACCACTCTGTATGGGAACGGACCAGGATATATCGCCAATGGAACACGGCCAGATCTTAACTACACTATTACAAgCAGAACCAATTATGTCCAGCAGTCTGCAGTTCCTCTCTCATCTGAAACTCACGGTTCTGAAGACGTGGCCATTTTTGCAAAAGGCCCGATGTCTCATCTTTTCCACGGTGTCCAGGAACAGAGCTACATCGCCCATGCTATGGCCTACGCAGCCTGCATCGAGCCCTACACCGACTGTCACTTACAGCTGGATTCCGAAACAGACCCAAATCATGCCGTTTCCATCCGGCTCAGTGTCTGCGCTATACTACTCAGTCTCTTCACTTCTCTCATCCATTTCCTCTAAAGGAGCTGCACTTTCACCCTGAACACTTATTTCCCCTACAGATTGTGCAACATGCAGTAATATTGTGGATTTTTGTGTTAAACCAGTGTCCTGTGCacatgatataaatataataatgttaataatgtaataaatgtagatGTAATTAGTGCAATGTTATTAACTATCAATAACAGACCCTTTACAGATTAAGTATAACAGAGATATCAGTGgtatctttattattatcacattttactgtattttatagaAAGTCTATTAAGTCTTTATAGAAAGATAGTCTGGCACAGCCATAATTTTCTGAGATGGATGTAAACAGCTCCCAGACCATGTACACCATCCATAATTTCATCTATGgttattaattatttcagttATATTTTGAGATGTCAGTATTCTGCGCAGTAATTACCCATTTCCTgcataaagtatttaaaaacatatctaGGTTctctagatttatttattacttaaatCTGCATGTAATGTGAATGACTTTTCTAAACATCACTTATGTTAAACAGTAAATGGATGGTCATGTGTAATAAATACCATGAGTAACAAAAGGATAAAACATTATACATGAAATTAATATGGCACTATTTATGATGTACAAAATGCACTGTTTAGAACTGTCACATGACTCTCACTTCTGGGGTtatcatcaataaaaaaaaaagtttaaaaatcaaA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212604 lncRNA upstream 189119 11194836 ~ 11195687 (+) True G179696
TU212593 lncRNA upstream 221427 11163021 ~ 11163379 (+) True G179685
TU212553 lncRNA upstream 230043 11152149 ~ 11154763 (+) True G179648
TU212552 lncRNA upstream 231850 11152018 ~ 11152956 (+) True G179647
TU212525 lncRNA upstream 314989 11069589 ~ 11069817 (+) True G179628
TU212674 lncRNA downstream 7978 11400924 ~ 11401434 (+) True G179754
TU212671 lncRNA downstream 11413 11404359 ~ 11407414 (+) True G179753
TU212682 lncRNA downstream 35667 11428613 ~ 11430897 (+) True G179758
TU212705 lncRNA downstream 78400 11471346 ~ 11473207 (+) True G179773
TU212710 lncRNA downstream 80622 11473568 ~ 11475147 (+) True G179775
XM_034308527.1 mRNA upstream 4811 11360964 ~ 11379995 (+) True alpi.1
XM_026930852.2 mRNA upstream 202952 11176097 ~ 11181854 (+) True b3gnt7
XM_034308868.1 mRNA upstream 224580 11113644 ~ 11160226 (+) False LOC113536667
XM_026930764.2 mRNA upstream 224580 11113645 ~ 11160226 (+) True LOC113536667
XM_026930765.2 mRNA upstream 224580 11113645 ~ 11160226 (+) False LOC113536667
XM_026930646.2 mRNA downstream 2261 11395207 ~ 11402964 (+) False ppp1r2
XM_026930645.2 mRNA downstream 2262 11395208 ~ 11402963 (+) True ppp1r2
XM_034308807.1 mRNA downstream 16122 11409068 ~ 11419817 (+) True ncl
XM_026930520.2 mRNA downstream 54007 11446953 ~ 11457408 (+) True htr2b
XM_026930521.2 mRNA downstream 54007 11446953 ~ 11457408 (+) False htr2b
TU212545 other upstream 223209 11160386 ~ 11161597 (+) True G179643
TU212547 other upstream 223589 11160386 ~ 11161217 (+) False G179643
TU212546 other upstream 223681 11160346 ~ 11161125 (+) False G179643
TU212529 other upstream 285995 11096153 ~ 11098811 (+) True G179632
TU210703 other upstream 3114057 8253421 ~ 8270749 (+) True LOC113536578
XR_003403700.1 other downstream 19114 11412060 ~ 11412127 (+) True LOC113536790
XR_004579127.1 other downstream 19628 11412574 ~ 11412640 (+) True LOC117598448
XR_003403710.1 other downstream 25168 11418114 ~ 11418243 (+) True LOC113536800
TU212683 other downstream 35667 11428613 ~ 11429339 (+) False G179758
TU213106 other downstream 662012 12054958 ~ 12055749 (+) True G180121

Expression Profile