RNA id: XM_026930291.2


Basic Information

Item Value
RNA id XM_026930291.2
length 3748
RNA type mRNA
GC content 0.44
exon number 21
gene id si:ch211-106j24.1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7781661 ~ 7794628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGCTTATCCCAGACAGcggaggtagagagagagagagagagagagagagagagggaaagaatgTGTGTTTCTAATTAGCTACATCAGtcttcacttctctcttttgCGCACGCTACATGGACACTTGATATACAGCTTTGTAACAGATGACGCTTTTCCTCCAGCTGTCATGTTAGAATCTCGTTGTTAGTGTAAAGAACAGGAGATCAGATAAACCAACCATGGGAAAAGGCTACTACATCAGTAAACAACTGGCCATAACAGCTGTCCTGCTTGCTGCTGTAGCTGTAATCAccataattgcactatctatAGTTTACTCTAAAGAAAAGGCCAAAAATGAACTCATGCTCAACAATGGGACAACATCACCTGCATCTCCCACTTCACCACCATCCAACGAACCCTGGGACAAATACAGACTTCCTGACACCTTATCTCCTCAATATTACAATGTCACGCTGTGGCCTCGGCTCACCGTGGACAGTCAGGGCATGTACATTTTCACTGGTGAATCTGGAGTGGCTTTTACATgtgtcagagagacagatttgATCCTGATTCATTGCCACAAGCTGAACTTGACGCTTTTCGAGGGGCGGCATGCGAAGCTGCTGGGAATGCATAACACTGAGGCTCCGGCCATTAGAAAAACCTGGTTCCAAGAGGAAACCCAGTACTTAGTGATCCAGCTGGAGGGGACATTAAAGCCAGAAAAAGTCTACTGGCTTTATACAGAGTTCAGAGGTGAGCTGGCTGACGATCTGGAAGGCTTCTACAGGAGTGAGTACGAGGAGAACGGTGTCAAAAAGGTGCTCGCCATCACTCAAATGCAGGCCACGTCTGCTAGAAAAGCTTTTCCCTGCTTTGATGAGCCAGCCATGAAGGCCATATTTCACATCACTCTCATTCATGAGCCAGGAACTGTTGCACTATCAAACAGTCAAGATATAGGTTCAGAAAGCCTTAAAATGACTGGGCATGATGTTATTAGGACTAGATTTGAACCCACAAAGAGGATGTCTACATATCTTGTTGCTTTCATTGTCTGTGAATTTACATACACCAGCAAACAAAAAGATAACAAGGATGTGATGGTTCGTATATGGGCAAGGAAAAACGCCATTGAAGAAGGCCAAGGAGACTACGCCCTCAACATCACACAGCCAATACTAAAGTTTTTTGAGAAGTATTACAATGCTTCCTATCCTCTCTCTAAGTCAGACCAGATTGCACTGCCTGATTTCAATGCTGGAGCCATGGAGAACTGGGGACTCGTCACTTACAGAGAGACAGCACTTCTATTCGATCCCCAAACCTCAGCCAATGGCAACAAACAGAGGATTGCAACTGTGGTGGCTCATGAGCTCGCTCATATGTGGTTTGGAAATCTTGTGACACTAAAATGGTGGAATGATCTGTGGCTGAATGAAGGTTTTGCATCATACGTAGAGTACCTTGGTGCAGACTATGCAGAGCCTACTTGGAACATGAAAGACCAGATCATACTGTATGATATTTACCGTGCGTTTACTGTGGACAGCCTGGTGTCCTCCCACCCTCTGTCCTGCAAAGAGGAGGAGGTCAATACACCAGCAGAAATCAGCCAAATGTTCAACACCATCTCTTACAGCAAGGGGGCTGCggtgctcaggatgctctctcaGTTCCTCACTGAGGCTGTCTTTGCCAAAGGACTTAGTACATATCTAAATCAGTTTGCTTTTGGGAGCTCTACATATTCTGACCTTTGGGATCATCTTCAGAATgcagttgataaAACTCCGCATCTGAAATTGCCGCACAGAGTCCATGACATCATGAACCGTTGGATTCTTCAAATGGGTTTCCCAGTCATCACCATTGACACCCAAACTGGGAATGTGAGCCAGAGGCACTTTCTCCTGGAGCCAAACTCAGTGGTGGAGCGATCATCTGAATTCAATTATGAGTGGTTTATTCCAATCAAATGGATGAAGAGTGGTGTAGAACAGGAGCAACTCTGGCTTCTTCAAAAATCAGCTATGCATAAACCACTTAAAGCCAGAAAAGAGGACTGGGTTTTGGCAAATCTAAATGTTTCAGGGTATTACAGAGTCAATTATGATATTGAGAACTGGAAACGACTACTTGATCAGCTGACAACCAACCACCAgAAAATCCCAGTCATTAATAGAGCACAGATTCTGGATGATGCCTTTACTCTAGCAAGGGCATCTATCATAAATGTAACACTTGCTCTAAGAACGACTAAATATCTGTCAATGGAGAGAGAGTACATTCCGTGGGAAGCAGCTCTCAGAAGCCTCAGCTCATTATTTGAAGTGTTTGATCGCAATGAGGTTTACGGACCGATGCAGaCCTACTTGCGAAAACAAGTCAAGCCTCTGTTTGATCATTTTACTTCTGTAACTGCAAATTGGACGACGGTGCCTGCAGGCCACACTGATCAATTCACACAGATCATCGCACTGTCACTTGCGTGCAGCACAAGAGTGCAGGAATGCAGGGATCTCACCAAGGGCTGGTTTAGACAGTGGATGCAGGATCCTGAACACAATAGGATTCACCCCAACCTGAGGTCGACGGTGTACTGCAATGCCATCGCTGCAGGAGGAGTGGAGGAATGGGACTTTTGTTGGAAGATGTTTAAGAAGGCCACAGTAGCAGCTGAGGCAGTCAAACTGAGGTCAGCTTTATCCTGCACAAAACAGCCATGGCTGCTTAACAGgtTCCTTGAATACAGTCTGGATCCTGAAAAGATTCGCAAACAGGACGCGACCTCTGTGATAGGATCAATTGCCAGCAATGTGGTCGGCCAGCCTCTGGCATGGGACTTTGTCAGAGCGCGATGGGAGTACCTTTTTAAAGTGTACGGAACAGGATCATTCAGCTTCTCCAGGTTAATAAGTGACGTCACTGCCAGATTCTGCACACCATTCGAGCTACATCAGTTAAAACAGTTCCAAAAGGACAACGCGGACATAGGCTTTGGCTCGGCCTCACAGGCTCTGCAGCAGGCTATTGAGAAGACAACAGCCAGGATAAAATGGCTGGCGGAGAACAAGGAGCAAGTTCTGAAGTGGTTCATCTCTGAGACAGCGTGAACTGCACAGCACTAAACAACCTCGACAGCCTTACAAACTCCATTCACAACATTTACAGGAGCGGAATCCATGGACCGTCACATTGGCATGAACATCCAGGCATATCAGCATATTCACAGCAATTCATAATGGATTTGAATTGTATTTCCATTATTAAGGGTGGTTGttataaatgggctagcagcCCCCAttctttcaaaaataaagaCATCAGTATAAGCTTTTTTcccatccacatcagattatatGCTGTTaacccagtagagcattacaAACTCGAAATgctaaaaaaaccaaacaaaaactaaaatcactaatgcagctgcctatctgcctttaagtaagtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtaaaagtttgtACCACGTCATTCTTATTATTGCCATCGATTAGATCtggtgatataatgcattactCCTTCCTAATAATTTCATCGCCAAGTTAGACCAGCCAGTACTGTCTTTCACAAACACTGGACTCTCTTAAAATATAACAAttctttgcattttaaattgcAAAAATGGTTAAATGAAGCTCCTACAAGCCAGTAAAAATGACTGCTATTTTTGAATAAACATATTCAATCAGA

Function

GO: NA

KEGG:

id description
K11140 ANPEP, CD13; aminopeptidase N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210272 lncRNA upstream 104962 7675865 ~ 7676699 (+) True G177628
TU210274 lncRNA upstream 107191 7673516 ~ 7674470 (+) True G177630
TU210222 lncRNA upstream 233830 7547366 ~ 7547831 (+) True G177594
TU210207 lncRNA upstream 264770 7514816 ~ 7516891 (+) True G177580
TU210139 lncRNA upstream 322904 7458538 ~ 7458757 (+) True G177520
TU210419 lncRNA downstream 21435 7816063 ~ 7816610 (+) True G177751
TU210641 lncRNA downstream 332954 8127582 ~ 8127971 (+) True G177955
TU210693 lncRNA downstream 419350 8213978 ~ 8214220 (+) True G178001
TU210698 lncRNA downstream 448727 8243355 ~ 8243648 (+) True trnar-ucg_6
XR_003403688.2 lncRNA downstream 458799 8253427 ~ 8270750 (+) False LOC113536578
XM_026930639.2 mRNA upstream 220166 7552973 ~ 7561495 (+) True gpr137bb
XM_026930574.2 mRNA upstream 267872 7501078 ~ 7513789 (+) True tbce
XM_026930576.2 mRNA upstream 289418 7484243 ~ 7492243 (+) True tomm20b
XM_026930387.2 mRNA upstream 419731 7356919 ~ 7361930 (+) True map1lc3c
XM_026930801.2 mRNA upstream 492144 7282097 ~ 7289517 (+) True opn6a
XM_026930745.2 mRNA downstream 50045 7844673 ~ 7925739 (+) True LOC113536658
XM_026930744.2 mRNA downstream 53858 7848486 ~ 7925739 (+) False LOC113536658
XM_026930748.2 mRNA downstream 53858 7848486 ~ 7925739 (+) False LOC113536658
XM_026930749.2 mRNA downstream 53858 7848486 ~ 7925739 (+) False LOC113536658
XM_026930750.2 mRNA downstream 53858 7848486 ~ 7925739 (+) False LOC113536658
trnae-cuc_24 other upstream 179364 7602226 ~ 7602297 (+) True trnae-cuc_24
TU209855 other upstream 510341 7267884 ~ 7271320 (+) False rpl37a
XR_003403680.2 other upstream 650155 7122385 ~ 7131506 (+) False LOC113536390
TU208265 other upstream 3120525 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 3484414 4281244 ~ 4297247 (+) False nadsyn1
trnar-ucg_6 other downstream 448794 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 450324 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_8 other downstream 453388 8248016 ~ 8248088 (+) True trnar-ucg_8
TU210703 other downstream 458793 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other downstream 461239 8255867 ~ 8270749 (+) False LOC113536578

Expression Profile