RNA id: XM_034308408.1


Basic Information

Item Value
RNA id XM_034308408.1
length 1611
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113536414
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6085672 ~ 6094778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCCCGTTGCCTAGCAACCCAAAATAATAAAGGCTACTCGAAAGTAAGGGACCAAGTGCACTCGTTAAACAGCAGTAGTAAGTGTAAAGTAATAAACATGTATCAGCGCGCGGAGATATACCTGCCCCGAAAGAAGAAGGTTCCAGAAGCCTTCCGCTCAAACACCTACAggatatttgatgaaaaagtcCCCGAACGATTAAATCCAGATGAGGCGTACAAGGACCACAAATATGCATCCCGAGATCCAGAAGTGACAGAGATGCTAAAGACACACAATATCCCACAGCCTTACAATGTCAAGTTCATCAGGACCAATGTGAGGTTCCTCAACGAGCCCATTGTTCATATGGAAACTGAGAACACAAAGGACGAACAGTGTAAATGGTGGCTGAATACACCGGACAAGAAAGTGCCTAGAAAAACAACATACAGTAAGGAGAGCACTCAGAGACGTGACTACCAACCGATCACACACATTCCAGTGACCAGGGTTCAAGAGGAGAGAACTAAGCTTCCAGCTACAGGAAtcaTTCCGACTTTGAGTCCTCTTGGCCAGCCTAAAGAATTAGTGGAGCACATGTCCTTCATTCACCAGTATGACTCCAGGAGAAATCATGACCAACCCTATCAAGGAAAAcgtcACGGAGCCTTTGTGTGGAGCGAGAGGGGGGAGATGGGGCCCAGTGCATTCCAGAGCTCGGAGGGGCTTCGTTCGGACTCAGAGGGGAAAACGTACAATATGAACCTTTCCCAGCATGCCCTTCTGTCCTCTCCACAGATGTATGTGTCCACTGGGACCTTCTCCACCCAGTCAAGCCCTGACCATGGGAACTCCTACAGCAGGAATGACAAGATGGCAGGGATCCCCGCTTAGGCTGGTGGGATCAAAGTCGCAGCGTGAACCATGCTGCACTTGGGTTTGGGAAATACGCAGTGAATCGTCCTTGCCGTCTCTGGTGTCATATCAGTCCTGTTACAAACTATAACTTATAATAAAGAGAATAATACATCTCCGTTTCTTTTCACAACTGTGTTGTGCATCGTATTATTGAAAACAGGTTTGCTGACTGaaattaagtaattttttttcacaaaaaggtAATAGAGCGTTCACCCTCAGATTCCTGCTTTCATTCAGATGATTCTATTTTCTAGAGATTTAATCAGTAGTGAATTATGAATATTCGGGTACTGCTCCTGTTATTTGTCCATATTTTAGCAGCTTACTCACTTTAAATGACCATATCACCACCAAAATAGTTCATCTGTggcacaaaacaaataaaatgtgatgtaaTGCTTGTGCCTTGACCCACCCAGTAAGAGCCACTGCTGTTCCATACGTTACAGTAATGCCTCATCAAATATGAATGCATTAAGGATGCACTGTATGGGAAAAAGTCCTGAGGTTTAAATGCTTAATGGAGAGGCTAAGAGTCCACCCACACAGACCACATTCTCATAACACAGAAACAGGGCAAGTGTTTATGTCCGGTTGTTTGTTTAAGCTGCAATGCACTTGACTTTGACACTAaacattatgtttaaaaaaaaggcatgtaCAGTTTTTTATCTTatgcactttatttttcaccCACAATTCTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 370652 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 678573 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 972404 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1238531 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 1244979 4839988 ~ 4840693 (-) True G176028
TU209304 lncRNA upstream 77437 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 89574 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 166036 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 262813 6357574 ~ 6358087 (-) True G176938
TU209473 lncRNA upstream 363605 6458366 ~ 6459631 (-) True G176959
XM_026930527.2 mRNA downstream 865 6001691 ~ 6084807 (-) True sptbn1
XM_034308420.1 mRNA downstream 87535 5949048 ~ 5998137 (-) False eml6
XM_034308419.1 mRNA downstream 87535 5949048 ~ 5998137 (-) True eml6
XM_026930297.2 mRNA downstream 156543 5924209 ~ 5929129 (-) True LOC113536410
XM_026930734.2 mRNA downstream 227346 5854377 ~ 5858326 (-) True rbbp9
XM_026930304.2 mRNA upstream 5268 6100029 ~ 6109372 (-) False LOC113536415
XM_026930303.2 mRNA upstream 5268 6100029 ~ 6109344 (-) True LOC113536415
XM_026930590.2 mRNA upstream 132333 6227094 ~ 6296876 (-) True LOC113536569
XM_026930872.2 mRNA upstream 263376 6358137 ~ 6461826 (-) True galnt18b
XM_034308556.1 mRNA upstream 460958 6555719 ~ 6567757 (-) True ctr9
TU209010 other downstream 377407 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 377407 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 771418 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 795078 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 888854 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1386688 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1485673 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1485673 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1485673 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1485673 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile