RNA id: XM_026930304.2


Basic Information

Item Value
RNA id XM_026930304.2
length 827
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113536415
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6100029 ~ 6109372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTCGTTATAAAAATGTCTGGAAATCTCGCGATAAAAAGCGGTATTTGCGGACTCGCGAGGCGATATAAATATACGGTGTTTATGTTTGGCTACGATTTGAACGTTTTCTGGCTCCTTTcgcttttcttcctcttccctCTTTCTCAGTTCGCCATGTCTTCAAAATATGCATCTGTAGATTTCGAAGTTTTCGGCGATGTTCAGGGTGTGTGCTTCAGAATGTACACAGAGGATCAGGCGAAAAAGCTCGGCGTGAACGGCTGGGTGAAGAACACCAGACAGGGCACCGTGATCGGCCAGGTCCAGGGCCCTCCAGAGAAAGTCAGCGAGATGAAGCACTGGCTGAGGTATGTTGGCAGTCCCAGCTCTCGTATCGACCGTGCTGAGTTCACTAACGAGAGGGACATTTCTAAACTGGAGGTCCGTGGATTCGGCACTCGTTATTGAATTCCACCTCCACGACAACGGCTCCTTAACCTTTTCAGAAAGCGTTCATAAAGAATTCAGCCATCCTATCCTCCCTGCTGAGTCACCTTCATTACCAGACTGTTATATTTAAGCCTCAATGAACAAAGCATTTATCAAAATGTAACCAAAGACTTAACTATTgcattattaatacatttatatttattactagATTTTCTGTATGTATAAAACCAagcattaatatttacaaattaaataaactatgtttatttcattatttctttacttATGCTGAATCTGTGACTTCTCCAAACTTGTGTTACAGTACAGAATTGCCAAATGATTGTTTGCATTTTAACGAACCACTCAGAAATAAAGCATTATACTGGAATCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003998 acylphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 385009 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 692930 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 986761 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1252888 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 1259336 4839988 ~ 4840693 (-) True G176028
TU209304 lncRNA upstream 62826 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 74963 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 151425 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 248202 6357574 ~ 6358087 (-) True G176938
TU209473 lncRNA upstream 348994 6458366 ~ 6459631 (-) True G176959
XM_034308409.1 mRNA downstream 5251 6085672 ~ 6094778 (-) False LOC113536414
XM_034308408.1 mRNA downstream 5268 6085672 ~ 6094761 (-) True LOC113536414
XM_026930301.2 mRNA downstream 5269 6085672 ~ 6094760 (-) False LOC113536414
XM_026930527.2 mRNA downstream 15222 6001691 ~ 6084807 (-) True sptbn1
XM_034308420.1 mRNA downstream 101892 5949048 ~ 5998137 (-) False eml6
XM_026930590.2 mRNA upstream 117722 6227094 ~ 6296876 (-) True LOC113536569
XM_026930872.2 mRNA upstream 248765 6358137 ~ 6461826 (-) True galnt18b
XM_034308556.1 mRNA upstream 446347 6555719 ~ 6567757 (-) True ctr9
XM_034308784.1 mRNA upstream 512532 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 512532 6621904 ~ 6643116 (-) False ampd3a
TU209010 other downstream 391764 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 391764 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 785775 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 809435 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 903211 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1372077 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1471062 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1471062 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1471062 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1471062 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile