RNA id: XM_026930307.2


Basic Information

Item Value
RNA id XM_026930307.2
length 2539
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC113536417
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7625496 ~ 7656954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagggaggagggaggaggaggttCGTGCGGCATTAGCGCCTCAGTGCTCGGCTTGTTAGCCTACACTAAGAAGAGAAGTGGACGAGGTCGGTTTGAAGAATGGCTCAGGACGTGTTTCAATCCCACGGTTTCACTCATTAACGTGTCTTTGTTTCTCAGCGTTAGACGATTTGTTTCAGGAAGAGCAAGGAAGGCAGATCACTCCGTTGTCCCTTCGACTTtcagtgtaatctgacagacaTTTCTTGCcatccaagagagcaaaattcaCCCTGTTCTTGTGTGGGAAGGACGGTTTTCCCCTGGAGTCTCCTGTTGACTGGAGTGGTGTCAGTTAGCTCTATGTACAGAACTGCAGTGAGCTGTACCAGCTGAACGATTTGGAGAAAACCAGTAAAAAGTTATGTTCTGCTAATGACACGCTAGCAGACAAAACATTCACGACCAGATTACACAGAACTCCAGATATTTTTTTGAAGATCAAGGTGGCGAGAATGGGCCGTAAGAAGATCCAGATTACCCGCATCGTTGATGAGCGAAACAGACAGGTAACCTTCACTAAGAGGAAGTTTGGCCTAATGAAGAAGGCGTACGAGCTGAGTGTGCTGTGCGACTGTGAGATCGCGCTCATTATCTTCAACAGCTCCAATAAGCTCTTCCAGTATGCCAGCACAGACATGGACAAGGTTTTACTCAAGTACACTGAGTACAACGAGCCTCACGAGAGCCGGACTAACTCAGACATTGTCGAGGCCCTTAACAAGAAGGAGCAGCGTGGCTCTGAGAGCCCAGACGTGGACACATGCTCATATGTTCTCACCccacacacagaggagaaatACCAGAAGATTAATGAAGAGTTTGATAACATGATGCGCAATCATAAAATGCCGGCAGTTTTGTCTCAGCAGAGCTTCTCTATGCCTGTGGCATTACCAGTCTCTGAGCACGGTGTCCACTCCTACAGCAGCATCGGAGCTCTGGGTGAGGCCGGCATGCTGTCTCCATCCTCCAGCACGCTGCAGAGATCTCCAAACATACGACTCACAGcTGGTGTTCACGCTTCCTCAGATCACACACCCAATGGTGTGCACTCTGCTTCAATAGTGAATGGCTACATCAATGCTCAGGGAGAGAACATCATGGGAAGAGGTCTAACAGCCAAAGCTGCAGCACCCCCTGCAGGAAACCTCACAAACATTGGACATAAGCCAGAGCTCAGAGTGCTCATTCCACCATCCTGTAAAATATCACCAGCTCTGccagaggaggaagagggaaaTTTGAGGATAAACAGCCCACCATCCAGCCAATCACTGAGTACACAGGTGGTGTCCATGACAACACCAAGTATGCATCCCCAGGGCCTGCCGTACCCTGCTATGACATCAGCATACAACTCAGATTATGGCTTAATCAGCTCAGAGCTCGGTAACCTACATAGCTTCAGCATGCCAGACAGCCTGAGTTTGGCTTCAGGATCACCATGGCAACATACTCAGACTGCAATTACTTCTCAGGGACTCTCTCGTTCCTTATCCCATGTCTCTGAGCCGTCCTCCAGGTCTTCTCCAATCATGGATATAAAAGCTGAGCCTGTGTCTCCCCCAATGGCTTTCCTCTCTGcccctccctcttcctctctccactCTCCAGCTGAAAGCCTTGCCTCCTCCTGCAGCTCATATGAGGGGAGTGAGCGGGAGGAGCAGCACAGAGACACCCATCCCTCTGTGCCCACCCCAGGTCAGGGCAGTGACCCATCAGAGGGCATCAGGGGTCCATCACTCAAACGGCTGCGCACAGAGAGCTGGGTGACATAGCACTTAATAGGAATAGGCTGTTTGAAGAAAAGCCCTCGTTTTGCATAAGAGACCGCTGTTGAGTTTGCATCGATACGGCCAAAGGGTGTATTAATGACTCATAGTTGGCACACATAAGTACATTTCTGAACCCCAAAATACGTAAAGGGGCACCCTTCAACTTTGTGGATTTCATGCCCACACACAATCAAGGTCCAAAAGACCTCAAGTGTGCCATTTGTGACAGAAGGCTGTATAGGAGTTCAGCTCAGGTCATTTACCTTGTCAGACCATCCACCATCCAGCGTGCTCTCTGCAGAAGTGTTTCAGCATCCAAACATTCAGTTAcatagactatatggccaaaagtttgtggacacccaaccatcacacctatatgtgcttgttgaacatccagatttggtccccttttgctgttataataacctccactcttcaggtgtccacaaacgtatGGCCCTATAGTGTAACTTCATCTCTGCTTTATGAGCTTCACATCAGGTTTTTCAGTGTTGGAagttatttgcattatttaccGGTAGGCCTCTTTTTACACAAAAGGACATCAGTAATCGCTGACTGAGGCTCTATTTATTAAACTAGACATAATGTATTTGGAATACTGTTTATACAGTGttgtatatagtgtacatattgtTGCCTTGAGGTAGCTGAATATGAtccatttaaagaaatattaaattttaaaccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210347 lncRNA downstream 73746 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 116308 7508851 ~ 7509188 (-) True G177682
TU210182 lncRNA downstream 146108 7479158 ~ 7479388 (-) True G177562
TU210179 lncRNA downstream 154286 7470974 ~ 7471210 (-) True G177559
TU210170 lncRNA downstream 183101 7441891 ~ 7442395 (-) True G177550
TU210367 lncRNA upstream 18962 7675916 ~ 7676670 (-) False igf1rb
TU210390 lncRNA upstream 50557 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA upstream 71959 7728913 ~ 7750806 (-) True G177733
TU210491 lncRNA upstream 269339 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 614153 8271107 ~ 8275360 (-) True LOC113536653
XM_034308794.1 mRNA downstream 2023 7595015 ~ 7623473 (-) False mctp2b
XM_026930275.2 mRNA upstream 2092 7659046 ~ 7671661 (-) False lrrc28
XM_034308415.1 mRNA upstream 2092 7659046 ~ 7671577 (-) False lrrc28
XM_026930278.2 mRNA upstream 2092 7659046 ~ 7671402 (-) True lrrc28
XM_026930277.2 mRNA upstream 2092 7659046 ~ 7670029 (-) False lrrc28
XM_034308693.1 mRNA upstream 19167 7676121 ~ 7764430 (-) False igf1rb
XR_004579066.1 other downstream 36681 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 36681 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 36681 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 36681 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 141538 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 585152 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 585777 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 587695 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 589749 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 590736 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile