RNA id: XM_026930312.2


Basic Information

Item Value
RNA id XM_026930312.2
length 5131
RNA type mRNA
GC content 0.50
exon number 29
gene id cemip
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9625189 ~ 9754446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTCATACAAtaacacatgcacgcacgcacgcgccgGCACACGCACGCTCCGCGTTAATCCTTCTCCCGCAGCAGTTTGGATGACAGTTGGGGTTTTTTGCCGAGAAGCGGACAACGATTTTTGTTCGTGCATCCAGGTGCCTTGAAACTCTGTCTGGCCGAACTCCACTGATAGCACTGAAAAATGAAGATCTGGCTTGTACTTCTTGGAGCTTTTCTGCCCATTATTCAGGCCGTTTGTCCAGACCAGATGCCCGGGTTGCAGTCCTGGACTCCCGGCTTCAGCGAATCTCACCGCGTCACCATCGGCTACGGCCGTAAACTGCTTCTTACCTCCTCTGCCACCGTCCACTCCATCGAGATCCTCAACGGAGGAAAGCTTGTGATCGCCGACACTAACCAGCCCATCTTACTTCGTGCCAAACACATCCTCATTGGGAACAACGGCGAGCTGCATATCGGCAGTCCTGAGTGTCCATATAAAGGAAACCTCACCATCTCGCTCTATGGCAGATCTGATGACATCGATGATGACCACAGTTATTTTGGGAGAAAGTATGTTGGTGTAGGAACAGGAGGGACGCTGGAGATTCACGGTGAGAAGAAGCTGTCGTGGACGTTCCTTAACAAAACGCTACATCCTGGAGAAGGAAATGAAAACAGCTACTATTTTGAGAGGAGCTGGGGCAACCGAGGCATCATCGTCCACGTCATCGAGCCCACAACAGGAGAAGTGCTATGCACTGATAGGTTTGACACATACCGGAGTAAGGACGAAAGCAGGCGCCTGGCCCAGTATGTAGAGACAGTGGAGGATGGTCAGATCCTGGCCATGATGGTGAACGATGAGGGCTCGAACAACCTTGAGGACTCAGCTAGGAAAACTCTGGCCAAGCTGGGCAGCCGTCATTTTCATCGGCTTGGCTTCAGGCACCCATGGAGTTTTATTACAGTGAAAGGGGATATGTCGTCAGTGGTGGAGGATCACGCCATTTATCAAGGAACCAAAGCATCATCAGAGGCTAGGAGCTCTCGTTCTTTCCACTCGGGTTATGGTGAACACTTCGTCGTCACCACTGTCAGTCAGTGGGTGCAGGAGGCTGAGTGGACGGAGTGGTTTGATCGTGATGATGAGAGAGGCTCAGGAGATTGGGAGAAGCTTTCCGACCTTCATAAGGCTTTCCCAGAACGTCTGTGCAGCAACCCCCTGGATATTGAgGCTGAAACTGTCGATGGTGTCCCTGCAAACATGACTGGTGACGTGTTCTCCAAATTTGACAAGAACTATGGCCTTGTGTGTCTCAATAAAGACCAGCAGGGAGGGATCTGCCGCAACTACCGCATCCGCTTCCTCTGCGGAAAACTCGtgcgTCCACAGGCCTCCATCTCCATAGACACCCTCTCGAACTGCAGTGTGCTGTTCCTGGCGGACGCAGCGCTCGGATGGCAGCCTGGGGATCGTTTAGTGGTGTCCAGCACGGATTATTCCATGTACCAGGCTGAAGAGTTTAGCGTCCTGCCCTGTGCCACCTGTACTGCACACCAGGTCAAAGTagaaggtaagcCTGTGTTCCTGCACATGGGCGAGATGGTGGATGGGGTGGACATGCGGGCAGAGGTGGGTCTCCTGAGCCGCAACATCCTTATCCGTGGGGAAATGGAGGCTTCCTGCTATGGCTCTGAGCTGTGCAAGTTCTTCAGCTTCGACACTTTCGGCGGTCACCTCAAGGTGGAGCATGGTTTTAAAGCAGTGCACATCCAAGGGGTGGAGTTCATGCACATGGGACAGCAGTCTATGGGTCACTACCCTGTGCACTTCCACATGAACGGAGATGTGGATGAGAGAGGAGGATACGACCCACCCACCTATGTGAAGGACCTGTCTATCCATCACAGTTTCTCCCGCTGCGTCACCATACATGGGTCCAATGGTCTGCTGGTAAAGGATGTGGTGGGCTATGACGCGCTGGGTCACTGTTTCTTTACCGAGGATGGCCCAGAGGAGAGGAATACGTTTGAGCACTGTCTCGGCCTGTTGATCAAGGCCAGCACTCTACTTCCCTCTGACAGAGACAGCAGGATGTGTCGAGACATCACAGACGGAGCATACCCAGGCTACATAGCCAAACCACGGCAGGACTGCAGtgCCACCTCCACATTTTGGATTGCTAACCCCAATAACAACCTGATCGACTGTGCAGCTGCAGGTTCTGAGGAGACAGGCTTCTGGTTTATTTTCCACCACGTCCCCACCGGTCCATCAGAGGGCATGTATTCACCAGGCAAAACAGAACACACTCCACTGGGACAATTCATCAACAACCGAGCCCACTCTAACTataggGCAGGGATGATCCTTGACAATGGTGTAAAAACCACTGAAGCTAATGCCAAGGACAAGAGACCCTACCTGTCACTCATAGGGGCCagGTATAGCCCTCATCAGGATGCCGACCCCTTTAAACCCAGAGTGCCTGCTCTCATCCACCACTTCGTGGCTTATAAGAACCAGGACCATGGGGCGTGGCTCAGGGGAGGAGACATCTGGCTCGATAACTGCCAGTTTGCCGATAATGGGATCGGCCTCACTCTAGCCAGtggaggTACCTTCCCAGATGATGACGGCTCCAGGCAAGAGGTGAAGAACTCGCTGTTTgtgggagagagtgagaacCGAGGCATGCCTGTCCCCGATGGCCGCATCTGGGGACCGAGTGGTTTGGACCACAGTGGCAGGACTCTCCCGAGAGGAGTGGATTTCCCCATTCGTGGCATGCAGATCTATGATGGCCCCATCAACGTCCAGAACTGCACCTTCCGGAAATACGTCGCTCTAGATGGACGGCATACGAGCGCTTTCGGCTTTCGCCTCAACAATTCATGGCAGAGCTGTCCCAACAACAACGTCTCCGAGATCACATTTGATGACGTTCCGATCACATCTCGAGTGTTCTTCGGAGAAccgggtccctggttcaatgaGATGAACATGGATGGGGATAAGACCACCATTTTCCATGATGTGGATGGCTCGGTAAGCGAGTACCCTGGTGCCTTCTTGGTCAAAGAGGACAACTGGCTCCTGCGCCACCCTGATTGCATCGACGTGCCGGACTGGAGGGCCGCCATCTGCAGTGGACGCTATGCTCAGATTTATATCCAGGCCCGGAACCCAGCCAATCTAAATCTGAAGATGGTGAAGGATGAGTATCCGGACAAGCCACTGGAGCTGGTAGGAGCTCTGGGGAAGAAGCATCACTACCAGCAGTTCCAGCCTGTGGTCATGCTGGCTAAGAGCTACACAGTGCATTGGGATGCTGCTGCACCGGCTGAAGTCACTGTATGGATCATCAACTTCAACAGGAACGACTGGATAAACATTGGCTTCTGTTACCCGAAAGGCACAACGTTCAGCATCATCTCTGACCTTCACAACCGGCTCACCAAGGAGACGAGGAAGACGGGGACGTTTGTGAAAACAGCTCAGAGGGAGAAGATCAGCCACACACACCAGGCAAGGGGTTATTACTACTGGGAGGAGGATACTGGGTTGCTCTTCCTCAAGGTCCAGGCTCACAATAACAGAGATGCCTTTGCATTCTGCTCACTGAAGGGCTGTGAGAGAGTGAAGATCAAGGCCAACATCCCGAAAGGCAGTGGTCCTAGTGACTGCATGGCACAGGCCTACCCCAGATATGCCGAGATGCCCGTAGTGGATGTACCCGTGCCCAAGAAACTGCCCCGCTCCAGCCTACCTCAAACATCTGAGCACTTTATGGAAGTCAAGGTGGAGTCTTACACCACTCGTTTCTTCCACATCAAAGAGGACTTTGCCTATGCTGAGGCCAATGGTAAGAAGATCTACCAGTCAGAGGATGGAATCCATCTGACGGTGCTGGATGGCCACAACGGCAAAGTGATGGAGACGAAAGGCTTCAGGAACGCTGTGCTGATGGGCATCCCAGCTCAGATCGAGAACTACATCAACAGCCTGAGTGAcgaCTCTGTAGTGATGATTACCTCCAAGGGCAAGCTGGTCACAAGGGGACCTTGGACCAAGATACTTGAAAAGCTGGGTGCTGACCCGAATGTGAAATTGAAAGATAAACTGGCGTTCGTGGGCTTTAAAGGCAGCTTCAGGCCTGACTGGGTGAGACTGGAGGTGGATAAAGAGCATGCCAAGCTTCACCAGGTGCTACCAATGCCCATTGTACGGGTGATGAAGCTCTGAGATCCTCCAGCGCTGCCCCTGATCACTCATgcacagccagaactactgaaCTCCGCCGGCCAATCTAAAGCAAGCATGCGTTCGCGTCACTCTTCTCATCCggatcagtgtgtgatgtcGATGTACGTGATAATGTGGACATTATGTGAATCTTTCAGATTGTGTTGtcagtgtaaatataatttctgccacatgagagagaaaaatgtgagAAAGATGCACCacattccttgtttttttttttctgccctcTCTCTGTGGTGATTGTCATtccaaaaaaatcatgttttctatcctgtaaaaaaaaagttttcagatTGTCAACGTTGTGAGGTCTGAGGTTTTTGCCATTTCATTATAGCATACCGGATTTTGTGGTCAGTTTGTTGTAGCATACGAGAGAACCAGAAGGAAAAGAGCATGCAGTCAGACTTAATGAATAGctgcagaggggaaaaaaaagcacagctacGTATATGCGTTTGGGTTTAAACCTGTGAAAAGATTTGACAACGTGTATTCCATCAGGCAGGGAAATAGCCGAAATAGCTGGTCTTTTTTCGGAGGTCTTGATTTGTTAGTGATTtgtatgttttatgtgtttCTAAAATCCTTCAGATTGATAACAGAGATATATTTTCTACTTATTTATTGTACAGGCACTATTGAGCAAATTCAAAATGGACATCTCTTTTAAGTTGTAATGTAATTCTGTccaatctgtaaaaaaaaaaaaaaaaaattgcatctgaacaataTTCCACTTTCTTGTATTATTGGAAATTTGCATACATTAACCTTGAGTTGTATATTGATGTGCTGTAAATGTGACTGATTTTAAAGTAATGTATCACTTTGAATCAAAActtttgtacagaaataaatgataaagatATGA

Function

GO: NA

KEGG:

id description
K19031 CEMIP, KIAA1199; cell migration-inducing and hyaluronan-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211578 lncRNA upstream 142269 9482335 ~ 9482920 (+) True G178789
TU211548 lncRNA upstream 292311 9320960 ~ 9332878 (+) True G178763
TU211550 lncRNA upstream 315006 9309317 ~ 9310183 (+) True G178764
TU211545 lncRNA upstream 323851 9300994 ~ 9301338 (+) True G178760
TU211546 lncRNA upstream 325532 9299386 ~ 9299657 (+) True G178761
TU211632 lncRNA downstream 28095 9782541 ~ 9782746 (+) True G178834
TU211639 lncRNA downstream 70000 9824446 ~ 9907446 (+) True G178839
TU211918 lncRNA downstream 319372 10073818 ~ 10074017 (+) True G179085
TU212048 lncRNA downstream 502320 10256766 ~ 10260608 (+) True G179212
TU212279 lncRNA downstream 732251 10486697 ~ 10491773 (+) True G179425
XM_026930761.2 mRNA upstream 34852 9546746 ~ 9590337 (+) True abhd17c
XM_026930422.2 mRNA upstream 95949 9418525 ~ 9529240 (+) True arnt2
XM_026930424.2 mRNA upstream 95949 9418525 ~ 9529240 (+) False arnt2
XM_026930425.2 mRNA upstream 95949 9418525 ~ 9529240 (+) False arnt2
XM_026930426.2 mRNA upstream 95949 9418525 ~ 9529240 (+) False arnt2
XM_026930794.2 mRNA downstream 16328 9770774 ~ 9774454 (+) True tlnrd1
XM_034308703.1 mRNA downstream 37634 9792080 ~ 9822229 (+) True il16
XM_034308705.1 mRNA downstream 37635 9792081 ~ 9822229 (+) False il16
XM_026930479.2 mRNA downstream 37635 9792081 ~ 9822229 (+) False il16
XM_026930481.2 mRNA downstream 37635 9792081 ~ 9822229 (+) False il16
TU210703 other upstream 1354440 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1354440 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1377101 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1380165 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1381695 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1341707 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1405900 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1405940 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1405940 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1657614 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile