RNA id: XM_026930318.2


Basic Information

Item Value
RNA id XM_026930318.2
length 2385
RNA type mRNA
GC content 0.57
exon number 3
gene id irf2bp2b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7434319 ~ 7437490 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCGGGGCGACCGGAATGCGGAATTATGGGCTGGCGCTCCAGGCAATATTTTGGCTTACGGGTCATTGGTGCAAGTTTTAACAACGCTGGCGTTTGCACGATCCAAGCCAAGATGTGTGGATTGCATAACAATGCGCAAATCGATCCAACAGCCCAGCTGGAGCGCCGAGGGCGAGGGGGAAAGCGCGGCGCATGCGCAGAAGGCGGTTGTCGAAGAATCGAAGTAAATAGAATCGGAGCTGAAACGCTGGAAGCTGAACTTTAGTGACGTCATCGCGCCACACAGAGCTGGCTGGCGGAGTAGTAGTGCGCGAGATAGATAGAGGCGCGCTGTAGTAAAGCACGCACTGCCATGAACTTCGGAGTGTAAACTTCGCTGTTTTTGTCGCCGACGGACTGGTGCGGGAAACTACAacgattttttttctgcttttttttctcttaacaGAACTAAACACAACAGACGGGCGTTTGGAGAATTAGTCGTATTcgttcttttcttcttccttcccCAAAGCCATGTCCTCCGCGGCGGTCGCTGCCTCGCGCAGGCAGTCGTGCTATCTGTGCGACTTGCCCCGCATGCCGTGGGCGATGATTTGGGATTTCACGGAGCCAGTGTGCAGGGGGTGCGTGAACTACGAGGGCGCTGATCGCATCGAGTTCGTGATCGAGACCGCGCGGCAGCTCAAGAGGGCTCACGGCTTCCAGGAAGGCAGGTCGCATGGAGCGGGCAAGTCGGCCAAGGACATTCAGTCCGTGAACCACGCGGCTGGAGACGGTGGCTCGCGGGCGCCGCCGCCGCAGACCCTGGACCGCTACTCCCTCTCTTCGGACAGACCGCCCCGCCTCGGGCCCGAGTATCAGCCCGGCGCCAGGCAGGCGAACGGCCTCCCCGTTCCGAATGGATTCCCCAAACCTGACGAGCCGCCGGAGCTGAACCGCCAGAGCCCCAATCCTCGCAGGGCGAGCGCGGTCCCGCCGAGCCTCGTGCCTTTGGTGAACATTAACGGGGCTCTGCCAGTGAACGCGCTCAACGGCCGGCCACCTCCCATGGGGATCCCGGGCGCGTTAACGGTCGAGCACGGTGGGAAGAGGTCGGACGACGCGAAGGACAAACACCGACCGGACAGCGTGTCTGACCTGGGCGAGAGTCACAAGCGCGACGACTGGATAGGAAAAGGCAAGACGGTCCGCGACCTCATGGCCCTGCAAAATCCGGAAGGCAGGTTCAAGAAGGAGCACGCAGCCATGCAGCACCGAATGGGATACGAGACCTCTGCCTCGTCAAAAACAGATCGAGGCAAGCAACCTCGAAGCAGCATGAAGAGGAAAGCCTCCCCAGAGCCTGAGGGTGAGGGCGCAGGCACTAAGCTGAACGGTGACGGGCTGCCTTGGTCTTCCTGCACATCTGAAGTGCCAAAGCTTCCTGCTGCAGCTCTGCCAGGCTACACCACCGCACCTCCTTCCACCATCTCTCCACACCCACGCACCACGCCGCCTGAGGCTGCTTTGACTGTGCACAACGGCCAGTCTCCCATGGCTGCCCTCATCCAGGCAGCGGACAACGCTGGCAGCGCGGGCACCGGCTCGCCCAAAGACGCCAACCAGGTGCACTCCACTACAGCAAGGAGGAACAGCGGCAGCCCGCTCTCTCCCTCCTCAGCCGGCCAGCGGCGGCTCACCCAAAGGGACGTGATGGGCGCAGGGGTGGCGGGCACGGCTGCTGCAGGCACAGGTGCCAGCCATGTCCCAGGTGTAGTAGACCCTCAGGGTGGTCACCCACAGAGCATTCCGGACTCGTCGGTGCCTCCTGGCAGCGTTCCCCTGTGCTGCACCTTGTGTCATGAGCGGCTTGAGGACACACATTTCGTGCAGTGCCCATCAGTGCCCTCACACAAGTTCTGCTTCCCCTGCTCACGCGAGAGCATCAAACAGCAGGGTGCCACGGGCGAAGTGTACTGCCCCAGCGGCGAGAAATGCCCACTGGTGGGCTCCAACGTGCCCTGGGCATTCATGCAAGGGGAAATAGCGACCATCTTGGCCGGAGACGTGAAagtaaaaaaggagagagaccCTTGATTTTTCCACACTAttctgttttcctcttttttttgttacatttgttttttcttgcaaAAGATTCAAAAACGACaaatgacatacacacacacacatacgatTTCagatgactataaataaatcaaattgcATACCATCCAAGCAGAAATTATGGGACATGTACATATGGACTCAAGGGAAGTGTACACTTCATAAACATGGCTGTATAAATTTTTTTGATTTTCCCTTTTTGAATACattgtttctatattttttGAAGATGAAAAGGTATGTACACATTCTAACAGACTACTTTCACCTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210159 lncRNA downstream 11043 7423023 ~ 7423276 (-) True G177539
XR_003403681.2 lncRNA downstream 17281 7415941 ~ 7417038 (-) True LOC113536470
TU210110 lncRNA downstream 20134 7413967 ~ 7414185 (-) True G177491
TU210088 lncRNA downstream 59084 7375027 ~ 7375235 (-) True G177469
TU210078 lncRNA downstream 141149 7292917 ~ 7293170 (-) True G177459
TU210167 lncRNA upstream 2689 7440179 ~ 7440388 (-) True G177547
TU210170 lncRNA upstream 4401 7441891 ~ 7442395 (-) True G177550
TU210179 lncRNA upstream 33484 7470974 ~ 7471210 (-) True G177559
TU210182 lncRNA upstream 41668 7479158 ~ 7479388 (-) True G177562
TU210337 lncRNA upstream 71361 7508851 ~ 7509188 (-) True G177682
XM_034308645.1 mRNA downstream 79989 7296707 ~ 7354330 (-) True strn
XM_026930513.2 mRNA downstream 80267 7296707 ~ 7354052 (-) False strn
XM_026930841.2 mRNA downstream 181726 7248348 ~ 7252593 (-) True cfap410
XM_026930817.2 mRNA downstream 231455 7192255 ~ 7202864 (-) False si:dkey-93h22.8
XM_026930816.2 mRNA downstream 231455 7192255 ~ 7202864 (-) True si:dkey-93h22.8
XM_026930317.2 mRNA upstream 42932 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_026930575.2 mRNA upstream 55011 7492501 ~ 7500900 (-) True rbm34
XM_034308740.1 mRNA upstream 77757 7515247 ~ 7547820 (-) True nid1a
XM_026930582.2 mRNA upstream 126890 7564380 ~ 7577840 (-) False ero1b
XM_026930583.2 mRNA upstream 126890 7564380 ~ 7576849 (-) True ero1b
TU209010 other downstream 1726054 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1726054 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 2120065 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 2143725 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 2237501 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 43959 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 142944 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 142944 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 142944 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 142944 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile