RNA id: XM_026930326.2


Basic Information

Item Value
RNA id XM_026930326.2
length 3042
RNA type mRNA
GC content 0.45
exon number 5
gene id pdcd7
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8544942 ~ 8549611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCAATTCTGCAGCCCAAGGCCCCTTTGGTAGCCGTCGTGTCCGACTGATAcaaatttatactttttttttatttttttttttttaaaaatgtataccAACAAATTAAAATAGATTAACATAGAGTGTCCAAAATGAGCAATagtaaagtaataaaaagtttaatcatttccacattttgttggACTGAAAGAAGGCGTTAAACATAGCTTTAAGCTTTGCTCTTTGCTACTTATTGTCGttgtactgttttattttataagcaAGACGTTAAATTATTACAACtgactattaattaattaacgaactgtgttttgtatttaaacacaaaacttTAGTTGTCGACAGGCACAAAACTTTAAGCTAATTGGTAGGACCCGGGGTGCAGGATGTACAGAAGATGAGAGATATGACATGACACCGGAAGTGGTGGAATTTTAAAGGCAGTAGATAGACTGCAGAGGAAGACCGCCGTTGGTTGAGGAGTGTGAACATGGACAAACCGCAGCAGTATCATTATTCCGGAGGGACACCGCATCAACCTCCACATCCACCTCCACATCCACCGCATATGGCACCGAGAGGAGACTTTCCCGCAGCACCTCCACCAGAGTCGTGGGATGTTTACCGGCAGCACCAGACTCCGCCGGTTCCACACCGTCACTGGCCCCCGTTTCCCCCGGCACGACCACCGCCGCCGCACGGGTCTCTTCATGTTTACCCGTCCCATCTGCCTTTCGACCCCAGCAGACCTCCTCCTGGTTATTTCGCGACATCTCCAGCACCGACACCTTCTTCTCCTGCAAACCCTGGACACAGTGAGGATCCACCTCGCTTTCATCCACCCAACAGAGCTTACCAGTCTAACATGGATAACTATCATAGAGGACATTTTGATCAGAGTGGCAGCTTTTCAAACTCTGCTCCTCCATCATATCAGTCTAGTTTTCAGTCTAATAACAACATCTCGGCTCATAATTACCCTGTGGACCATCATAAGCAAAGTGATCCATCACAGGTTCCTCCTGATCACTCTGACAGAAGCAGCAACAAGCAACATGAGGATGCTTGGCAGAGAAAACAAGACGAGCAGTGGATTCATGCTTTCttacaaagaagaagaaaaacagcacCTTCTTCTGTGAGGCACTCTCCCCCAAAACAATCTGTGTCGGATTTCAGAGAGAAGTTGTACACTGCGGTTAAAATGCTATCTGAGCTCTCTGAGGTGTGCCAAACGTTAAAAAACAACCTTGAGAATGAAACTGTATGGACCGACTCGTACTCAAGAGCAGTGGAGCTGAAGAGCAGCCTGGAGGAAAGCCTGAAGACTCTGAATGATCCGGACAGAGTGGACATGGTGAAGAAGAAGCTGGCTTTGATCAAGAAGAAGCGAGCACGCATGCGCAGGAAGAAAGCCGAGCGCGAGGAGGAGAAACAAGAGCAAGAAGCACGAGCAGCAGAGAAAGAGGCGGCCATTGATAAGCACCAGATGAAGAAGATACAAGAAATCgaagaaaaaaacaggGAGCAAGAACTGAAGCTGGCGGCCGATGCTGTGCTCTCTGAAGTCAGGAGGAAGCAAGCTGATGCCAAGAGAATGCTGGACATCCTCAAAGCTCTGGAAAAGCTGCGGAAACTCCGCAAAGAAGCTGCATCCAGGAAAGGCATGTTTCCAGAGAAGGAGAGTGACGAGGTGTTTGAGGGCCACCTGACGCGGCTCAGGACTCTGATCAGGAAACGCACGGCTGTCTACGGGGCCGAGGAGAAAGCACTGAGGGTCATGCTGGAGGGAGAGCAAGAGGAGGAACGCAAACGTGATCATGAGAAGcggcaaaaaaaagaaagagagaagctgCTGCAGAGGAAACGGGAGATCGACATGATGCTATTTGGAGCTGAACTGCCTCTTGATCATCCGCTTCAGCCGTACCAAGAATACTACACCCAGGCAGAGAGGTCACTACCTGCCCTCGTCCAAATAAGGAGAGACTGGGATCAGTTTTTAGTTCCTGTGGATCACCCTGATGGTTCCACCATTCCTCAGGGCTGGGTTCTACCTGAGCCGCCAGCTGATGACGTCTGGGCCATCGCTCTggagaaataaacatctaaggaAACCACATCCTATTCATTACTGAATGTAACTGACTGATATTTCAAAGATTGACCATTGGACTATGACTTGGCGCTGTTTTATGGTGCACCAATCTCCAACTAAAGACAGCTATTATTTATTGTACTATGTAATACTTTAGAAGAATAAACTGTATGTACTGAGTTGTTTATATTGAGTGAGTGTTACTGTGGTTTCTTTTGAAAAGCAAAGCTGAGGAGTGATCAGCCCTGGACGTTCTCCAGATTTAGCCACAAACCATGTTGTCTAGCAACGGTGAACTTAGTGATCACGCTGTGTAGCATGACAATAACAGAATTTTCCTCAGGAATGTTTATAGTGGTCATGCTGACAGTGCAGTGTTTACATCTAATCATTACAATGCAAAAATTTACAGaaaagcatgttttattttaaaatgccaaAATGTCTGGTTTTTTTggctttcattttttctttaatgttttaaatctgctgtatttgttatttgtattaAATGATCTGAAATGGAAATGGGCTCAGGTAAACAGCTGATGGTGAGGTGTTATGTCTGTGGATTAGTGGAGCAGAGGGTTATCCCTCTAAGCAGGCTCACAAtaacatcacaaacacacacagcttcagctCTTAGACCACACGCACTCCAGAAAACACAGGTGGGTGATGCACATGCTGTTTGCTTTGGTGCAACTTTTCCAAGTAAAGGTTTGCTTGTTATCTTGTTTTCAGATGTGTTTTGGGGTAGGGCATTGATTGGCTGTAAGATGGTTATTTGTGGGTTTTGTATAAGCATTGGGCTACTTGTTTGAGAAACGATCTTCAACAGGTCTTGTGGTTTTGTCTATAAATGGTCTAGATAGTAAAcaaggtgttttttgtttgtaatcCTGTCTAGACGCATATTAAAACGTGATTGTGTCCTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210939 lncRNA downstream 22857 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 220778 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 269582 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 617884 7926293 ~ 7927058 (-) True G177807
TU210396 lncRNA downstream 794136 7728913 ~ 7750806 (-) True G177733
TU210961 lncRNA upstream 43575 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 161566 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 433607 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 454033 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 637460 9187071 ~ 9189914 (-) True G178673
XM_026930901.2 mRNA downstream 967 8534968 ~ 8543975 (-) True ubap1lb
XM_026930815.2 mRNA downstream 15499 8522608 ~ 8529443 (-) True rasl12
XM_026930543.2 mRNA downstream 36612 8491252 ~ 8508330 (-) True abhd2a
XM_026930902.2 mRNA downstream 75510 8453004 ~ 8469432 (-) True LOC113536763
XM_026930322.2 mRNA downstream 93690 8373495 ~ 8451252 (-) True furina
XM_026930548.2 mRNA upstream 757 8550368 ~ 8564908 (-) False clpxa
XM_026930546.2 mRNA upstream 757 8550368 ~ 8564907 (-) True clpxa
XM_026930549.2 mRNA upstream 757 8550368 ~ 8564906 (-) False clpxa
XM_026930547.2 mRNA upstream 757 8550368 ~ 8564906 (-) False clpxa
XM_026930613.2 mRNA upstream 22864 8572475 ~ 8589352 (-) False ankdd1a
trnar-acg_8 other downstream 297180 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 298167 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 300221 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 302139 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 302764 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 341016 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 972805 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1264281 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2694364 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2859481 11409092 ~ 11415440 (-) False G179803

Expression Profile