Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930338.2 |
| length | 1068 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 2 |
| gene id | senp8 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 5033239 ~ 5035405 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| id | description |
|---|---|
| K08597 | SENP8, NEDP1, DEN1; sentrin-specific protease 8 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208361 | lncRNA | upstream | 72713 | 4912078 ~ 4960526 (+) | False | G176056 |
| TU208360 | lncRNA | upstream | 111185 | 4916775 ~ 4922054 (+) | False | G176056 |
| TU208359 | lncRNA | upstream | 111185 | 4919768 ~ 4922054 (+) | True | G176056 |
| TU208344 | lncRNA | upstream | 139882 | 4893142 ~ 4893357 (+) | True | G176041 |
| TU208292 | lncRNA | upstream | 172296 | 4787742 ~ 4860943 (+) | True | G175999 |
| TU208784 | lncRNA | downstream | 385482 | 5420887 ~ 5424095 (+) | True | G176384 |
| TU208802 | lncRNA | downstream | 436407 | 5471812 ~ 5568100 (+) | True | G176401 |
| TU208808 | lncRNA | downstream | 470365 | 5505770 ~ 5509854 (+) | True | G176406 |
| TU208838 | lncRNA | downstream | 567251 | 5602656 ~ 5614328 (+) | True | G176430 |
| TU208878 | lncRNA | downstream | 641801 | 5677206 ~ 5690860 (+) | True | G176469 |
| XM_026930739.2 | mRNA | upstream | 296835 | 4730499 ~ 4736404 (+) | True | rps17 |
| XM_026930608.2 | mRNA | upstream | 307489 | 4692533 ~ 4725750 (+) | True | csnk1g1 |
| XM_026930609.2 | mRNA | upstream | 307489 | 4692533 ~ 4725750 (+) | False | csnk1g1 |
| XM_026930359.2 | mRNA | upstream | 382147 | 4647397 ~ 4651092 (+) | True | fadd |
| XM_026930514.2 | mRNA | upstream | 388216 | 4613406 ~ 4645023 (+) | True | ano1a |
| XM_026930743.2 | mRNA | downstream | 272616 | 5308021 ~ 5310159 (+) | True | rxfp3.3a2 |
| XM_026930920.2 | mRNA | downstream | 279062 | 5314467 ~ 5355290 (+) | True | drd4b |
| XM_034308471.1 | mRNA | downstream | 307397 | 5342802 ~ 5355290 (+) | False | drd4b |
| XM_026930350.2 | mRNA | downstream | 331456 | 5366861 ~ 5377891 (+) | True | LOC113536448 |
| XM_026930282.2 | mRNA | downstream | 344506 | 5379911 ~ 5388579 (+) | True | si:ch211-146m13.3 |
| TU208265 | other | upstream | 372103 | 4656605 ~ 4661136 (+) | True | G175977 |
| XR_004579071.1 | other | upstream | 735992 | 4281244 ~ 4297247 (+) | False | nadsyn1 |
| TU207714 | other | upstream | 1374963 | 3647370 ~ 3658276 (+) | False | btbd10b |
| TU206600 | other | upstream | 2954612 | 2078077 ~ 2078627 (+) | True | G174546 |
| TU206587 | other | upstream | 2972956 | 2058970 ~ 2060283 (+) | True | G174536 |
| XR_003403680.2 | other | downstream | 2086980 | 7122385 ~ 7131506 (+) | False | LOC113536390 |
| TU209855 | other | downstream | 2232479 | 7267884 ~ 7271320 (+) | False | rpl37a |
| trnae-cuc_24 | other | downstream | 2566821 | 7602226 ~ 7602297 (+) | True | trnae-cuc_24 |
| trnar-ucg_6 | other | downstream | 3208017 | 8243422 ~ 8243494 (+) | False | trnar-ucg_6 |
| trnar-acg_6 | other | downstream | 3209547 | 8244952 ~ 8245024 (+) | True | trnar-acg_6 |
