RNA id: XM_026930346.2


Basic Information

Item Value
RNA id XM_026930346.2
length 2055
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC113536444
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 37138 ~ 41104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGATCTGCACCATGTCCCCGCTGCACGCCGCGACTCCGACACAAGCGCTAACTTTACAAACGGAGACGTCGCGGCCGATCACTGATTGAGAAATGAAATCGATGAACAGCTCGTTATCGCTGCTGACTTTGTCTTACGGCAAGACGGTGTTCTACTTGTGTACTTTACTCTGCAGCTGCTTGACTTTCCTGGTGATCCGGCAGCTGTTGCGGCAGCGGAGACCGCGCGGCTTCCCCCCGGGACCGGCCGCCCTGCCGGTGATCGGTAACATCCTGTCTCTCGCCACCGAGCCGCACGTCTACATGAAGAAGCAAAGCGAGATCTACGGCCAGATCTTTAGTCTCGACTTGGGAGGAATATCAACTGTCATTCTAAACGGCTATGACGTCATCAAAGAATGTCTGTATCACCAGAATGAGGTGTTTGCAGATAGGCCATCTCTACCTTTATTCcagaaaatgaccaaaatgggAGGACTTCTCAACTGCAAATATGGTCGTGGATGGATTGAACACCGCAAGCTGGCTGTTAACAGCTTCCGCTATTTTGGCAGTGGACAAATGATGTTTCAGAGGATATCTGAAGAGTGCATGTTCTTTGTAGATGCCATAGACAAGCACAAGGGAAAACCTTTTAACCCCAAACACCTGGTTACGAATGCAGTCTCCAATGTTACCAACGTTGTAATATTTGGACAGCGATTCACCTATGATGACCTGGACTTCCAGCACATGATTGAAATCTTCAGTGAGAATGTGGAGCTGGCTGCTAGTGCCTGGGCCTTCCTCTACAATGCCTTCCCCTGGCTTGAATACCTGCCGTTTGGGAAGCACCAGAGGCTCTTTCGCAATGCTGATGAGGTGTATGACTTTCTGCTACAGATAATCGAGCGCTTTTCACAGGGGAGAGTGCGGCAACTGCCAAGACATTACATCGATACCTATTTGGACGAAATGGAACAGAGTGCTAGGGACAAAAACATGTCCTTCTCCAGAGAGAACCTGATCTTCTCAGTAGGAGAACTTATTATTGCAGGCACAGAGACCACTACTAATACCCTGCGTTGGGCCATGCTCTACCTGGCTCTCTACCCCAGTATACAAGATAAGGTTCACAAGGAGATTGACTCCATCTTAAATGGCAAGTTACCAACTCTGGAAGACAAGCAGAAGATGCCTTATGTGGAAGCAGTGTTGCATGAAATCCTGCGGTTCTGCAACATTGTTCCTCTTGGCATCTTCCGGGCCACTTCTCAGGATGCTGTCGTGAGAGGATACACCATCCCCCAGGGGACCATGGTCATCACCAACCTGTATTCTGTGCACTTTGATGAGAAATACTGGAGCAACCCTGCTGTCTTCTGCCCTGAAAGGTTTCTGGACAAAAATGGGAACTTCATCAAACGGGAggcctttcttcctttttcagtGGGCAGACGCCAATGTCTTGGTGAGCAGCTGGCCAGAATGGAGATGTTCCTCTTTTTTACCACGTTGCTCCAGAGGTTTCGCCTGCAGTTTCCCAAAGGCTACATTCCAAGCATCACTCCTAAACTTGGCATGACTCTGCAGCCACAGCCTTATACCATATGTGCTATCAGGagacaacaataaataaaaacaataaaacaataaaacttcATCTGTTCGCCAAAGGCAGATATTCTCTCACCTCAGGGGATCTTATTGAGAAGCTCAACCAACCAGCTTAGATTTCTTGCTCTGAATTCTGTCATCTTTGGCAGAAAGCACTGAACTCTGGTACTGACTGTGCAGAATTCTTTGAACATGTCTGCTATATGGCTTCACAAAGCTCATGCAGAGAGTGAGCAGTGGATGAGGCCTGGAAATGTATATGCACAACTGGATTCCTTAGTGTGCACATTGTAATGAATAAGAGCTTTAGAACACTGTTGTAAATGAGAGCTGTGTATTTCGTAACTTGAACCGACCAAAAAACTGCACTGTGGTTGTAAATGTAAGGGAAGTCAGGTTATGTCAATAATTTACAGAGTGCACCTTTCAAACAGTTTtgcagaccttttttttttttt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07419 CYP2R1; vitamin D 25-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205446 lncRNA downstream 75993 117097 ~ 117299 (+) True G173525
TU205486 lncRNA downstream 209395 250499 ~ 250827 (+) True G173563
TU205465 lncRNA downstream 222262 263366 ~ 263913 (+) True G173543
TU205591 lncRNA downstream 293924 335028 ~ 335754 (+) False G173662
TU205592 lncRNA downstream 293924 335028 ~ 335754 (+) True G173662
XM_034308862.1 mRNA downstream 78691 119795 ~ 140572 (+) True copb1
XM_034308652.1 mRNA downstream 114425 155529 ~ 194491 (+) True rras2
XM_034308653.1 mRNA downstream 125942 167046 ~ 194491 (+) False rras2
XM_034308433.1 mRNA downstream 160024 201128 ~ 263060 (+) False tub
XM_034308435.1 mRNA downstream 160024 201128 ~ 263060 (+) False tub
TU205686 other downstream 527709 568813 ~ 570326 (+) True G173748
TU205778 other downstream 700917 742021 ~ 742710 (+) True G173819
TU205870 other downstream 1320678 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 2017866 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 2036973 2078077 ~ 2078627 (+) True G174546

Expression Profile