RNA id: XM_026930348.2


Basic Information

Item Value
RNA id XM_026930348.2
length 3159
RNA type mRNA
GC content 0.41
exon number 10
gene id sirt7
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5845459 ~ 5853826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaagtCTGTTCCGGTTTGTATCGGGAATAATGAAAGAAGTAGCAAGTATGGAGTCACAAACAGAGCAAAGCGGGCTTTCTCGAGCAGAGAGGAAAGCTCTTGAAAAAGCTAAACTCATTCAGAAGGAGACTCAGAGAAATAGTTTTAAACTGGTGGCCAGGATATTAAAGAAACCTGAATGTGAGCGAACCGAAGAGGAGCGCACTTTACTTCAAGGGCATCAAGACACTGTGCAAGAGCTGAGCAAACGCCAGGCTCGGAGGAACATCCTGAAACGGAAGCAGGAAGAGCTCTTTGATGATGAAGAGGATCTGAGGACCAAAGTGAAGCAGCTGGCCGAAGCGATGCGTCAGGCTCGCTATGTTGTCATCTACACAGGAGCCGGGATCAGCACGGCTGCTTCAATCCCGGATTACCGCGGGCCTAATGGAGTTTGGACTCAGCTACAGAAGGGGCTCGCTGTCAGGCACTCTGACCTCAGTGAAGCAGAACCGACTCTGACTCACATGTGTATCCAGATGTTACACAAGGTCAAAATGGTTCAACACGTGGTTTCTCAGAACTGTGACGGTCTCCATTTGCGCAGCGGGCTTCCTAGACATGCCCTGTCTGAGCTGCATGGGAATATGTTCATCGAGgtgtgtgtgtcgtgCACTCCGGTTCGTGAGGTGATCCGTCTGTTTGATGTGACGGAGCGTACGGCGCTGCACAGGCACGCTACAGGCCGGTGGTGCGCTCACTGCAGAGGGGAGCTGAGGGACACTATAGTGCACTTTGGTGAGAGAGGCACCCTGGAGCAGCCGTTAAACTGGAAAGGCGCAGCTGAGGCCGCAGAGCAGGCCGATCTCATCCTCTGTCTTGGCTCCAGCCTGAAGGTCCTGAAGAAGTATGCTTGCTTGTGGTGCATGAAAAAAACAGTTGCTAAGAGACCAAAGCTATACATTGTCAACCTTCAGtggaCACCAAAAGATGACTTGGCCACTCTGAAAATACATGGaaagtgtgatgatgtgatgcgTCTCTTGATGGAAGAGTTGGGAGTTGAAATTCCAACCTACAACAGATCTGAGGATCCCATCTTCAGCTTAGCCACCCCTCTCAGACTGGATGAAGAGGACAGTCACAGCCGTAAAACTTTAGCGGCCCCTGCTGCTCTGGAGTACTCTGAGTCTGATTCAGGGAGTAAAGATGAGGAGACAGGAGTACAGGGTGGCTGGTTTGGGCGAGGTTACTCCAAAgcgaggaagaaaagaaaaactacatAGTGACATGTAGTTTCACTTCAGGATAGCAGAGATTTGCTTTAAAGAAACATTCCACGCACGATctatatttttatcattatacTGCAAATCCAGCTATCTTGGTATATTATTACGAGACAATACGGTCACCTAGGTGACTGAAAATTCTTTACTAAGCAGTGCAGATTTGCTCTCAGTGGAAAAATAGTGGGGGTTTCTATTCATCTGATAATAAAACTGCCAAAAATGCAATGAAGGATGATAGAAACAGACTTTTAAACTATCAAGTCCAGTAGGTATATTCTCATATTCTCATTACAAGGACATTGTAttttgctgacttttttttttggaaactccCTTAATTTCATGGATTGAAGGGGGAAATAAGTGTGCATTCAGGTAAAATAACTAAACCAGCCTAAACCTCAGTATAAAAGTGTCTCTGCTGTAAATAATTACAGTTTTAATACTGTGTGGAATGTTTCTTTAAGATAATAATAGCATTAGGACTGTGCCAGTTTTCCAGTATTAGCCATTTGCACCATACGTTCATTCTCTCAGGTATTAAGCAAAATGACTCAGTTATGCTTAGAATCAGTGTTGAGAGAAGTTAAATGAAGTCTAATTCTGACTCCTGTGTGGTGGAGTTTTGTTTTACTTGCTCGACCACATCTAGTCTGCGCAAggtcagaaaatgaaagaaatctgTAGTGCAGATTTTATAGAAGTAGCTTGCTaagttaaaatgatttatatagaCTAGGACAAAGTCAGTTTATGAATAATGTACAGCAGCGGTCATCCATTAGGCGTTCACACTTGGCGTTATTTTTTGCCCCCATCAACCACCAGACCATGTTTTGCCTGTATGTGACCATGTTTTTAGTCCTATGTAAGGTGGCCACAAGGTGGAACAATCTGATCTAAAACTGGGGGaggcagaggaaaaaaacaaaaatttgtgAATTAGTATAGGGAGATTTAGAacataatgaaaagaaaatatattgttGCCAATATTTCAAAATCACAAtctaattaaaatgaacaagCTGTCAATTTTTTTTGGGACATTCACCAGTATGTGATGTAACATCCCACTTTAACTGATGCTACACTCAGTCAGGTcgcacaagcagctcaaattctaTTCTATGTTCTGCATCCAAAGCTAGACAGGACAAGAAGGCCTAGTCGGTTAGCTGATACTAGCTGGTAAGAGCATTCTTATAGTTGCAGCTCACACAATGTgatacaatttttttcccctatgtCAGTACAAAAGGCTACTTCTTTTATAGAAGGAAacagtgtgaaagcacccttgCAGTTGTCATTGGGTCAAATTCTCAACAGTGTTTGTGGCAGCAGACAAACATTGATGGAAATTATTACTTTTCAGAACATTATTGCCTTCTACAGTCTATGTAGTGCGTCAGGGGTACATGGGTCAGAGAAAATTCCTAATGATGTACAGCTTGATAACTAACAAGCTGTATATATGACCTTTTCTTTTAAAGGATGATGTGGAGTTACTTCTTGAAGATTTCTAATTTAGCAGTGATTCCGTCGCTGCTCATTAACACTATGTTTACATGAACTCAGTTAAAGGCATAGTCTTAAGTTACTGTGGAAATGTACTGATCCTCAGAGAAATGaaaattttacatatatatatatatatatgagagagagagactaacaTGTCTCATGTGTTTGTATTACATTTGCCTTAATGTAGTTAAGTAAGTTTGtttgaattttctttttaagtttattttaacCCTATACAAGGGTTTGGTTTTTGTATTTTGgtgtatgttttggatttgtaCAGACAGAACCACTATGTTTAATGTACCTCTAACTTGAACTTTTTTGTGCtgtcaaaataaaaaggaaaatttgtcca

Function

GO: NA

KEGG:

id description
K11417 SIRT7, SIR2L7; NAD+-dependent protein deacetylase sirtuin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209042 lncRNA upstream 30353 5814595 ~ 5815106 (+) True G176596
TU208878 lncRNA upstream 154599 5677206 ~ 5690860 (+) True G176469
TU208838 lncRNA upstream 231131 5602656 ~ 5614328 (+) True G176430
TU208802 lncRNA upstream 277359 5471812 ~ 5568100 (+) True G176401
TU208808 lncRNA upstream 335605 5505770 ~ 5509854 (+) True G176406
TU209054 lncRNA downstream 1699 5855525 ~ 5857242 (+) True G176608
TU209160 lncRNA downstream 97988 5951814 ~ 5952155 (+) True G176700
TU209210 lncRNA downstream 217121 6070947 ~ 6075427 (+) True G176746
XR_004579052.1 lncRNA downstream 240377 6094203 ~ 6100027 (+) True LOC117598391
TU209478 lncRNA downstream 700768 6554594 ~ 6555007 (+) True G176964
XM_026930669.2 mRNA upstream 17063 5788447 ~ 5828396 (+) True ankrd13c
XM_034308805.1 mRNA upstream 18146 5788453 ~ 5827313 (+) False ankrd13c
XM_026930675.2 mRNA upstream 72543 5763807 ~ 5772916 (+) False rfc4
XM_026930676.2 mRNA upstream 72543 5763828 ~ 5772916 (+) True rfc4
XM_026930579.2 mRNA upstream 135118 5708389 ~ 5710341 (+) True gemin6
XM_034308464.1 mRNA downstream 7604 5861430 ~ 5865960 (+) False zgc:194981
XM_034308465.1 mRNA downstream 7771 5861597 ~ 5865960 (+) True zgc:194981
XM_026930843.2 mRNA downstream 13238 5867064 ~ 5888843 (+) True tdrd3
XM_026930753.2 mRNA downstream 263449 6117275 ~ 6119629 (+) True foxg1b
XM_034308728.1 mRNA downstream 313652 6167478 ~ 6174101 (+) True LOC113536615
TU208265 other upstream 1184323 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1548212 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 2187183 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3766832 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3785176 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1268559 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1414058 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 1748400 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2389596 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2391126 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile