RNA id: XM_034308627.1


Basic Information

Item Value
RNA id XM_034308627.1
length 1616
RNA type mRNA
GC content 0.49
exon number 9
gene id dkk3a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3912784 ~ 3922969 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agttttctgtgagaaatgAACCATGCACGCGGCAGCATATGCGCTTTGTCAGcatctctctgtctttcacgcCCACTATTCAGCGCTCCGCTGGCACCGCGCGCGAGGGTGGTGCATCTTGCGTTGTCCTCCGCGCGCGCGCGCCTCATCGCTCTGCATCCTTCCATCTTCCATCACGCGGTGAAGATGCTGCTGCTCGCGCTGAGTCTCTGCCTGGTTCCCGTTAATGGACTCCTTCCTGAAACTTGGACAGCTCCCGGTGTGGCCTTACAGTCGCACGCGCCCACAGAGGCGAACGTAGGACAGAAACCGACTGTGCTGAGCGACCTGTTCAGGGAGGTGAAGAAACTGGTGGAAGACACGCAGCGCAAACTGGAGGACGCTGAGCATCAGATGGACAACGAGAGCGCGAAATCCATCCAGCCCATCCATAACATCACCTCAAATTACAGCAACGAAAGCAGCTCGGAGATCGTTAGCGGAAATCAATCTGTTCCTGCTGCGGAGGCGATCAATAAGATATCAGGCAACACAACTGAGGAGATCCACATGACCAGAAGCGTTACCCAGTACAGCAGCAAGGGAGATGACAATGATCATGAGTGTATTATTGACGAGGACTGTGAGAAGGGTAGATACTGTCTCTACAATGAACACTACTCCGAGTGTATGCCTTGCAAGCAGTCAGATGCGATCTGCAAGAAAGATGAGGAGTGCTGCAAGggccagctgtgtgtgttgggtCAGTGTATGAACTCCACTAAAGGAGAAGAAGGAACCATCTGCCAAGAGCAAAGCGACTGTGACAGCGATATGTGCTGTGCCTTCCATGAAGATCTGCTTTTCCCAGTGTGCAGCCCCAAACCCAAAGAACGCGAGCCCTGTAGCATCCCCACCAATCACCTGATGGACCTGCTGTCCTGGGATTCAGGACACAGGAGTCCAAAAGAGCACTGCCCCTGCGCTGGGAACCTGCAGTGCCAACATCTGAAACGCAGATTGGTGTGCTTGAAAAGTCCGACCACCAGCGAAGAAACTCTGAGTGACACAATATACTCCGAGATCGACTACATCATCTAAACCTGGACACTGAGCTCTGCAAACTTCACTGAGCCTGAAAGCCTTTAGCAGTCCGCCGTAGAAAACTATTACTCAAGACCATAACTGTATGTACAATCTGGTCACCATTATCCTGCTTCATGTGCCAGTGTTCAGCTTGTCTACAAGAGCAGTAGCTTTTAGCAGGAAGTGCACCATGTAAAGGTTCACTCAAAGCTCTGTGGACAGGAAAAACAGCATTAGATTaaagatatacactatatacttaGGCGCATATGACTGAATGGTCACTGGTGTGCAAAAGTGAGTACTGTAGATGCTCATAGTTAAAGCTTGGAGTATAGCAGCTCAGGCTTGGAGTATAGCAGTGTTTCAGAGTTCAGCATTTCACACTCATTATCAGTCCTTCCTGTGCTGAATTTGGTGTGTtagacaaaaagaagaaaaattactGCTCCAGGAATGAGTACAACACTCCTGATTATAGAATTAAATCATGTTGTCTCAAAGCTACAGAAATGTAAACttgcaataaataaacagctgaaAAATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207713 lncRNA upstream 266060 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 298387 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 303940 3605162 ~ 3608844 (+) True G175517
TU207662 lncRNA upstream 330845 3579978 ~ 3581939 (+) True G175493
TU207537 lncRNA upstream 459964 3447942 ~ 3452820 (+) True G175389
TU207924 lncRNA downstream 87269 4010238 ~ 4011233 (+) True G175703
TU207982 lncRNA downstream 245218 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 377136 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 445638 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 462816 4385785 ~ 4385994 (+) True G175894
XM_026930804.2 mRNA upstream 254494 3647355 ~ 3658290 (+) True btbd10b
XM_026930845.2 mRNA upstream 265669 3645978 ~ 3647115 (+) True pth1b
XM_026930487.2 mRNA upstream 340521 3565115 ~ 3572263 (+) True LOC113536513
XM_026930288.2 mRNA downstream 96958 4019927 ~ 4039717 (+) True pkd1l2a
XM_026930874.2 mRNA downstream 143610 4066579 ~ 4077728 (+) False tmem41b
XM_026930873.2 mRNA downstream 143612 4066581 ~ 4077728 (+) True tmem41b
XM_026930853.2 mRNA downstream 156889 4079858 ~ 4128554 (+) True dennd5a
XM_026930858.2 mRNA downstream 208633 4131602 ~ 4137388 (+) True sinhcafl
TU207714 other upstream 254508 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 1834157 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 1852501 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2547853 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3170074 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 358275 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 733636 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 3199416 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3344915 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3679257 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile