RNA id: XM_034308459.1


Basic Information

Item Value
RNA id XM_034308459.1
length 1584
RNA type mRNA
GC content 0.59
exon number 5
gene id gfod2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 949766 ~ 957309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGGGCGTGGTAATGGGCGTGGTAATGGGCGTGGCGAAGGACATGGTCTGGTTCGTGCTGCGCATGCGCGAAGTGTCCTCGCTTGTTTCTGTGACCTGTTTGTGATGATCAGAAATCTCCCCGCTGTGTTACTGCgattaataaaacaacacagatatTACACTGGATTAAAGAAAAGCAAACAGTGAGTTGGTCTGGTCTGAGGAGGGAGGCGGCCCGGATGCTAGTCAGGATCCGACTGGGGAGATTTTATCACTTTAATCAAACAAAAGAAGATTTCTGTTTGAGGAAAAGATTTCCAAAAAGTAGTTTAGgattATCTCTTGTTtggaatttcagctttaaacaGGACGTGTGTAATGGCTGACTGAGTGTGAGTGCagcaggcgtgtgtgtgtgtgtgtgtgcgcgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtgtgctgagcaGAATGTTGCCGGGCGTGGGTGTGTTTGGAACGGGGCAGACCGTACGCTCCCTGGTGCCCTTGCTGCAGGAGGAAGGTTTTCCGGTTCAGGCCGTCTGGGGCCGGACGCAGGAGGAAGCAGAACGTCTGGCTAATGAGCTCAACATCCCCTTCTCTACCAGCCAATCAGACGACGTCCTGCTCAGACAGGAAGTCCACCTCGTGTGCATTCTGACGCCGCCGCCGCACACACGCCAGATCGCCGTGAAGGCACTGGGGATCGGAAAGAACGTGATCAGCGAGCAGGCTGCTACGCTAATAGACGCCTGTATGATGGTGACGGCGGCGCGGTATTACCCGCAGTTAATGAGCATCATGAACAACGCGCTGCGCTTCCTGCCCGCCTTCGTCCTGATGAAGAGGCTGCTCGCGGAGGGGTACTGCGGCACGCtgcagGTGTGTGAAGCGCGTGTGTACGGCGGCTCGTTGCTGAGTCAGTCGTACGGCTGGGCGTGGGAGGAGCTGATGGGGGGCGGCGGCCTGCACACGGTCGGTTCTTGCATCATCGACCTCCTGAGCTACCTGACGGGGGGGCGGGCCGTCCGCGTGCACGGAATGCTCAGGACCTTCGTGCGTCACGGTGGAACGGGCGGCGGGATTCGGTCCGTCACGGCCGACGACTACGCCTGCTTTCAGCTGCTCATGACGGGGGGCGTGGTCTGCAACGTGACGTTGAACTTTAACCTCCCGGGCGCCGACCTTCACGAGGTCATGCTGGTGGGATCGTCCGGGAGACTGGTGGCGAGAAGCACCGAGCTGTACGGCCAGCGCAACAGCACGAAGGGGGAGGAGCTTCTTTTGAGTGACAGCGGCTCAGGGGCGGGGCCTTCGGTCACGGGACTGAAAGCGATGGTGACTCAGCTCCGTCTGTCCTTCCAGGCGCAGGAGGACCGGCGATCGTGGGCGCGGCATCCCATCGCCATGGCGGCGACGTTCGAGGACGGGCTGTACGTTCAGACGGTGGTGGACGCCATCAAAAGGTCAAATCGCACCGGAGAGTGGGAGAGCGTGGACGTCAGAACCGGCGATGTAGATCCTAATCAGAACCATAGAACCGCTCCGAACTAA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA upstream 39450 909639 ~ 910317 (+) True G173854
TU205786 lncRNA upstream 127084 815913 ~ 822683 (+) False ccdc102a
TU205783 lncRNA upstream 129627 764340 ~ 820140 (+) False G173823
TU205782 lncRNA upstream 129627 798053 ~ 820140 (+) True G173823
TU205780 lncRNA upstream 159510 762204 ~ 790257 (+) True G173821
TU205830 lncRNA downstream 67519 1024487 ~ 1025616 (+) True G173865
TU205849 lncRNA downstream 177050 1134018 ~ 1134612 (+) True G173880
TU205864 lncRNA downstream 420236 1377204 ~ 1432962 (+) True G173893
TU206003 lncRNA downstream 661265 1618233 ~ 1618745 (+) True G174018
TU206008 lncRNA downstream 671876 1628844 ~ 1629199 (+) True G174023
XM_034308552.1 mRNA upstream 1463 936344 ~ 948304 (+) True cenpt
XM_026930496.2 mRNA upstream 19665 913040 ~ 930102 (+) False cog4
XM_034308549.1 mRNA upstream 19665 915869 ~ 930102 (+) True cog4
XM_034308551.1 mRNA upstream 41332 896147 ~ 908435 (+) True dnaaf1
XM_026930340.2 mRNA upstream 55319 852824 ~ 894448 (+) False dok4
XM_026930863.2 mRNA downstream 4401 961369 ~ 965388 (+) True LOC113536732
XM_034308732.1 mRNA downstream 9007 965975 ~ 976359 (+) True vrk3
XM_026930386.2 mRNA downstream 20275 977243 ~ 987383 (+) True acd
XM_034308729.1 mRNA downstream 31225 988193 ~ 999215 (+) True ogfod1
XM_034308730.1 mRNA downstream 31225 988193 ~ 997331 (+) False ogfod1
TU205778 other upstream 207057 742021 ~ 742710 (+) True G173819
TU205686 other upstream 379441 568813 ~ 570326 (+) True G173748
TU205870 other downstream 404814 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1102002 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1121109 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2690402 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 3324276 4281244 ~ 4297247 (+) False nadsyn1

Expression Profile