RNA id: XM_026930359.2


Basic Information

Item Value
RNA id XM_026930359.2
length 1354
RNA type mRNA
GC content 0.39
exon number 2
gene id fadd
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4647397 ~ 4651092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGCTCGCCTGAAATGAGGTGGAGCACTGAACCGGAAACTTCCCGCTCTCCACTTTCATTTTGGCAACCTGAAGACATTTTGGCCAGTCTACAAGCTTTGGACACTACCAAACAAGATAAACTTTCAAAATTGTTCTTTCtgagctttttaaaaacaacgAGTTTGCTGCTTTACGTCACTGTTTGAACCTTGGAGTCCACCTGCTTTTAAAACGGAAGCGGAAATGTACGGTGTGTGTCTGTAGGTAAGGAAGAGGAGTTATATTTTCATCTTAACTGCAGACAcacccacaaaaaaaacatggatagATTTAAAGTTATGCTGTTGGAAATATCCCAAAAGCTTGGCCATGACAATTTAGCGAAACTAAAATTTCTGTGTGGAAACATTAttgggaagaagaaaagcgaGGAGATCACCAGCGGCATTCATCTGTTTGATTGTCTGATAGAGAGAGCAGAGATCGGGCCTAATAACACGGAACCTTTACGGAAGCTTCTCGCTGACATTGGCCAACAAGCTTTACTGGAAATAATCGACAGCTATGAAGGACAACCGAGCGCCACCGATTTGCCGGATGAAGCGGAACTAGGAAAAATCAACTGTGCAACAGAAGTAATCGTTGAGCAGCTGGGAAGGAAGTGGCTTCAATATGGACGGAAACTGGGAATCACCGAGGCCAAGCTGGAAGGCATACAAGAGAAACACCCTCGCAACCTGGAAGAACAAGTGAGAGAACTGTTCAAAGAGTGGAAGAAGATACGCAAAGAGGAGGCCAAAGTGGACGAGCTGATCAGGGCACTCCGTGCCTGCGACCTGAACTACACGGCTGATGTTGTGGAAAGAAAACTCCAGAATGCTAATATGTCATGAAAATTGAACATGTACGTGTGCTAGCGATAATTTGTCTTGCAGTTCTTTGTGCCAAATATAATGCTGAAAGCACTTTGACCTTAAATTTACATTTGAGAcgctttatatttttctttgggATTCCTTTCTTGAAAACTTCACTCAGTCTTAAAGCTTTGCTCAGGTGGACAGGAATATTCATGTGTTGTGCTGGTTAGTAAACTGTGAATCCATgctgtttacaaaaaaatggtacttttatgatttttttaaaccactggAATATTATAAATTAGGCTGAGATTCAAATGtagtatataattataatataataagacaCTCAAGAAAAGTAATTATCACTAAATGTTATAGCCTCACTCTGTgacattttttacttttgattGGAAATTGATTAGAAAATGACAGCATTGTTCCAAAAGAATTGAATTTCTTGTTATGTATCACAACTGGATGTAAATAAAGGGAATAATTTTATTAA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process

KEGG:

id description
K02373 FADD; FAS-associated death domain protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208224 lncRNA upstream 2199 4644585 ~ 4645198 (+) False ano1a
TU208223 lncRNA upstream 2379 4644585 ~ 4645018 (+) False ano1a
XR_004579122.1 lncRNA upstream 63566 4578357 ~ 4583831 (+) True LOC117598446
TU208205 lncRNA upstream 72476 4574451 ~ 4574921 (+) True G175939
TU208168 lncRNA upstream 137696 4509416 ~ 4509701 (+) True G175905
TU208270 lncRNA downstream 3875 4654967 ~ 4665352 (+) True G175982
TU208281 lncRNA downstream 43827 4694919 ~ 4729047 (+) True G175988
TU208284 lncRNA downstream 86159 4737251 ~ 4739666 (+) True G175991
TU208292 lncRNA downstream 136650 4787742 ~ 4860943 (+) True G175999
TU208304 lncRNA downstream 162420 4813512 ~ 4838371 (+) True G176008
XM_026930514.2 mRNA upstream 2374 4613406 ~ 4645023 (+) True ano1a
XM_026930325.2 mRNA upstream 156022 4486552 ~ 4491375 (+) True ccnd1
XM_034308571.1 mRNA upstream 324708 4302271 ~ 4322689 (+) True tpcn2
XM_034308570.1 mRNA upstream 324708 4302272 ~ 4322689 (+) False tpcn2
XM_026930415.2 mRNA upstream 324708 4302273 ~ 4322689 (+) False tpcn2
XM_026930608.2 mRNA downstream 41441 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA downstream 41441 4692533 ~ 4725750 (+) False csnk1g1
XM_026930739.2 mRNA downstream 79407 4730499 ~ 4736404 (+) True rps17
XM_026930338.2 mRNA downstream 382147 5033239 ~ 5035405 (+) True senp8
XM_026930743.2 mRNA downstream 656929 5308021 ~ 5310159 (+) True rxfp3.3a2
XR_004579071.1 other upstream 350150 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 989121 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2568770 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2587114 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 3282466 1361782 ~ 1364931 (+) True G173898
TU208265 other downstream 5513 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2471293 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 2616792 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2951134 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 3592330 8243422 ~ 8243494 (+) False trnar-ucg_6

Expression Profile