RNA id: XM_026930379.2


Basic Information

Item Value
RNA id XM_026930379.2
length 4175
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC113536465
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9837999 ~ 9864785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTTGCACCTGCACTGTACAGATgttccacactcacacactcacgcacacacattcagatacacaacacatacactgaAAGACTTCAGCcataaacccacacacactcagatggGAAGTTTGACTCTGGAGCCATGAGCGTGGTGAGAGAAACAACATCACTGACCCAACCACTGACATCCTCCAAACGGCACAAGAGTGTGAGAAAGAGCTCCAGGAAGATCTACACACCTTACCAGGACAATCCAGTTTCCTCTGATGATGAAGATAAGGATGCAGAGCGGGTGGACAGTAATGATCCTGAGGAAATGTTCCAGAATATTCAGTACCAGAAGGAAATCATTGCCAACATCCGAACACGACCCTGGCCAATGAGACGCAAGCTCAAAGTCTTAAAGCAGGCCAGGGAGATTGTGCTGAAGTATGAAGGTAGGCTGACCAGGACACGAGGATACCAGGCTGCAGGCGCAGacCTGTTAAAGAAGATTTCAAGAGTCCTCTACAACATCCTTGTTTTATTCATCCCATGGGAAATGAGGATTAAAAAGATTGAAAGTCACTTTGGATCCGGTGTGGCTTCATACTTTATTTTCCTACGATGGTTATTTGGGATTAACATCGTCCTCACAATTATGACTGGAGCTTTTATTGTCCTTCCTGAGCTCCTCGCTGGTGCTCCTTTTGGCACCACACGCAGCAAAACCATCCCTAAAGACCAAATCGCCTCAGCTCAGGACCTTGACACCATCTGGTCACTTGGGGGTTACCTGCAGTATTCCGTGCTTTTCTATGGCTATTACGGAAACGTGCGTAAGATTGGCAGCGCCGGTTACCGCCTGCCCCTGGCCTACTTTCTTGTTGGGATGGCTGTTTTTGCCTACAGTTTCATCACTCTCTTAAGAAAAATGGCGAAGAACTCACGGTTAAGTCTATCCAGCGCTTCCAGTGAGAACTACACATTCTGTTGGCGAATCTTCTGTGCCTGGGACTACTTGATCGGTAATCCTGAGGCTGCTGAGAGCAAAGGAGCAGCAATAGTCAATAACATCAGGGAGGCCATTGTGGAAGagcaagagaagaagaaagaaaccaGCCTAGCGGTTTTGATCAGCTTGCGGATTCTAGCCAACATCCTGGTCCTGCTGTCACTGGCTGGCAGCATCTACATCATCTACTTTGTTGTGGATCGCTCGCAGAAGCTGGAGCAGCAGAAAGCAGAGCTAACTCTGTGGGAAAAGAATGAGGTGAGTGTAGTGGTCTCCCTCATTACTATGATCGCTCCGTCTGCTTTTGAGCTGGTGGCCCAGTTGGAGATGTACCATCCAAGAACCAGCCTTCGTTTCCAACTTGCCAGGGTGCTGGTGTTGTATCTTGGAAACCTCTATAGTCTGATAATCGCCCTGTTGGACAAAGTGAATAGCATGAGCTCTGAAATTCCAGGGAACTGGTCTGACTCCACGTCTTACCTGGCCACCATTTCCCAGCCTGCAGAGACCAACGTGTCTACCATTGTCCCAGAGATCACTGAGGGAAGGAATGGTACTTTCACCATGGCTGTAATAGACCTAAACCGTACCAACCTCAGTGTCAAGCACACTGTTGTGTCTGGACCGTCAGCACCAGTCCTAACTGGAATGAACCAGTCCATACTATATGAATACAATGGCAAAACCCAGCAGGATCAGTGCTGGGAGACGTATGTTGGGCAGGAAATGTTGAAGCTCTCGATCATTGACATGATCTTCACCGTGGCTAGCATTTTGTTGATCGATTTTATCCGGGGCCTGGTGGTTCGATACCTGAGcgactgctgctgctgggatCTGGAGAGCAAATTTCCTGAATATGGTGAATTCAAGATAGCTGAAAATGTCCTACATCTAATATACAACCAGGGAATGATATGGATGGGGGCTTTCTTCTCACCCTGCCTGCCTGCCTTCAATGTGCTGAAGCTAATCGGACTCATGTACCTGAGAAGCTGGGCTGTGCTCACCTGTAATGTTCCTCATCAACAGGTCTTCCGGGCTTCCAGATCTAATAATTTCTACCTGGCCATGCTCCTCTTCATGCTCTTCCTCTGCATGCTACCAACCATCTTTGCGATTGTGAGGTACAGGCCATCACAGCACTGCGGACCTTTTAGTGGTCAAGAGAAGATTTATGACATCATCTCCGAGACAATAGACAAGGACTTTCCTGCGTGGTTTAGTAAAGTGATGAGTTATGTCACAAGTCCTGTGGTGGTTCTGCCAGCTCTCTTGCTCCTCTTCATGCTGATCTACTACCTGCAGTCCATCGCCAGATCTCTCAAATTCACCAACAACCAGCTGAGAATGCAGCTTCAGACCGAACGCACAGAAGACAAGAAGAAAGTGTTTCAGTTGGCCGCAGCACGTCTCCAGCCACCCGAGGGTGGTGAGCAAAAACCCGAGCAGGAGAGTGACATCACTAGCATGGAGTCACCAGCCCGGTCTGCTTCCCCTCCACGTCGCAACGGCAGCGTCAACAAAATCGTTTCACCTGGCCGTCGCAGCAACAGCATCCGCACGATTGCCCAGTCAGCCTCTCGGCCTGATGACAGAAGTCCCTCCATCCTTGTGAGACCCAAGCCTAGCAGTGCTTACAGAGTATTCGGCAGCCCCTCCATTCCCCAGAGGGAGATTCACAGGGTGGAATACATCCCCATCAGGCATCCAGCCTATCCAGGCCGCTCCAAATCATACCATCACATGGCCTACAATCCTTCTGTGCGCTTCTCTGAGAGTGTCCACTCAGACCCGGTGTTCAGGAAGAGCCTCAGGCCCATGCACCCAGAGCCTGGTATTGTCACAGCACAGAGCTACCTGGGCCGGCGTGCTCACACCACCCGGTACGTCATCCTAAACGAGCACGAACCACGCAAGAAGATTGTGCGTTCCACCATGCGTCTGCCAAGGCACTACCGCGTAGTGGACGAGCCAGCCGAGATCGTGGAGCTTTACCCCCGCAATGTGAAGTGCTACATTCCCCGGAGTCAGCAACCCCACCTcagtgaagaagaggaagaagatgaaGCCAACGACGGTGGAAAGAGAGGGTCTTTAGGGCACTCACACCGGCCGAGGTCACTCTCCGATCTCCATCAGAGATCACCGGCACGCTTTTACATTGGCGAAACTCTGGAGAGCCGCCTAGCACGGAGAGTGTatggagaggaagaagaggaagattaTCTAGAGTGGGAAGAGGAAGGCCCTCGTACCCGCTCCCGGACAAGTATTAAGGTCACGGAAACACCACATAGGCATGGGGAACCTCATGTCAAACCCAAGAACAAACGCAAGGGGGAGCCGTCACTGACCGAGTCAGATTCGGCCTCACTAGAGTCCAGCAGTGACCAGcagaacagcagcactgaccagtacatCCAAGTCATCCACAACAAAGAGAAATACCTAAAACACAGCACTAAGATGACTAAAAAGAAGACCAAAACCAGCGCTGAACTGAACACAACTGGATCAAAAGATCTAGTGTGCTCAAATGTTTGACTAAATTTACTGCTTATATAATAACAACACTGAAGGTTCCAGTAGTTATGTTGCACATATGCTGTCTTATCATGTTTTAAAGCACATATTTTAGGCAAAACTACAACAACCAAAATGTAGGACCTACATTTTTTGCAAAAGTAAAATggaatatattgtgtatatgatATTATAAAGCGATCTATATCAAGacctatatacagtatgtaatataAAGATTATTTAGAATTGAATCTGCCAATggcataaataatataatagacACAAGTTATATTCCAGAAAATTTTCAGATCACACataatctttaatttttttattgagaTATACACGGTGGATAAAGGTAAgtgttgttaattaatattatagaaGAACTACATACTTTGTGAACTAGACAGAATGAAAAACTTCATCTGAATTTGAGAATTATACACACCTATTATACACTTATTTACAACACTTTGGAACATGCATTTCTGGATTACATAGCATGGTATTCAAGTAGGGACAACTTTTTAGCCACATTTATTGAGCatgttaagcattttttttccacatcaccTCTAATGGGAAACACATTTTGGACAAATGTTGTATGGCATCTAGATATTTTTTCATCTATGACAAATATATTGCTTTAAGCAA

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211840 lncRNA downstream 63590 9770818 ~ 9774409 (-) True G179021
TU211823 lncRNA downstream 83620 9739531 ~ 9754379 (-) True G179004
TU211776 lncRNA downstream 210816 9625284 ~ 9627183 (-) True G178961
TU211728 lncRNA downstream 394072 9440919 ~ 9443927 (-) True G178914
TU211709 lncRNA downstream 430781 9387507 ~ 9407218 (-) False LOC113536412
TU212223 lncRNA upstream 247243 10112028 ~ 10112242 (-) True G179372
TU212321 lncRNA upstream 622080 10486865 ~ 10487943 (-) False sh3gl3a
TU212324 lncRNA upstream 646836 10511621 ~ 10512024 (-) True G179466
TU212327 lncRNA upstream 649911 10514696 ~ 10515201 (-) True G179469
TU212342 lncRNA upstream 696618 10561403 ~ 10563452 (-) True G179478
XM_026930358.2 mRNA downstream 2039 9827948 ~ 9835960 (-) True stard5
XM_026930355.2 mRNA downstream 69899 9758652 ~ 9768100 (-) True mesd
XM_026930299.2 mRNA downstream 430806 9387491 ~ 9407193 (-) False LOC113536412
XM_026930847.2 mRNA upstream 203732 10068517 ~ 10073310 (-) True mex3b
XM_034308813.1 mRNA upstream 249298 10114083 ~ 10250461 (-) True efl1
XM_026930679.2 mRNA upstream 249828 10114613 ~ 10251340 (-) False efl1
XM_026930678.2 mRNA upstream 249828 10114613 ~ 10251217 (-) False efl1
XM_026930622.2 mRNA upstream 393522 10258307 ~ 10452771 (-) True adamtsl3
TU211855 other downstream 22774 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 314669 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 947301 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1590237 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1591224 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 1379190 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1544307 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 1631289 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2852576 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 3371618 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile