RNA id: XM_026930386.2


Basic Information

Item Value
RNA id XM_026930386.2
length 1933
RNA type mRNA
GC content 0.53
exon number 13
gene id acd
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 977243 ~ 987383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacactgaaacaccGGAAATGTAACTCACGAGGGCAGCAGAGACGCGCGGATAGTTCACATCCAACCCGGAACTTAAAACTCTTAGCCGTGTTTCCACACGGAGCGAAAACAAGAGCGCAGCGTTCAACTAAACCGCCAAAACAGCTGTCGGGTTTTGCGCGAAAACTGACGTTATATGAGCAAGAAATGAGACTAGCAATAAACTAAACCGTTGTTGAACATGTGATGGAGATTACACGTTAAATACACGATTAGGAAAGGAGTTTTTAAACCTGTTTAGGCTGTAATGCGGCGCTACAGGAATGAAGCGGAACCGGAACCTTGGATCGAGCAGCTGATTGAAAACTACGGCGAAGAACAACGAGACACCAGCGTCAGAGCTCATGTGGTCGGGgtgagtgACTTGACCGAGTCTCAGCGCACGGATGAGAGTGATGCCTGCATGCTCTTCCTGTCTGATGGGACCGTGTTCATCCCCGCGGTGCTCAGCGCCGCCGCCTGGGAGCACATGCAGGAgttagAGGAGAGAGACACGTTTTCAGGTCTGGACAACACGACGGTGTCGGTGCGGAAATTCCAACTGAACTTCCACATGGACCCGGAGCTGACGTCCTGTCAGTTTTATCTCACTGTTAATCAGATCGTCACTGTGGGTCGAGTCAGTCGGCATCACCGCCCCCCGAGCTGCACGATGCTGCCATCAGTCAGGCAACAAATCCTGAAGACGTGGCGATCCCTGATGAAGGAGAGTTCAGTCACTTCTATGAACTCACAGTCAGGATTCCCACTTTCCTGCCTGATGGGGGCGTGGCACAATGACATCATCATGGACCTCCTGAATGATGCAATCAAGAAAATATCCGCGCCCACCGTGGGTCACCTGAGGACGGCCACGCCCACTCGCTGGCACCTAGAGAGACTTCGCTGCAGGAGTGAGGAGTGTTTCAGCACTCCTGTGTCTCATCTCCTCATCCCACAGGAGCAGAGGGAGATGTTGACAGCTGATCCCGGTGTGTCGAGTTTGAGCGAAACGCCGAGCGGCCTGGTGCCTCCTCACGTAGCTGAAACGACGAAGCGGCCAATCACGACGCAGGATCGGGACGGAGACTCGCCCGCCGCGGCTTCCGATAGGCCGGAAGATGGGCATCAGCTCACCCTGAACAACACCAGACCGGAGGTCTGgtgtgatggaggaggaggaggaggaggaggaggaggaggaggagcgagCGAGGAACGAGAGAGCCCCTGGGATATGTTCTGTCCTGCTGCTGACCTGCTCGcaactccatcatcatcatcatcttcagagaGCAGTCTGGAGCCGCTCTCGCAGCAGGACAGCCGCTCGCTGCTCACCGTTCCACCGTTTCAGAGACCGCACCCGTCTCCACGTAGCCCCGCCCACCCGAGTGACCCGACAACCGCGGACCTGCGTCAGGATCCGCAAACACCGAGTCCCTTAACATCGACCGAACACACTGCAGCCGTGTGTGTGGAAGAACAATCCCCAACAGACACTCCCCAAAAAATACCACACCCCGTGTCACACACCCCACCTGCCAAAAAGAGCCGGAGAGTCCATTCAGACGGCAGCAGTTTCTCGTACACGTATGAACCTTGTCCGAACGTCGCCTCGGCTCTCAGCCAGTGCAAggtccCAGAGCGGCTGGTGCAGTGGGCGGTGGCGTACCTGGGGACTCCTCAGCGCGCGCTTATTGTCAGCAATGGAGTGGAGCTGAAAAAGGTTGcaatgttgaaataaatcttgTTCATATGTTCTATATGTTCATTATAAACAGTGTTATTTGTTGTTGTAATAACcttattaaatgattttttaaaattattttatgtatcttattatgaataatattatGAATACTTGTCCTTAAATGGAGtttgattaaaagaaaatcatcaaaataata

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA upstream 66926 909639 ~ 910317 (+) True G173854
TU205786 lncRNA upstream 154560 815913 ~ 822683 (+) False ccdc102a
TU205783 lncRNA upstream 157103 764340 ~ 820140 (+) False G173823
TU205782 lncRNA upstream 157103 798053 ~ 820140 (+) True G173823
TU205780 lncRNA upstream 186986 762204 ~ 790257 (+) True G173821
TU205830 lncRNA downstream 37104 1024487 ~ 1025616 (+) True G173865
TU205849 lncRNA downstream 146635 1134018 ~ 1134612 (+) True G173880
TU205864 lncRNA downstream 389821 1377204 ~ 1432962 (+) True G173893
TU206003 lncRNA downstream 630850 1618233 ~ 1618745 (+) True G174018
TU206008 lncRNA downstream 641461 1628844 ~ 1629199 (+) True G174023
XM_034308732.1 mRNA upstream 884 965975 ~ 976359 (+) True vrk3
XM_026930863.2 mRNA upstream 11855 961369 ~ 965388 (+) True LOC113536732
XM_026930352.2 mRNA upstream 19934 949768 ~ 957309 (+) True gfod2
XM_034308458.1 mRNA upstream 20275 949767 ~ 956968 (+) False gfod2
XM_034308729.1 mRNA downstream 810 988193 ~ 999215 (+) True ogfod1
XM_034308730.1 mRNA downstream 810 988193 ~ 997331 (+) False ogfod1
XM_034308883.1 mRNA downstream 19422 1006805 ~ 1024473 (+) True LOC113536571
XM_026930713.2 mRNA downstream 47177 1034560 ~ 1043087 (+) True LOC113536635
XM_026930285.2 mRNA downstream 61884 1049267 ~ 1058585 (+) True fbxo22
TU205778 other upstream 234533 742021 ~ 742710 (+) True G173819
TU205686 other upstream 406917 568813 ~ 570326 (+) True G173748
TU205870 other downstream 374399 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1071587 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1090694 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2659987 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 3293861 4281244 ~ 4297247 (+) False nadsyn1

Expression Profile