Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930387.2 |
| length | 813 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | map1lc3c |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 7356919 ~ 7361930 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| id | description |
|---|---|
| K10435 | MAP1LC; microtubule-associated protein 1 light chain |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU209859 | lncRNA | upstream | 12397 | 7294000 ~ 7344522 (+) | True | G177271 |
| TU209892 | lncRNA | upstream | 13649 | 7338425 ~ 7343270 (+) | True | G177302 |
| TU209862 | lncRNA | upstream | 77152 | 7279563 ~ 7279767 (+) | True | G177274 |
| TU209856 | lncRNA | upstream | 84381 | 7271515 ~ 7272538 (+) | True | G177268 |
| TU209804 | lncRNA | upstream | 201575 | 7155121 ~ 7155344 (+) | True | G177233 |
| TU210106 | lncRNA | downstream | 48155 | 7410085 ~ 7410291 (+) | True | G177487 |
| TU210116 | lncRNA | downstream | 72207 | 7434137 ~ 7436825 (+) | True | G177497 |
| TU210117 | lncRNA | downstream | 75229 | 7437159 ~ 7437427 (+) | True | G177498 |
| TU210125 | lncRNA | downstream | 79306 | 7441236 ~ 7441720 (+) | True | G177506 |
| XR_004579110.1 | lncRNA | downstream | 81087 | 7443017 ~ 7445287 (+) | True | LOC117598442 |
| XM_026930801.2 | mRNA | upstream | 67402 | 7282097 ~ 7289517 (+) | True | opn6a |
| XM_026930879.2 | mRNA | upstream | 77537 | 7272843 ~ 7279382 (+) | True | eif4a3 |
| XM_026930353.2 | mRNA | upstream | 85648 | 7267831 ~ 7271271 (+) | True | rpl37a |
| XM_026930725.2 | mRNA | upstream | 90590 | 7253361 ~ 7266329 (+) | True | pfklb |
| XM_026930840.2 | mRNA | upstream | 109744 | 7239467 ~ 7247175 (+) | True | orc2 |
| XM_026930576.2 | mRNA | downstream | 122313 | 7484243 ~ 7492243 (+) | True | tomm20b |
| XM_026930574.2 | mRNA | downstream | 139148 | 7501078 ~ 7513789 (+) | True | tbce |
| XM_026930639.2 | mRNA | downstream | 191043 | 7552973 ~ 7561495 (+) | True | gpr137bb |
| XM_026930291.2 | mRNA | downstream | 419731 | 7781661 ~ 7794628 (+) | True | si:ch211-106j24.1 |
| XM_026930745.2 | mRNA | downstream | 482743 | 7844673 ~ 7925739 (+) | True | LOC113536658 |
| TU209855 | other | upstream | 85599 | 7267884 ~ 7271320 (+) | False | rpl37a |
| XR_003403680.2 | other | upstream | 225413 | 7122385 ~ 7131506 (+) | False | LOC113536390 |
| TU208265 | other | upstream | 2695783 | 4656605 ~ 4661136 (+) | True | G175977 |
| XR_004579071.1 | other | upstream | 3059672 | 4281244 ~ 4297247 (+) | False | nadsyn1 |
| TU207714 | other | upstream | 3698643 | 3647370 ~ 3658276 (+) | False | btbd10b |
| trnae-cuc_24 | other | downstream | 240296 | 7602226 ~ 7602297 (+) | True | trnae-cuc_24 |
| trnar-ucg_6 | other | downstream | 881492 | 8243422 ~ 8243494 (+) | False | trnar-ucg_6 |
| trnar-acg_6 | other | downstream | 883022 | 8244952 ~ 8245024 (+) | True | trnar-acg_6 |
| trnar-ucg_8 | other | downstream | 886086 | 8248016 ~ 8248088 (+) | True | trnar-ucg_8 |
| TU210703 | other | downstream | 891491 | 8253421 ~ 8270749 (+) | True | LOC113536578 |
