RNA id: XM_026930390.2


Basic Information

Item Value
RNA id XM_026930390.2
length 3412
RNA type mRNA
GC content 0.41
exon number 14
gene id cdhr5a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5318352 ~ 5325458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTATGTGAAGAAGTACCAGCTGGTGCCACGGTCCCCTCTAGTCCTCCATACTTATTTGTGTTCATCACATATTGGGACATGGAAAGGAAATATAAGCTAAAATCCCTAAACACTGCCTTCAGCTGCATGATAGCGTTCCTCCTCCACAAATTCTGCCTTGCTGAAAAAATTTGTTCAGTTCCCTCAGAGCCTGTGACTATTAAAGAGAACAACACAATCAATGCCGTTGTTGTCCATATtaacacaacaacaaagaacGTCACACTGACTCTCACCGAGAACCCAGACAATGCTTTTGACCTGAGGGGACTGGATCTGATCGTGAAGAAACGCCTGGACTTTGAAacTCTGTTAAATCCTGAGGAGCTCACAGTTCAAATCCGCTGCAATAAAACAGGATCCAGAAGTATCACTTTGACAGTGCTTGTTCAAGTCGAGAACATCAATGACAACCCTCCTTCATTTGCCCAGAGTAAATACATTCTAGATGTTAATGAGCTCACACCTGTTAACACCAGCGTGGCCCAGATTGAAGCAAAAGATGATGATTCAGGAGTTTTATATTACGCCTTGGAACCAACTCTGAACCCATATTTCCGACTCGAGAACATGTACAAGCCAAATATTCTCGTCAACAAGACTTTGGATTATGATGTCGTCCAGCAGGTGACATTGACCTTATATGTGCAGgataCTCCACCATTGTCACTGCCAGGCCAAATCTCTTTCACAGCCACCACGACGATTATAATCAACATAAAAGACATTGACAACCGTCCACCCTGGTTCCAGCCGTGCACGAGAATAACTTTTGGTACCGCCAAAATCTGCCTGAGCGTTGGGTATAAGGGCAGAGTCAACTTAACAGAAAGACAGGAAGGACCACTACAGTTACATCCAGGGCCGATCTACGCaagagatggagacagaagCAGAAATGAAGAGATTAGCTATAAAATTGTTAGAgGAAATGAAGACAACATATTTCAAATAGATGAAATCACGGGAAACATAACCATGCTAAAACCAGCGGACATTGCAGGCCCAATATCTCTCACAGTTTTGGCTTCCCAGGTGTCAAACCGTGACCAGTTTGCTTCCACTTCAGTCAACATCGAGGTGATGAAAAAGAGCAGGAACCCACCAAAATTCGAGAGGGAACGCTATGAGGCATATGTTTACAGCAACTCAGGCCCTGAGAACATGGTGCTCAGGGACAGGACTTCAAATAGGCCCTTCAGAGTCAGAGCCAGGGATGATGATTTTGCAAATGGAATAAATCCTGACATAAGATACGAAGTACAGTACAGCAGTTACGTCAACATAACCACAGATGGATTTGTGCTTCTGAAAAAACCTGTTCGGACCGACTCGTTTGCTTTGCAAGTTCGGGCTGTTGATGTGTCAACTGGTGAGTCGGGAACGGCGGCTCTGTCCGTGCTTGTCCTACCACCCGTGGGAGTGCAGTCGCCCTCAGAGGGATACCGTGCTGGAGATATGGCCTTGCTGGGCTTCGTAATGGCTGCCTTGCTGGTTCTCTGCCTCATCGTGATTGGCTATCTCATCTCCCGTCTGAAGAAAAGGAACCCAGACACACTCAAGTTATCAGAGCATACTCAACCCACTGATGGGTTAAGGCCAAGAGACAGCATGCAGTTCACCAATGATGGCTTCCTGAATGAAGCAGACATGGGCAGGTTGGCAACGAGGAGGCCAGATAAGAGAgacaggaagcaggaagtgtCTCCGAAATGGAGAGTGAGAGTGACACCACGTGAGAGGCAAGGACACTGCAATTCCTGTGGCACGCGAGTTCGCTCGAACCATGTGCACCGCAGCAGCCCAGCTCTCCACCCCAAAGCCCAAGGAGCTAAAAACCAAGTCAGATCCATCCTAActaaagagagaaggaaggacaGACAGAAGACGGTGTGGTTTAAAGAGAGTGAGGATTCCTCAGACATCGAAGTGGAGATCATTCCTGATGACATAGGGCTTAAacatgaggaagaggatgaaaaCTCGTCTTCTCTGGCTCTAAAAGCCAGTGATATGGAATTGGGTGAGTTGACTATGATGAACATCCAGGACTTTGACAAGCAGCAGGAAAATGTTTCTGACCACCAAGAGCCACCGGATCCAGACAAAACAGTCCAGTGAATGCCAAGAGGGCTTGGAATCAGTAAACCACATCCCAATAAGACTTAAACCAGTCATTCCTAAGCTGGTATctgggtgattccatgatttgGGTGCCATTTATTTCCCACTGATATTATCCCACTGTCCGAGCCCACTATAGCTACACTTTCatcttaaaatatatattagaatatttcaaaaaacattattatttttattaatgtgtgaatACATTTAACATCTCTTGCGTGAAAAATCCTTTTCCACAAGCCTTTTCCATGCGCCGTCCATTATAGGTtacacattttagttttttctcTCAATTCTGTTACTTgaaaacactctgaacacattcacccctgtgaaatatttggaatattccacaagtaaTATATTCAGGTTGCATAATATGAATTTCCTGGGGATcatggaaagaagaaaagtgcattctctcattcttttttctttacttttaattatGTTGTGATACTGACTGACAAagtcactttgaaagtataaCCCTCTTACCCAAATTACacactgaaagtaaattattatgtaattattagaaatcattcaaatgttatGCTAACCATATTTTGCGTATTTGTGCTAATCCTGTATTCAACCCTGTTGCTTATTTACGAGCAAAATGAGCCATTGACAGCtaagaaaccttgtaaaaatgaCACTGTTGCCTGAGATGGGCTACCACATTTTATATGGTcaaatgttttcttagatttaatgttgaaaaatgacaaaaatttaAGGGCTACATGGCACCACAATCGTGGAATCACCCAAACGTATTCAAGCATTTCTTAATTATGATGAGGTGCAATGCCTTACAAATCTAATTCACTGGTGTCCTCATATGGCAGGGTACTGAGAATCTTTTATCTGtgataaaaatgctgaaaaaatggCCATAATTCACATCCTGACTACAGCTGTAACATGTCATTTAGAAACATGAAAGactaatgtgcaaaaaaaaatagttttgcaGCTATAACAAAAATCATCATTTCTGTTTTGGAGCATTATAACTGCACTAAACATAAGATTTGCACTAAGCACTAATTATGCACTAGAGAATAACTTAATggttgtatttatattttttctgtctaGTATAATTTTTTATTGCTGTGAATAACATTTTGTATACACGAATACACATAAAGACTCtaagaatattttatataaatgtgaaaCTGTTATTGTGGAagtgcaaaaatgaaaaataaagcaagTGAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 205084 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 471211 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 477659 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 581936 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 685567 4630348 ~ 4632785 (-) True G175967
TU208989 lncRNA upstream 306368 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 757370 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 846740 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 858877 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 935339 6260797 ~ 6261240 (-) True G176855
XM_026930601.2 mRNA downstream 16001 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA downstream 16002 5229326 ~ 5302350 (-) False LOC113536575
XM_026930897.2 mRNA downstream 98113 5199143 ~ 5220239 (-) True chrna7a
XM_034308425.1 mRNA downstream 121535 5157861 ~ 5196817 (-) True trip4
XM_026930779.2 mRNA downstream 184802 5081652 ~ 5133550 (-) True znf609b
XM_034308478.1 mRNA upstream 34960 5360418 ~ 5366235 (-) True sirt3
XM_026930910.2 mRNA upstream 82138 5407596 ~ 5418681 (-) True LOC113536772
XM_034308710.1 mRNA upstream 82138 5407596 ~ 5415705 (-) False LOC113536772
XM_026930560.2 mRNA upstream 94538 5419996 ~ 5446722 (-) False nqo1
XM_034308721.1 mRNA upstream 94538 5419996 ~ 5446719 (-) False nqo1
trnai-uau_2 other downstream 4098 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 27758 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 121534 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 127830 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 237457 5079817 ~ 5080895 (-) True G176307
TU209010 other upstream 371000 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 371000 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2155991 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2254976 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2254976 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile