RNA id: XM_026930411.2


Basic Information

Item Value
RNA id XM_026930411.2
length 8447
RNA type mRNA
GC content 0.51
exon number 35
gene id lrrk1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8807587 ~ 8924385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGGCTTAGCAGCAACACCAGGAAGTGAAGCAGAAGTGAATCCGCGTGCAGGAGCTGAATTGCATTTCACAACACAGACGTTTAGGACATATCCGAGCTTCCACAGTGTCTAACTCTGTGTCGAGTTTGTTTAAAGGCATGTCCATGTGAAATGTCGtgaagGAGTAAATAATAGGGCTTTGTGGGGGACTTGTGATGGCATAGTTGGACTGAGACTCCTGCATTAGTTCTGTAACATGTACTGGAATGTTGGAGCCGCCGAAGACTCTGAAGACCAGCCTGCCTGCTGCGATGCCGAGCAAGATGGCGGTGCAGAAATGGGAGCCAAGCAGTCGGCGGCAGGGAGCGCTGTCTTGTCCCAGTCGCCCACCCTAGAAAACATCCGTGAGGCTTACGGGCAAGGTGAGGAGCGCAAGGCGCACGAGCTGATCCGGCTTGCCTGCCAGGAGAACGGCGGAGGACGAGCAGACATGCTAGAGCTCCTGTGTGCTGCCAGTCAGCATGGTGACGTGGAGAGTGTTCAGTTCCTGTTGAAGAATGCTCGGGTCCAATTTCCTCAGGAACCCAGTGAAGGGAATCCGGCTATCTTGGCTGCGCATTACGGCCATCACTCAGTGGTTCAAGAGCTCTTGGACTCCATTCCATCTCCATGTATCCGTAAAGATCTTTTGAACTGGATGCTGGCGACGGCGTGTCAGCAGGGTCATTTAGAGGTGGTGAAGCTGCTGGTTCTCAATTACCAGGCCGATGCAGAAGACTGCGCCCTACATAGTGACGAGTTTGCAGTTATCACTGGCCTGCCGCTGTATGCTGCAGCCAGGGCAGGAAATAAGGCGATTGCTACGTTTTTGCTGGAGAATGGAGCCTGCTTCTCTTCGTACACGTTGATGGACCACAGCAAGTTCACGCAGGAGCTGCTGAGAGAGCGCCTGGTGGAGGACAAAGACACATGCGATGATGGGAGAGTGCAGCAACCTGTGAGTGTGCAGTGGTCAGGGTTAAAGCTGCCATGGTTGGAGCTGGACTGGTTCCTGGATGTTTCCTCCAGGATCACAGTGCTGGATGTGTCACACAACGGCCTGAGCTCTCTGCCCTCAGTGGTGCCGTGGGGCCTCATAAACCTGCACACACTCAACCTCTCACACAACAAACTCAAAGAGCTGCACACACCCCAATCCTCTCAGGAAATCATCTGCATCAGATTACGCCAGGTCAATCTGTGTGAGAACGACTTGGAGAGTCTCCCGGTTGGCTTGCTGCATCTCAGCCAGATCCAGAGACTCTTTGCAGCCAAGAACAAACTCACCATCCTTTTCAACATCCCtaatgGCACTAACTGGATTGGGCTGCGCAGGCTTCAGGAGCTGGACGTGTCTGATAACTACCTGATTGATCTCCCGTTCCGTGTACTGCACTGCTTCAAGTCCCTCAACAGCCTCAATATCAGCAAGAACAGGCTAAGCCGCTTCCCAGACCCCTGGGCCTGTCCTCTGAAAATTTGCAAAGCTGCATCCAACCAGATCCAGAGTCTCCCTGACACAATCTCTATCTTCTGGAGGACGCACTTGAAGGAGGTGGACTTCTCAGAGAACGCCCTCAAGGAGCTGCCCTCCTACATATTTGAGCTCGAGGCCATTGTGTCCCTGAAGCTATGTGGGAATCAGATTACCACTCTGCCGGCTCCAAACAAATGGAAATGCTCTCAGCTCCGAACCTTAGACCTGTCCAGAAACCAGCTGGGGAAGCCCGTCAGGACGGAGGAGAACACCAAGACCAGGAGGCTCCCCTTCTTAACCACGTGGCATCGCAGAGACCCAGAACCAGCTTGTCCCGTCCAGTTTCCCGAAATCCTGCGGGATTCACTGGAAGTTCTCTTCCTCAACGACAACCAGCTGGAGTGTGTGCCGTCTGTGTGCACCCTTAAAACCCTGTCCGAGCTCTATCTGTCCAATAATCCAGGCATCCAGGAACTCCCAGCTGAACTGGGCCAGCTCTCGAACCTCTGGCAGCTGGACATAGAAGACCTAAACATCAGCAATGTCCCCGCGGATGTCTGCCGCGATGgtccGGCGGCTGTGTTGGCATTCCTGCGTGCTGAGCTGCGCTGTGCCGAGGCCTGCAGGTTGATGAAGCTGATGTTTGTTGGGCCGCCCCGTCAGGGGAAGAGTACTCTACTGGAGGCCCTTCAGACAGGAAGAAACTCGCCATTCTCTCCATCTGATCGCAGCATCCGCACCTCATCCTGGCTCCTAGAGAGACCCAGTGGAGTCAAAAATAACGTCGAATCTGTGTCCTTTAACGTGTGGGACATCGGAGGTCCGGCCAGCATGTCCACTGTGAACCAGTGTTTCTTCACGGATAAAGCTCTGTATGTGGTGGTCTGGAACCTGGCACTAGGAGAGGAGGCCGTGGCCAACCTACAGTCCTGGCTGCTCAACATAGAGGCACGTGCCCCAAACTCAGCAGTAGTAGTCATCGGCACACATCTGGACCTCATCGACACTAAGTTTCGCACAGAGCGGATTGCTACACTGCGAGCCTACATCCTGGCGCTGTGCAGGACGCCGTCGGGTGCCAGAGCCAGCGGATACCCGGACATCACCTGGAAGCACCTGCACGAGGTGTCGTGTAAGAACCTGGAAGGCATGGACGGTCTCAAGAGGCTCCTGTATCAGGTGGCCTGCTCCATGAAGGACATCAGTAATCCAGCCAGCTGCCACAAACTTGTGGGAAGACTGATCCCCAAGAGCTACCTGACCCTTCAGGAGGCTGTGTTAGCGGAGCGTCAGAGGAGAGACGCAGAAGACGAGGTCCAGTATCTGACGGATCTGGAGCTGGAACAGATCATTGAACAGAGCCCAGGCAGTGACATCAAAGACTACGAGGACCTCCAGACTGCAATCAGTTTTTTAATTGAGACTGGCACCATGCTGCACTTCCCTGATACGAGTCATGGCCTGTGTAAGCTTTACTTCCTGGATGCTGTATGGTTAGCCGAGTGCTTAGAGCGGATTGTGCATCTGAAGAGTTCGCGCTCTGTGGCACGTAACGGCCTGATCCGAACCGAGGACCTGCGCATGCTGCTGATCGGCACCGGCTTTACCCAGCACACTGAGGAGCAGTACTTCCAATTCCTCGCCAAGTTCGAGATCGCTCTGCCCGTGGCCAGCAACAGTTATCTCCTGCCACACCTGTTGCCTCCCAAACCAGCCATGGATATCCACGGCTTCCGCCAACATACCAGCAACACTATCCAGCGCCACTTTAAGATGAGCTTCGTTCCAGCGGGATTCTGGGAACGCTTCATCGCCCGTATGCTGATCAGCCTCAATCAAATGGACCTACAGGTCTTAGAGACTAAGAAAGGCTCACGGAGCCCACGGAACAGGAACTCCGTGATTTACAGCTTTGCGGGGAAACAGCAGAAGAACCGCTGCAGCACGTTCCGAGTGCGTCGCAGCCAGACCATCTACTGGAAGGAAGGGCTGTTGGTGACGTTCGATGGGGGATACCTGAGTGTGGAGTCATCAGACCTGAActggaagaaaaagaagagcgGTGGCATCAAGATTATCTGTCAGTCAGAGACGAGAGACTTCTCAGCGATGGCCTTCATCACTGACCACGTTAACGCTCTCATAGAGCAGTGGTTTCCTGCGTTGACGGCGAGCGAGAGTGACGGATCTCTGCTGATCGAGCAGTATTCTCCCTGTCCTTATTGCACTGCAGTCTCACTCCACACTGACTCGCTTCCTCAGACCAGCTCTAGCTCCACTACAGTTCACTACTTCAACATGGAGGACTGTgtgcttgctgctgctgagaaaGAGCACATCACCTGCCCCAATCACCCCAAAGAGCTCGTACCCCTCCAGGAGCTCGTACCTGAGCTCTTCATGACGGACTTCCCCTCACGgttgttCCTGGTGAAGAGTGACCTGGAGTGGAGTGAACAGGAAAAAGATATCCTCGGTCAGGGAGGCAGCGGCACCATCATCTACAAAGCCAAGTACAGAGGCCAGCCAGTGGCCATCAAACACTTCCCCTTTAAGAAATGCAGACAGCAGACACTCAACAGCGGCACAGATACCATGCTGAAGCACCTGCAGGCTATGGATGCTTCCAGAAGCTTCTCTGAGTTCCGACAGGAGGCTAGCATGTTACACACCCTGCAGCACCCCTGCATCGTGGCCCTGCTGGGCATTAGCATCCACCCGCTGTGTTTTGCCCTACAGCTGGCGCCACTTGGGAGCCTCAACACCGTGCTGGAGGAACGTAGCAAAGGTTCCTCGTTCATACCCCTAGGCTACATGTTGACCTTCAAAGCTGCCTATCAGGTTGCTGCAGGTTTGGCCTACCTTCACAGGAAGAACATAATCTTCTGTGATCTGAAGTCGGACAACATCCTCGTGTGGTCGCTGCAGGTGGAGGACTCGGTCAACGTCAAGCTGTCCGACTATGGCATATCCCGCCAGTCTTTCCATGAGGGAGCTCTGGGAGTGGAGGGCACGCCAGGATACCAGGCCCCTGAGATCCGCCCAGGCATCGTCTATGATGAGAAGGTGGACATGTTCTCTTATGGGATGGTCCTGTATGAGCTGTTGTCTGGCCGTCGGCCATCGTTGGGTCATCACCAGCTGCAGATAGCGAAGAAACTCTCCAAGGGCATCCGGCCTGTTCTGGGAATCCCAGAGGAAGTGCAGTTCTATTGCCTGCAGGCTTTAATGCAGGAATGCTGGGAGACCAAACCAGAGAAGcgtccTCTAGCCATGCCGATCCTGAGACAGATGCAGGAGCCGAGTTTCGCCTGTCTGAGGTACCTGTTGCCCTGCGAGCAGCACAGTCAGCTCTTCCTCTCCTCGCTGCAGGGCTACAGCGCCATATTCTGGGATGGAGAAAAAGACAACAGgaactACACGGTGGTGAACGCAGCCAAAGGTCAGGTGGAGGTGAAGCGAATGCCGTGCCCAGGATCATGCCTCAGCTGTCAGCTGAAGACGGAGAACACCCTGTGGACCGCCACCGAGGAGCAGGAGATCTTTATCTACAGCCTGAAAGAGATGTGTCCCCTGAGTCACCCGCAAAAACTGCTCTCTTGTCCGGCCGTGGTTACCTGCCTCATGCTGCTGCCAGCCAGGTCAGAGTCTCTGCCAAAGGTATTCGCTGGCATGGCAGACGGCCTGATTGCTGTGTACACCCTAGTGGATGACTTGCCATTGGAAGGTGAGGCCTACGTGTGCTCTCACACTGTGAACAAGACCCTGCTGGGGATGGAGGATTTGGACCCACGCCAAAGGCCACACCCTGTACAAAGCATCGTGCCTGTACGCTCTGGCTCTGAGGTGTGGTACACTAATGGGCCTGGTGTGCTCGTGATCGACAGCCTTACACTGCAGCCCATTCGCCGCCTTGACCCTTACCTCACACCCTCCCGCGTGGTCTCCATGACATCCGCCCCGAGTTTTCGAGGTGATGAGGCTGTCTGGTGTCTCGATGACCACACTAACACTCTGCTGATGTACCACGCCAGTAGTTACCAGCTCTGCGCCAGTTACAGCTGCGGTGACTTGCACCCATTCCGAGACGTTTTCCCTATCCAGAATCCAGCAGGAGTTACAGATGTCACTGTGGAGACTGAGATACaaacagaggaagaagaacCAGTCCCACTCGAGCCTAAACCCACTGTCACAGTGACAATAATGCACAGCGAGGACGCTGGCACACAGATCCTCAGCCTGCAGGACTCAGTAGATTACTGCTCTATCAGCTCCTCAGGGTTCAGCTCAGAGCAGCTGGCAGGACTCACCCACACTGAGGGTTCCAGCTCAGGGGCCCTCAGCTCGCTAGCCAGCTCCTGCAGCATGCCCTTCTCCACAGACTGTGAGGATGCAGACAGAGCTCAGGATGAGCCGATCTCAGAGGAGTCTTCACCTCTAGGAAGCACAGATCCAGCACCACAGAGCCGAACTCTTCCCCAACTTCAGGCCCTTAACGTGGTTCCAGTTAACGGCACAATCTGGATACCCAGGTGTGGAGGGGACATAATGGTGATCGAGGTGCAGGAACAGTCAGGGCTGCTCAGAGGTCGTGTGATTGCTGTGCTGACTGTCCCAGGAGTGCAACAGTATGGGGCCCTAGTGGAAGCTGCACTGGTTGCAAAGGACACTGTTGTATGTGGCTTTCGTAACGAAAACATGGCCTGGTGCCTGGCTGTCTGGAGGGGCTGGGGAGGCCGCGAGCTCGAGCTCTTCTACCAGTCCTATGAGGAGCTTGGCCGTTTGGAGACCAGCATGAGGAAAAGAAGGTagctgtgtgtgagcgtgtgtgtgcgttacAGAGCAGAATCGCAGCACTGTGTGGTTAAAGGTGACTTTAGGGAATACACACATATGTAAAGGTAAAAGGACTCAACTATTGGAAATGTGCAGACCTGCGTACTAGATACTACACACGTACACAAGCCTCGGATTGAGGGGATATACTGGAGATGGATTCGGAGGCCTAGATATGCAAACAGACACACCATACACGGTTGCCATATAAGCTTACATACACACTGGCTATACATTTGGACTGtatatccaaacacacacaccattatatTGGCTGAATCAGAGGCATGAGTGAGGAGAACTGACAGCAGTGCTATATTCATGAGAGAGAAGCTACATTAACTCAGCAAAGGCCAGCCCTGggagtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcacagCAAATTAATCAGCAAACCAAGAAACTTGAGACTAGAGCACTCAGACTTCCTGTAACAACAGCTCGGCTGTATTGCAAGTGTCTCTGCCTGAAGGCCATGTCAGTGTTTGTATTTCGAATTATGACCAGCAATAAGGCGTCCTGTATTAACCTTGTCTTCCCCAGAGCAGCTTCTTTATACATTGAAGCCAGTCTGGTGGCCAGCAGCTAGCCAATAGTAATGGACTATGGGATTTAATCAGAACTTTAAGTATGTTCACAGGTTTTAGAATGATTTGGTGGAAAATCaactttgcagttttttttcttcttaccccaaatgtagtcgATCAACCAAGACGTGATTAGTGTccaacatttgctttttttagaTTTGCACAGGAGCAATGAGGCTATTGTAGGTAAGACGTAATGAACATCCATCTTACGCAAAATCTTTTCACATAGTAAATATTTGCAGCATCCATCAGACCGCATGCAGTTCTTAGGTAATATCACATAGACTTGTTGacgtggtttgggacacagtaCGACTTTCATTCTAGACAGCCaggatcacttttttttttccttggagCAGGTTGGTATGATTAAACTCTTAGGGTCCAGCCTTCCAGAGTCTGAAGGTGCAGTTGTACTGGAAAGTTGATGATAATATAAAGactggtgacaaattaaaggaaaaaccaagataaagtgtcttagtaaggtttTGGGCCATCATGAATCACAAGAACAGTTTCGGTGTGCCTTGGCAGAGATTCTACAAGTCTTTGGAAGTGTGCAGGGGGaagaacaccattcttccaaaagatattacTTCAACTGGTGTTTTGAAGATGGTGGTAAAGAGCGCTGTCCAACACGTCACTAGGAAAATCTCCCACAGGTGTACAATTGTGTTGAGATTAGGTGAGTGTGAAGGCTATAGCATATGATacttcattttcatcctcattaagCATTCAGTGAGCTCTTtagccctgtggatgggggtgaagatatcctggaagagaccactcccaacACGATAGAAATGTTACATCATAGGATAAAAGGCagcagtcagaagaactttgcaCTGATTTGCAGTTACGCTTTCTTCTAAGAGGACAAGTGGGGGACAGCCTAAACCATGCCACCAAAATAATACCCCTAGAGCATAACAGAGACACaggtttttcatttcatttccctttgggataaataaagtgttatttaGTTTGTCACCTGAaatgttattttacaaaatctTTTACTCATAGTGAAATTATGTATCTTAACAATGACATTGTTATTGAAGCAAAGCTTTGAACATGGcatatattttacagaaaagatAGCTATAGTggagctccagtgcaaaactgaaaaaagcaaaTGTTGAACCCCAAACATGACTTAGCTGATTTACTACATTTGGATTACAAAATTGCATACATTCTTTTGTCAGAACATTCTTTAAATACCTCTACACTAGCAGAAATACCAGCATGTTAGCTTTTActattgtaaatatgtaatagAACTTTGTAAACAATTAACTGTATGATATTTATTATGGTCTATATGTCTGCATGTGTAAATAGATTGTTACTGTATTgtaaatttgaataaaactgAGCAGACCTGTATTGGA

Function

GO: NA

KEGG:

id description
K08843 LRRK1; leucine-rich repeat kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211159 lncRNA downstream 95469 8711177 ~ 8712118 (-) True G178398
TU210961 lncRNA downstream 214182 8593186 ~ 8593405 (-) True G178227
TU210939 lncRNA downstream 285502 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 483423 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 532227 8271107 ~ 8275360 (-) True LOC113536653
TU211259 lncRNA upstream 58833 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 79259 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 262686 9187071 ~ 9189914 (-) True G178673
TU211464 lncRNA upstream 273215 9197600 ~ 9197805 (-) True G178679
TU211667 lncRNA upstream 385839 9310224 ~ 9311903 (-) True G178867
XM_026930526.2 mRNA downstream 195281 8596180 ~ 8612306 (-) True plekho2
XM_026930613.2 mRNA downstream 218235 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA downstream 218235 8572475 ~ 8589352 (-) True ankdd1a
XM_026930546.2 mRNA downstream 242680 8550368 ~ 8564907 (-) True clpxa
XM_026930283.2 mRNA upstream 2427 8926812 ~ 8950809 (-) True aldh1a3
XM_026930818.2 mRNA upstream 58797 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA upstream 58797 8983182 ~ 8994947 (-) True asb7
XM_026930820.2 mRNA upstream 64777 8989162 ~ 8995120 (-) False asb7
XM_026930805.2 mRNA upstream 396581 9320966 ~ 9336186 (-) True mthfs
trnar-acg_8 other downstream 559825 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 560812 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 562866 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 564784 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 565409 8242106 ~ 8242178 (-) True trnar-acg_4
TU211757 other upstream 598031 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 889507 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2319590 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2484707 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2571689 11496074 ~ 11503962 (-) False LOC117598430

Expression Profile