RNA id: XM_034308571.1


Basic Information

Item Value
RNA id XM_034308571.1
length 3094
RNA type mRNA
GC content 0.45
exon number 27
gene id tpcn2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4302271 ~ 4322689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACTCACGTGCCGGTATGTTGGTTGTATAAAAAGCTCGCGCAAGTGTTATTCAGTTAGAGGATGTTGATGAATGGCAGAGGTGTAGTGAAAACCTGCCAGGTTTCCCGGTCTGTTCGCGAAAACTCAGGCGTTTTAGTAAGTTTAACAAAAGAACATTAGAGGGGAAAACATGGGCGGGGAATCTTAAAAACACCCGCCTTCTTGCTGTCATGAGCGGAAAACAGTCAGTGAGGCAAGAGGCAAACTTCTGAGGTCTGTCCTGAGGAAACCTCGGACACTTTATTCACGCAGAGCCGGATGGAAACGGAGCCGCTGTTATCAGAAAGCAGAAAGCAGGACTCGGTAGATTACGGCTCTCGACATGACTCTGAATCTGACTCCCAGTCTGACTCTAAAGGGACGAGTCGACTCTCTTATTCACACAGCAGGGACTCTGTCCATGTCGAAGAACGTGATGAAGAGCTGTGCATCCAGCAAGCGGTTGTATTTATTGAAGATGCCATTCAGTATCGATCCATTAATCACAAGGTTGACTTGAGATCCTTGAGCTTATACAGATGGTACTACTCCAGGACATGTCAGTGgggTCTTGGTATTACCATTGCTGTGATTCTGGCTCTGGCCTTTGTGGAGAAACCTTCCTCGATCACTTACACATCAGACCCTCGCTTCAGGCCTGATCCCTGGGAGCCACCATGTGGCCTCCCCGAGGCTGTAGAGATGGTCTGCCTCTGCATCTTCATCGTGGATGTAGTGGTCAAGAGTTATCTGATTGGATGGGAGGAGTTCCGTATGAATAAATGGCTGATTGGCTACGTGCTGGTTATAGCGGTATCAGTCATCGACTGCATGATCTCTTTTGCCATGCTGTGTGGTACGACCATACGAGTCAGGAGGCTGATTCGGCCGTTTTTCCTCTTGCAAAATTCCTCCTTAATGAAGAAAACTCTAAAATGTATCAAAAGGACACTTCCAGAAATAGCAAGTGTGATCCTACTTCTGGCCCTCCACCTGTGCTTATTCACCATGATTGGTATGCTGATCTTCCCCAAATTTGAGGACTCGTCGAAGAATGGGGAATGGGAGGCTTACTTCAAAGACCTGCCTAAGGCCTTGTCCTCTCTGCTTGTGCTGCTGACGACTGCTAATAACCCAGACGTGATGGTTCCTGCATACTCACTGAATCGGGGATATAccatattttttatacttttcagTGTATGTGGAACCTACATCTTGATGAATTTGCTCACTGCGATTATCTACAACCAGTTCCGAGGCTATCTGCTGATGTCAGTGCAGGCCTCTATTTTAAGGAGGCATCTGGGGATCACAGCTGCATTTAAGGTGCTTTGCTGTCCGGGTCAAAGCCACGATGACAATTCTGAAGGTCATGTaaaGAGAGTTCGAGTGGACAGAGTGCTGCAGGTCATGAGAAGAGTGCAGATGACATCATACTACAGACAAGCTGTCATTAAGGCTGCTCAGGAATTCCCTGATGGTTTTATTGATGGCGAAGCATTTCGGAGGCTGTTTAACGAACTGGATAAGGAGCACATCAGAGAGCACCCACCGAAACCAGAGTACAGCTCCTCATTCCTACAATCGGTCCAAAACGTGTGTAGTCATTACTACTTCACTGTGGTGGGAAACACCGTAGCCCTCGCCAACGTCATTTGCATCTGTAGCATCTTGGTGCTGGATTCAGACAAGACTGTAATGGAAAGGAATGATTACTACATGGAGatcATTAATTGGGCTTTTATCATCTACTACCTATTAGAGATGATACTGAAACTGATTGCCCTTGGTTGGAGGGGTTACATCTCTTACAGAAATAACATCTTTGATGGGTTCTTCACTGTCCTTCTGCTgaTCCTCCAGGTTACTATTTTTGTCATGTTCAGGATTACCAATCCAAAATCGATGCCGACTCTGCACGGGAACATATCTTTGTGGGAAATGGTGCGACTGGTCAACATGCTGATTGTCTTCCGTTTCCTCAGGATCATTCCAGAAGTCAAGaTGATTAAAGCGCCATATGTTGTACTTGACATCCATTTGTATccattaatgttgtggaacatcacaaaacaaTTGATGGCTCTGGTGGCTAGTACTCTTGTGGACCTCGTGAAAAACTTGCGGGCTTTTGCCGGGATTCTGGTGGTGGTGTACTATGTGTATGCTGTCATTGGTATCTGGCTTTTCCAAGGAGCTATTACTCCTCCAGCCTCAAGTGCGGCCAACTCAACTAGTGAGAATGGTACATCCAACTTCACCATGGAGTGTGGCTCCTATGAACAGCTGGAGTATTGGCCAAACAACTTTGATGACTTTGCTTCTTCTCTAGTTCTGCTGTATGACGTGATGGTGGTGAATAACTGGCAGGTCTTTATGGACGCTTACACGAGATACACCACTGAGTGGTCGAAGGTGTACTTTGTATCCTGGTGGCTCACCTCGTCTGTCATGTGGGTCAATTTGTTTGTGGCACTCATTTTGGAGAACTTTACTTACAAATGGGACAAAAGTCATGCGTTGAGCGTATCAGATGTGGAGAGAACAAACTATGAGACCACAGTGCTGATGATGTTCAGAGACCAAATCCAAGGACCGAGTCAGGAGGACATAGAGAGCCACCTCCAGTGTCTTCCACATCTCCATCTCCCTCACTGGTCCCTGCAATCACACAGCCCTTAACTACAGCGCCACATACACCTGCTCTCCACCACgcgtttacatttacattaatccTGACTAGAGTGTGGAGGAGTACAGTCTGCCATGGTCTTGAAGTGGGGTTAGTGCAGAAGACAACGCCATGTGCTGCTCAGTTTTCTGCTGAACACATGTTAGTGACATGGCACTGTTTTAAAATGCCAGagtccttttattattatttttatttatttattttttaattagtttagtACTAGAGCATTTCGATCTTGGTTATGAAAGGGAAATtatcagatttttgttttgaaatgaatgttttaaCTAGATAATGACTTTCAAGTCTTTGCAGAGAGATCATGGACAAGATGATACCATCCAGCCTGGTCtgagtttccaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006939 smooth muscle contraction biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0072345 NAADP-sensitive calcium-release channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K14077 TPCN2; two pore calcium channel protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208084 lncRNA upstream 1708 4300105 ~ 4300563 (+) True G175827
TU207982 lncRNA upstream 133870 4168187 ~ 4168401 (+) True G175744
TU207924 lncRNA upstream 291038 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 655547 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 687874 3614191 ~ 3614397 (+) True G175527
TU208102 lncRNA downstream 45918 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 63096 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 186727 4509416 ~ 4509701 (+) True G175905
TU208205 lncRNA downstream 251762 4574451 ~ 4574921 (+) True G175939
XR_004579122.1 lncRNA downstream 255668 4578357 ~ 4583831 (+) True LOC117598446
XM_034308572.1 mRNA upstream 2904 4281246 ~ 4299367 (+) True nadsyn1
XM_026930420.2 mRNA upstream 5024 4281244 ~ 4297247 (+) False nadsyn1
XM_026930437.2 mRNA upstream 73307 4206958 ~ 4228964 (+) True mmp15b
XM_034308801.1 mRNA upstream 156600 4142637 ~ 4145671 (+) True LOC113536728
XM_026930858.2 mRNA upstream 164883 4131602 ~ 4137388 (+) True sinhcafl
XM_026930325.2 mRNA downstream 163863 4486552 ~ 4491375 (+) True ccnd1
XM_026930514.2 mRNA downstream 290717 4613406 ~ 4645023 (+) True ano1a
XM_026930359.2 mRNA downstream 324708 4647397 ~ 4651092 (+) True fadd
XM_026930608.2 mRNA downstream 369844 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA downstream 369844 4692533 ~ 4725750 (+) False csnk1g1
XR_004579071.1 other upstream 5024 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 643995 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2223644 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2241988 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2937340 1361782 ~ 1364931 (+) True G173898
TU208265 other downstream 333916 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2799696 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 2945195 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3279537 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 3920733 8243422 ~ 8243494 (+) False trnar-ucg_6

Expression Profile