RNA id: XM_026930424.2


Basic Information

Item Value
RNA id XM_026930424.2
length 5838
RNA type mRNA
GC content 0.44
exon number 20
gene id arnt2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9418525 ~ 9529240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAAAACGGTTCGTTCGCGATTCGCTCATCCTTGGTgtcgtttttgtttttcccacaGAGGCGATATGGCAACACCCGCCGCTGTTAATCCGTCCGAGATGGGCACAGAGCTGCCTGGGCCGGTAACCATGGCAGGTGCTGTTGTGGGTGCAGGACAGGTGAGAATGGGGGGCAACATGCCAGGACGTGGGGGCAAGAGAAGATCAACAGGGATGGACtttgatgatgaagatggagaAGGGCCGAGCAAATTTTCAAGGTATGATGATGATCAAATGCCCGCTGATAAGGAACGGTATGCCAGAGAGAACCACAGCGAGATTGAGCGACGCCGGCGTAATAAAATGACGCAGTACATCACTGAGCTGTCGGACATGGTGCCCACTTGCAGTGCGCTGGCCAGGAAACCCGACAAGCTCACCATCCTGCGTATGGCCGTGTCACACATGAAGTCTATGAGAGGAACTGGCAACACGTCCACTGATGGAGCCTATAAACCCTCCTTCCTCACTGAGCAGGAACTGAAGCACCTGATCCTGGAGGCGGCTGATGGTTTCCTGTTTGTGGTGGCGGCTGAGACGGGGCGTGTGATCTACGTGTCGGACTCGGTGACCCCCGTGCTGAACCATCCTCAATCCGAGTGGTTCGGCAGCACTCTGTATGAGCAGGTCCATCCTGATGATGTGGAGAAACTCCGCGAGCAGCTCAGCACCTCCGAGAACTCCATGACTGgccGGATCCTGGACCTGAAGACAGGGACAGTGAAGAAAGAGGGACAGCAGTCCTCAATGAGGATGTGTATGGGCTCCAGACGCTCCTTTATCTGCAGAATGAGGTGTGGCAGCGCTCCTCTGGATCACATCTCTCTCAACCGTCTGTCGAGCATGAGGAAGAGATACAGGAATGGACTCGGGCCGTCAAAGGAAGGCGAGGCTCAGTATTCAGTGGTGCACTGCACTGGCTACATCAAGGCTTGGCCCCCTGCAGGAATGACAATCCCTGAAGACGATTCAGAAGCAGGCCAGACCAGTAAATACTGCCTGGTGGCAATCGGAAGACTTCAGGTGACCAGTTCTCCAGTCTCCATGGACATGAACGGGCTCTCTGTACCGACAGAGTTTCTGTCTCGTCACAACTCAGACGGCATCATCACCTTCGTGGATCCCCGCTGCATTAACGTGATTGGCTACCAGCCACAGGACTTGCTTGGTAAAGACATTCTGGAGTTTTGTCATCCTGAGGATCAGAGCCACCTAAGGGAGAGCTTCCAACAGGTCGTCAAGCTGAAAGGTCAGGTCTTATCGGTTATGTACCGTTTCCGGATGAAGAATCGTGAGTGGATGCTGATCAGAACAAGCAGCTTCACCTTCCAGAATCCATACTCGGATGAGATTGAGTACATCATCTGCACCAACACAAACGTCAaACAACTCCAGCAACAGCAGCAGGCGGAACTGGAGGTTCATCAGAGAGACGGCCTGACAGCATATGATCTCTCACAGGTGCCAGTGGGCAGCGTGCCGGGCAGCGTACACGAAGCAGGAAAGAGCATTGACAAAACGGAGACGCTGTTCTCTCAGGAGAGAGATCCACGTTTCAGTGACATGTACACAGGCATCTCTGGCTcggatAAGAAGATGATGGTGCCCTCGTCCACTGCAGGAGGACAACAGCTGTATTCCCAGGGCAGTCCTTTCCAGCCAGGACACTCGGGCAAGAACTTCAGctcttCAGTGATCCACGTTCCCGGAGTAAATGACATCCAATCATCTGCCGGTTCAGCGGGTCAGAATTTGGCTCAAATTTCTCGTCAGATTAACTCCAGTCAGGTGCAGTGGTCAGGCAGCAGGCCACCATTCTCTGGCCAGCAGCTCCCGGCTCAGTCCAGTAAAGCTCAGTCTTCTCCATTCGCCATCGGCTCAAGCCACAGCTACCAGGCAGATCCGTCCTCTTACAGCCCACTGTCCAGCCCAGCCACTTCCTCCCCCAGCGGCAACGCCTACTCCAGTCTGACCAATCGCAGCACTGCATTTGatgttgcAGGTGAGGGCAGTCAGAGCAGCGCCCAATTCCAGGGTCGGCCGTCTGAAGTTTGGTCTCAGTGGCAGAGTCAGCATCACAGCCAGCAGAGCggagaacaacacacacacactcagcccaGCCAATCTGAGGTGTTCCAGgACATGTTGCCTATGACTGGAGACCCCACACAAGGAACAGCCAACTACAACATTGAAGATTTCGCCGATTTGGGCATGTTCCCTCCATTTTCTGAGTAACAGCAGACTAAATTGCTTTCTgggtcatttttattttctctagaTTTCATGatcatcatctccatcttcATGAAGATCAATCAGTAAAACTCACACCAACACTTAATACTGAGTTTCACTGCCACACTCTGATACTGggctgtaaaacaaacaaaaaacttcctGTAAGCACACAAAGAAAACGTcatgtttctttttcagtaaATCTGTGCGCAATCTATCTTGTGACTGATTACCTGGTAAACACTAGACATGTGCCGATATATTTCTTACGTAAATGCAGTGATCATGTACGAATCGGAAATCCATAATCATGCTCACAAATCTGTAAGTGTAATTATAATGTACGGATTACAATTAAGAAGCTTTACAGTGTTCACATCGCGATTACAGATCTCAGTTAGTGGTTACACTGCTGTTGTAAATACTTTCTGGATGGTCAAAACACTGCAGTTTCGCCAGAAGAGTTTATTGTGCGCTCAGAAGACATGGGCATTCCATAGTCTAAACATGAGCTGGACACAGTCGACTGTTTATACCAATATGTGTGTGCAAGACACACGCGAAGACAACATAGATAATCCCAAGGCTAAGATAAGAGTAAGGCTTAAAAACAAGAGCAAGGACAGAAAACAGGCATAGGTACATTCTAAGTGAACAAAGGACAGCCACATATACATCATGGGCTCATGGTTAAGCAGaaatcaaattgaattttaatcttaatgattaaatcatgtatcattattacataatcatagaaaaaaaaggaaaattatacCACACCTCCACAGCAAATTTGAGGGCCAGGACCAAGTGATAGCTAGAGATAGCTTTAGGGGCGGAGCTAAGTGGATGCTGCAGATAGCTGAGGGGAAGGGGCTGAAACTAAACATACTGTGAGCTACAGCTCGTGTCAAGTTAACTCTAATTAATTACCTACATACACAATTACTTCTGACAGTAAGttactctatatacagtaaataattaatagttttaatgttgtatttttggactacatttacatgtatttgtTTCATTGGATGAAAAAGGAGCCATATAAACTCATGATTTTGTGCTTTGGACACAGGAAGTCAAGCACAGGCTTAGGAAACAATACAAAACCATTGGGAGTACTAAAGTTTTTCAGATGTTTCGATAAAATTATTACTGAGAATAGATGCCAAAAGACATAAATTTATTCAGCAATAAGGACTTAACATTGACTGCTAACTGAACCGAcattaatgtgtgaaatgtTGTGAACATCACAAGACTTGGTCGTTTATACACAAGCATCAGTCCAGTGTAGGGATGCATCAGTACAGTTTTTTTAAGACTGAGTATGAGTACAGTGTTTTTTGGCAATTGTTGATGCTGAAATCCAAAATGACAAggcttaattattattaaacatggtACGTGTTATTTAGCACTTCCTTGGTTTATGTGGTGGCCATAAAaagcgcatgtgtgtgttcatgcatttATGCTACTGGGCTCACTCTTTATAAAGTAcaagttgattttaaataaaaggcattagctagctacaataTTTACTTCGGATTGAGATGGGTTGCAGCGGAGAAGAGcgggttttgtttcactttagAAAAGGGCTTTTGTGTAGCTGTAaataaagtacttttttttgtattgccTCGGAAGCCGTCGTTGTCAGTGACGATAATGGCAatcatcaagaacaacatactagGCAAAAGCTGTTATACCGCATACAACTTACCTCAGAAGTAATTCGCGTGACAGAGTGATGCCATTTTTGAGCTTGGTGCATTCAATACACAcggtgggaaaaaaatggatgcCTCCacgtttgtcttttgttagcaacaagctagccagctaactatgATAAGTgataatcctaaccctaactctttCCTCTTTAAACAGTAAACCGTATAGTCAATGTTATGGATTTAACAATcgaatatatctgtatgttgatggATCTGAACCAAATACTTGTATACACAGCATAACTGtgggcagccatgttgattttgACATCACTCCACAAATTGGGAAGGAACTCAGTTGAGAAAACGACCCCAAGTTGACgagtaggaatttcaagttgagggcggcttttctttggcttttcctgaTTGGAGTTTGGAAATTGGAAAGTTGCAACCTCGAGTTGAACACAGcattattttcactcacctagcaTTGTCTGttgacttttttccccacttagCCAGCATTTGCTGCAGCAATGAATTCCTCATGCTGAGTCTaatttttaagatgttttatcaggttacatgtactgtaggaagatgctgtggTAACTCCTTGATATTtccacagagcacagtttgcagtctgctttgctttgattgccatcattaatcacgaaatacgtccagatcgctgtcatttcaTATCGTCTGTTCATTAGTGCGACAACATACACTAGGCTTACGTCACATAGTATCAAATGGTATCTGACTTTAGTGTCAGACATTAAGAGTATGAGTAAGTGAGCACAGTATCAGACTGACTCCAGTATCACTACTGATGCATCCCTAGTCCAGtggtttaaaatcttttttatcaGGTGAATATAAAGAAGGATATCTGAAGTTACCATCAAACATGGGCAAAATAGTGTACCTTAGAAGGGTTCTGCACTTTTGCTGCCTTCTAGGTGGGACAGTATTTATCTCTGTAGTGCAAACGCTGCCGAAAACAGCCTCCTCCCGAATGAAACGCAGGGCAGGTAACTGTGTAACAGTATAGTGATAACAACATTGAAGATCGCAAAATATAACCTGGTCAGTTATCGGCACATGCCTAGTATACATATTTCAACACTCCTCAAGACAGAAGGCTTAAAGAGATGGCTAAGTCAGTATGagagtctctgctgtaataTCATGTACGATAAGTATTTTCAGTGTTTCCTGTGATGAATTCTACACTGCACCAGCATTATGCTTAGTGTGGCATATATAGTCTATATGTAGTGATGTCCATAATATAGATGATCTAATAATAGTCGTAGATGGTTATGTAAACAAAAAGTGTTCCATTTCGAGCATCAGATtcgatgctttttttttaaacattcaagTGCTCTTCATCAGCAGCCTCAGTGCAGCAAATCAGCATTGCGTGTACAGCGTGTATCATAGTCTTTGTGGCTGCAGCGATTCTTTGTGACCTTTACTTTTTAACCTAACAGATATTTTATGGTTTCAATCTTTTACACAAAGAGTGTAACACAACTGAATGAAggactgatggaaaaaaaaaactttttgctAAATGAAAATGggtgtttttatgtaaatactgtGATTTTTACGTCTGTTCACATACACAGCTCCATGTGTGCTCGTGTAGGTTTAATATCATTATGTGCAATGTTCGTGCATATTTAACTCTCGGTATTTAGTTAGCCTGGTTATTGTACAATGAGTTTAGACTTGtataaactgtgtaaatgtgtccCGTTCATTTTTGTGACAACAAATTGTGCTTGTGACAATAAATTCTCATTGAATATGTGGATTTCAA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0048798 swim bladder inflation biological_process
GO:0021591 ventricular system development biological_process
GO:0003208 cardiac ventricle morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0072576 liver morphogenesis biological_process
GO:0001666 response to hypoxia biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211548 lncRNA upstream 85647 9320960 ~ 9332878 (+) True G178763
TU211550 lncRNA upstream 108342 9309317 ~ 9310183 (+) True G178764
TU211545 lncRNA upstream 117187 9300994 ~ 9301338 (+) True G178760
TU211546 lncRNA upstream 118868 9299386 ~ 9299657 (+) True G178761
TU211526 lncRNA upstream 140409 9277887 ~ 9278116 (+) True G178741
TU211587 lncRNA downstream 105519 9634759 ~ 9640636 (+) True G178798
TU211608 lncRNA downstream 221205 9750445 ~ 9750713 (+) True G178817
TU211632 lncRNA downstream 253301 9782541 ~ 9782746 (+) True G178834
TU211639 lncRNA downstream 295206 9824446 ~ 9907446 (+) True G178839
TU211918 lncRNA downstream 544578 10073818 ~ 10074017 (+) True G179085
XM_026930827.2 mRNA upstream 39974 9350196 ~ 9378551 (+) True fah
XM_026930828.2 mRNA upstream 39974 9350656 ~ 9378551 (+) False fah
XM_034308656.1 mRNA upstream 68616 9336647 ~ 9349909 (+) False zfand6
XM_026930761.2 mRNA downstream 17506 9546746 ~ 9590337 (+) True abhd17c
XM_026930312.2 mRNA downstream 95949 9625189 ~ 9754446 (+) True cemip
XM_026930794.2 mRNA downstream 241534 9770774 ~ 9774454 (+) True tlnrd1
XM_034308703.1 mRNA downstream 262840 9792080 ~ 9822229 (+) True il16
XM_034308705.1 mRNA downstream 262841 9792081 ~ 9822229 (+) False il16
TU210703 other upstream 1147776 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1147776 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1170437 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1173501 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1175031 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1566913 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1631106 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1631146 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1631146 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1882820 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile