RNA id: XM_034308620.1


Basic Information

Item Value
RNA id XM_034308620.1
length 5758
RNA type mRNA
GC content 0.52
exon number 29
gene id usp47
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3924247 ~ 3952150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCTCGCgcacactgagacagacagagagagagtgagtgtgagtgagagagagagagagagacggccaTTTTTAGTGCTCATTGATTTGCTGTTTGTGGTTTGCAGtaaaacagaaaggaaaagtgGCAGCGTTTACTTCCACTGGAAGTTTGTAAGGGGACAGTTTGGAGGCTGCATCCGGCTGGATTTGGGCCCCGAGCGTGAAGGATGTTCGTCCAAACGCCTGCACAGAGTCGCTGTTGACATCAGAGCCCCGGGGTTGATGTGCGTTTAACAGTCGCCCGAATGGAAATGGTGCCCAGCGAGGAAAACCAGCTCGTACCCAAAGAGCAGGGTATGTTTTGGAGTTGCAGGCAGAGTATTTTGGAGGAGATGAAGAAGAGGTTCTCGCAGATAGAGAACGCCGCCGAGGAACCCCGAGTGCTGTGCATTGTCCAGGACACCACCAACGCCAAGACCGTCAACGAGAGGCTGACGCTCAACCTCCCAGCTTCCACCACCCTCTCCAAGCTTTACGAAGACGTCGCTCACAAAGCCGGCTACGTGAATGGCACCTTTGAGCTGGCATGGGCCAACGTGGTGGATTTGGCTCCTCTGGACCAGGCCAGTGAGGTGTCTCTGGTGGAGTCTGGGTTCGAGCCAGGGAAGAGGAACTTCCTGCAACTCACTGACAAGGACGGCGAGCAGCCTCAGATAGCTTCTGATGAGTCCGGCACGGCGGACAGCAGTGGGCTGGACGACAGCTCTCAGGATCGCTTCATCGGACCCTTGTCCCGCGATGGTACAGTGGGCTGTAGCAGTGACTACAGCAGCCCCAGCTACTCCTACTCCTCCATACTCAACAAGTCTGAGACAGGATATGTGGGTTTGGTCAATCAGGCCATGACTTGCTACCTGAACAGTTTACTGCAGACCCTGTTCATGACGCCAGAGTTTAGAAATGCTCTATACAACTGGGAGTTTGAGGAGTCTGAGGAAGATCCTATTACTAGTATCCCCTACCAGCTGCAGAGGCTGTTTGTGCTGCTGCAGACCAGCAAGAAACGAGCCATAGAGACCACGGACGTGACGCGCAGCTTCGGCTGGGACAGCAGTGAAGCCTGGCAACAGCACGATGTCCAGGAACTTTGCCGGGTCATGTTTGACGCTTTGGAGCAGAAGTGGAAACAGACGGAGCAGGCTGACCTCATAAATCAGCTGTACCAGGGCAAACTGAAGGACTACGTGCGCTGTCTGGAGTGTGGCAATGAAAGCTGGAGGATCGACACGTACCTGGACATCCCGCTGGTCATCAGGCCTTTCGGAGCCAGTCAGGCTTTTGGCAGCGTGGAGGAAGCACTGCAGGCTTTCATCCAGCCTGAAACTTTGGATGGGCCCAACCAGTACTTCTGCGAGCGCTGCAAGAAGAAATGCGATGCACGCAAGGGTCTGCGGTTTCTGCACTTTCCCTACCTGCTGACGTTGCAGCTGAAACGTTTTGACTTTGACTACACCACTATGCACCGAATCAAGCTCAACGACCGCATGACTTTCCCTGAGGAGCTTGACATGAGCCCCTTTATTGACCTTGAGGACGAGAAATCCCCTCAGACAGAGAGCTGCACTGACAGTGGGGCGGAGAACGAAGGTAGTTGCCACAGCGACCAGATGAGCAACGACTTCTCCACGGATGATGGTGTGGATGAGGGCATCTGCCTGGACAGTACCAGCACCACTGAGAGGGTACTTAAGCCGAAGAGCTCACTGACCTATGAGCTCTTTTCGGTAATGGTGCATTCTGGGAGCGCCGCAGGTGGACACTACTACGCCTGCATCAAGTCCTTCAGCGATGGCCAGTGGTACAGCTTCAACGACCAGCACGTCAGCAAGATCACACAGGATGACATCAGAAAGACGTATGGTGGTTCCTCAGGGAGCAGAGGCTATTACTCTAGTGCCTTTGCCAGCTCCACAAACGCATACATGCTCATTTATAGACTGAAAGATTCCTCAAGGAATGCAAAGTACCTCGACGTGGAAGACTTCCCAGAGCACATAAAGCGTCTCGTTCAGAGAGAGCGTGAGACAGAGGAGCAGgagaagagacaaagagagatcGAACGCAATACCTGCAAGATCAAGCTCTTCTGCATGCATCCTGtcaagatgatgatgatgatggagaacAAGCTGGAGGTTCACAAGGACAAAACACTCCGAGAGGCCACAGAAATGGCATACAAGCTGATGGATCTTGAGGGTATAGTTCCTCTGGACTGCTGTCGCTTGGTGAAGTATGATGAATTTCATGAATATCTGGAGCGCTCATATGAGGGGGAGGAGGACATGCCCATGGGGCTGCTACTTGGCGGGGTTAAATCCTCCTACATGTTCGATTTGCTACTAGAGACCCGCCGACCCGACCAAGTGTTCCAGCCTTATAAACCTGGAGAGGTGATGGTGAAGGTCCATGTGGTGGATCTGAAGAGCGAGACCATCGCTGCTCCTGTCAGTGTCAGGGCATACCTGAACCAAACCATTACAGAGTTCAAGCAACTCATTGCACAAGCCACCGGGCTGTCCGCAGAAACCATGCGAGTTGTCCTGGAGCGCTGCTATAATGACCTCCGGCTTCTCTATGTGCCCAACAAGACACTGAAAGCTGAGGGTTTCTTCAGGAGTAACAAGGTTTTTGTGGAGAGCTCCGACTCGGAGGATCACCAGGCCACGTTCACTGACTCGCTCCTGTGGAAGCTTCTGGACCGTCACGGCAACACAATCAGACTGTTTGTTTCACTCCCGGAGCAGTCTCCAGGCTCCGTGGCCCACAGAACTAGTTGCCCCAAATTGAGTGGCGACTCTGAGGACTCGTTTGAGGGGGCTAAAAGCAGCGGCCAATGCGTAGAGGCCATACTGGAGGAGAGCACAGAGAAGTTAAAGAACCTTTCCCTCCAacagcagcagaagcagcagcagaagcaaTCCTCCAGCACCAGCGAGAGCCAGAAGAGTTCGGACCACAGCGATTTTGAGCACCTCGATTTCCCACAGCCCGAGAACCAGCTGGCTTCGGAGGAACGCTCCGACTCGGATGCCAACAACGACCGCAGCACCAGCTCCGTGGACTCGGACATCCTGAGCTCGAGCCACAGCAGCGACACGCTGTGCAACGCTGACGGTGCACCCCTGCCTCTGGCCAACGGCCTCGACTCGCACAGCATCACCAGCAGCCGCCGCTCCAAAGCCCATGAGGGCAAGAAGGAGACATGGGACACAGCTGAGGAGGACTCGGGCACCGACAGCGAATATGACGAGAACGGCAAGAGTAAAACACAGACGCATTACCTGTACTTCAGAGCAGAACCGTACTCACAGGCGGATGCTGCTGTAGATGGACAGAAAGGTTTACTTGTCCATGTTGATAAAAGGATCACACTGGCAGCGTTCAAGCAGAACCTGGAGCCATTCGTTGGAGTCCCCTCTACCCAGTTTAAGGTCTTCCGGGTCTACGCCAACAACCAGGAGTTTGAAAGCGTGCGGCTCAACGAgactctttcttctttctcggATGACAATAAGATCACCATTCGGTTAGGACGAGCCCTAAAGAAAGGGGAATACAGGGTAAAGGTGTACCAGCTGTTAGTCAATGAATCGGAGCCTTGTAGATTCCTGCTGGATACTGTGTTCGCTAAGGGAATGACAGTGAGGCAGTCTAAAGAGGAGTTGCTACCCCAGCTCCGAGACCAGTGCAACCTGGACCTTAGCATAGACAGGTTTCGACTCAGGAAGAAGACATGGAAAAACCCAGGCACAGTGTTTCTGGAGTATCACGTTTACGAGGAGGACATCAATATCTCTAGTAACTGGGAAGTCTTCCTTGAAGTTCTTGACGAACCGGAGCGGATGAAGTCCATGTCTCAGTTGGCGGTGCTGACACGGCGCTGGTGTCCGGCTCAGATGAAGCTGGAGCCCTTCCGGGAGGTGGTGCTGGAGAGCAGCAGTGTGGATGAACTCAAGGAAAAGCTCAGTGAAATGAGTGAGATTCCTATTGAAAACTTAGAGTTCGCCAAGGGACGAGGAACATTTCCTTGCGACATATCTGTGTTGGAGATCCACCAGGATTTGGACTGGAATCCGAAGGTTTCCACACTCAACGTCTGGCCCCTCTACATCTGCGACGATGGTGCGGTGGTGTTTTACAGGGACAGCACTGAGGAGCTCATGGAGCTCACGGAAGAAGAGCGCAACGAACTGATGAAGAAGGAGAGCAGCCGGCTGCTGAAGACGGGCCACCGGGTCAGTTATTCTCCCCGCAAAGAGAAAGCTCTCAAGATCTACCTAGACGGAGGGCCTTCTAAAGACCCGGGCCAGGACTGAGAGTGGCCCCCTACACcctgatcacttttttttttttaaatagctggCCTGCCCGCTGCAGTGTAGCGCTGCCTCACCAGGGGCCCTTGATGGCGTTGAAGCCCACGTCCAAACCAACGTCACCGGTGCCGCACGGCCGGCGCTGTCTTCTCCGTGCTCTGCGGGGGGGTCTTGTGTACGAGGCTCAGAACTTCTACTGTGCACTATAGTTTCTCATAAAGTTTAAAGGGAAGTGCAAAGCCTGTTTCAAATGAACGGACATCCAGTATCATTCAGACAAATCAATCTTGACAGAGGTGGATGCATTTGTGGAATAGAGAGACTATTTGTATCTCTTTCTCTGGCTGTATCAGTTAtacctttttttcttgtttgtttcccTCAATTACTATTCATTAATCACTCATTCTCTGATTGAGTAGTGTTGTTGTCCAACATGCACATGTCCATGATCCAAGTTTTGCTTGGTTGAGATACATGACAGACCCCTCATCTCCAGCACGAACATAATCATCCTCTGTGTTTTCAAGGTCCTCCACTAACTTCAGGTGTATTCTAATCGTTCTCAGAATACTGGGTCCTTTGCTCTTGtttgattaatgaattaaatgctTCTCTCCTGGATGATGAGGCTCCGCCCTGGCCTTTTCCCAAGAGTGCTTCCCTGCACGTGTGGGTGTGACGGTGGCTGACGCACTGTGCCACCCTGCTGACTGCTGAAGCTCCACCCATTGCAGAGGGAGCCCTGCCTCTTAATCCCGTACAAGTCCTCCCACTTCTCCCCCTGGGGTACTCACACTGGTACATTTTTAGTCTGTCTTTAAGACTAGGGTAATACAAATCAAGTAGAGCTTTATATTTGCCTATTTACCTTTCCCCACATATCGTCCTTGTAAATTATTTTCACCCCagacttgatgatgatgatgatgattctaGATCTTGTGAGTAACTggcacacattttaatttttttgctctgtaacccaattttctttttgtcctgtttttaaTTCTGCACAACATGAAcggagcctgtgtgtgtgttcgagcCTGGTCtctgcgtgtgtgcgtgtgtgtgtgtgctctctgtgTGATGCTACTTGCTGCTGTTTTTTGCATAGCCAGAGAGCAAAAGCTCTAAAGCAGGGCTGCCGGATGCAACTCGCCAGTTTATTACCAGGTTTAGTAGGTGTGTTAGAACAGGAAAACCACCAGACTGTGCTGTGGTTAGGTGGAGTTTGGCAACCCTGCTTTAGAGCCACACTGGAGGAGCAGCGCTCTGGCTCACAGCATCACTGAACTAAGCTGAACCACCGTGGGTCCCCTGGGCTCCTAACTCTGCCACAAGCTGTTCACTGTAGACTTGCCaatatggaaataaaaaaaatcagtttc

Function

GO: NA

KEGG:

id description
K11857 USP47; ubiquitin carboxyl-terminal hydrolase 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 1306 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 104717 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 128322 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 342276 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA downstream 346274 3572658 ~ 3577973 (-) True LOC113536694
TU208008 lncRNA upstream 123994 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 131822 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 346827 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 547328 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 669978 4622128 ~ 4622987 (-) True G175963
XM_034308622.1 mRNA downstream 14354 3851847 ~ 3909893 (-) False mical2a
XM_026930830.2 mRNA downstream 14354 3851847 ~ 3909893 (-) True mical2a
XM_026930831.2 mRNA downstream 14355 3851847 ~ 3909892 (-) False mical2a
XM_034308626.1 mRNA downstream 14355 3857751 ~ 3909892 (-) False mical2a
XM_034308621.1 mRNA downstream 14356 3851847 ~ 3909891 (-) False mical2a
XM_026930773.2 mRNA upstream 2847 3954997 ~ 3959191 (-) True clec3a
XM_026930775.2 mRNA upstream 2848 3954998 ~ 3959953 (-) False clec3a
XM_034308850.1 mRNA upstream 2848 3954998 ~ 3959627 (-) False clec3a
XM_026930774.2 mRNA upstream 2850 3955000 ~ 3959184 (-) False clec3a
XM_026930724.2 mRNA upstream 10680 3962830 ~ 3989596 (-) True vat1l
XR_003403696.2 other downstream 14356 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 14358 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 351985 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 622977 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 784086 3140070 ~ 3140161 (-) True LOC113536794
TU207939 other upstream 40576 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 96715 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 100439 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 143057 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 144564 4096714 ~ 4096770 (-) True LOC113536789

Expression Profile