RNA id: XM_026930437.2


Basic Information

Item Value
RNA id XM_026930437.2
length 6348
RNA type mRNA
GC content 0.45
exon number 10
gene id mmp15b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4206958 ~ 4228964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACGAGCCGATCCTTCTGCTCTTTCCCAGAAAATCTGGAAATTTTTAAACCTGCAACAAAGCCGTGAACGCACGTGAGACATAACCGGCGGCGAACAGCTGAAATCCGCGCGCACGCGCGCACTCAGGAGTGAACTGGACGGAACTGACGTCATGCAATTTATCTtcgggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgcctTGTTACATTAAGGCGGGATCTGGAATTTGCTCTCCGCGCGCACTTCTAACTGACGTTTCACTTGGACGCGACTGTAACTAAGGCTCGTGCGCGCACGTGAAAAAGGAGGAATAAACGCAGCGTGGACACACCCGCGGGATATGATCCCCACGAAACTTGTGCCAGAGAAGCGGACCTCTCTGAGTTTTGGGTCCAACCCCTTGCAACTCGACTACACCTATTGCCTCCGGTCATTTAAACCGCTAGAGTGACAGCTCGCGCACGAGAAACGTTTTAGCATTTGATCCTGGGTGCAGAGTAgagtggaggagaggagaagagagaacaCTTCATAGCTTCAGGGCAATGCAGCCTTTGTAGACTTGTAGGTCTTTTGCAAGTTTGAAATCAGGAGACTCGAGATCATTTAGACTCTTTGAGGATCTGGCATCCTACAAGACAGAGAATTGATCCAGAATTGTGAACATGGCATCATTGTGGCATGTGATGCTCCGGACACTGGTTCCTTCATTCCTGGTGCTTTGTCTGTGTGGGACACACACATTTGGAGATGATGACTTCAATGCAGAGTCCTGGCTCCGGATGTATGGATACCTCCCTCAGGCGAGTAGGCAGATGTCCACTATGCGATCGGCTCAAATCCTGTCCAGTGCCATCAGTGACATGCAGAGATTCTACGGTCTGGAGGTCACAGGAGAGATGGATCCAGCAACTATAGCAGCCATGCAGAGGCCTCGCTGTGGGGTTCCGGATAAGTTTGGGGGTCAGATCAAGACTAATGTTCGCAGGAAACGCTATGCACTCACTGGCCATAAGTGGGACAAAACCCACTTGACCTTTAGtaTACAGAACTATACTCCTAAGATTGGGGAGTACAACTCATACGAAGCCATTCGTATGGCCTTCAAGGTGTGGGAGAAGGTAACACCTCTGACGTTTGAAGAAATTCCCTACCTGGAGGTCAAATATGGCCGGCGAAAGGAACCTGACATCATGATCTTCTTCGCCTCTGGTTTCCACGGTGACAGTTCTCCGTTTGATGGCGAGGGTGGCTTCTTGGCACATGCCTACTTCCCTGGTCCAGGGATGGGCGGTGACACGCACTTTGACTCAGACGAGCCGTGGACAATTGGAAACGAGAATTTGCAAGGAAATGATCTGTTTCTGGTAGCAGTGCACGAGCTGGGTCATGCTCTAGGTCTGGAGCACTCCAATAATCCTTTGGCTATTATGGCTCCCTTCTACCAGTGGATGGACACAGAAAACTTCCAGCTTCCAGAGGATGATCTCAGAGGCATCCAGCAGATCTATGGACCTCCTGACAGTTCCCCAACTCAGGCTCTTCCCACTGTGACCCCTCGCCGTCCCAACCAGCCTAAGAACCCACCAGGAGCCCCACCACGTCGTCCAGACCGACCGCGCACCACTGACCGCCCAGATCAGTATGGCCCCAACATCTGTGAGGGCAACTTTGATACGGTCACTGTGCTCCGTGGAGAGATGTTTGTTTTCAAAGGTCGCTGGTTTTGGAGGGTCCGGAGAAACCGAGTACTGGATAACTACCCCATGCCCATCGGCCACTTTTGGAGAGGCCTTCCAGGAGACATTGATGCAGCATATGAAAGACACGATggcagatttgtttttttcaaagGGAATCGGTTCTGGATTTTCCGGGAGGCCAACCTGGAGCCAGGCTACCCTCAGGAGCTGGTAGATTATGGCCGGGACATTCCTTATGACAAGATTGAGACGGCCATCTGGTGGGAACCATCAGGCTACACCTACTTGTTTAAGGGAGATAGGTACTGGCGTTTTAATGAGCAGTCGCGTGCAGTGGACCGAGACTACCCTAAACCAATCAGTGTTTGGGATACGTCAGTACCCACATCTCCCAAGGGAGCTTTCCTCAGCGATGATGGAGCATACACATACTTCTACAAAGGCAGCAAGTACTGGAAATTCGATAACCATCGGATGAAGAGTGAGCCTGGATACCCCAAATCCATCCTGAGAGACTTCATGGGTTGCAACGTGGACCTGGATCCTGACCGAGACACAGACGTGGACCCGGGACGGAAGTGGCCTGACAGACCACCCTTCAACCCGGATGCAGGCCGAGACaaggacaaagagaaagaaaaggacaaGGACAAAGGAAAAGACAAGGACAAGGAGCAAGATCGCACCAACGATGTGGACACCAAGGAGGAAACAGAAGAGAAGACGAATGATGTGGATGTGGTGCTGAAGATAGATGAAACTGAGCGCACCATGAACATCATCATGGTGACTGTGCCGCTGATCCTGGTGCTGTGCATCCTGGCGCTGATCTACGCCATCATCAACACGCTGCAGAGGAAAGGGGCACCCAAGTACTTTGTGCACTGCAAGCGATCCCTGCAAGACTGGGTTTAACTTGGACTCCTAGGTTTCAACTCTGACCTCTGAACCCTTGACCTCTCTTCCCTTTCGTCCATGTCGGTTTTCATCTTCctaatatatttacattgtgcgcacacacacacacacacacacacacacacacacacaccccttataCTCTGTTATCCCATGGTGCTGTCCTAATGCATTGACTGTAGTCTATTTATATGAGAGTTTGCacatttgttattgttgttttccttcctttcttcatggttttgtttttcccctcttttcacTCACTTGtgcacatttctttttatttctaaaccAGAATGATTTTTAATTGTGCTATGATAAACTGCCATATGGCTTAGGAAGCATACTCTGGATGAGAAAAATACAAGAGAAATCTAAAGCATGCGCAGTAcgaaaaagggaagaaaaggaGTCAATCTTTGAGATCTTAATAATTGCTCCCTTTACTCAGGATTCAGATGTCGTCTATTCACTGACTGGAGAAGCCAAACGGGAAAGACCTGTTGTAGAAAACAAACTGTTTTCAACACGACTGGCCATTTAGCGCTCTACTTGAGGCATGCTTGCCAATGATGAAGAAAAtcccatgtgttttattgccTTAGTCGAAGCACTCATGCTATTGTTTTAACAACGGTGCCTTGGTCTTTCCAGCCAAAAGCCTTCCTGTAGTTTTACCCCTATAGGAGGAGCCCCTTGATCTCCCTCGTGTGTTGCTTTCTCTCTATGATCCTATGATACTGTTTGACCGTAATCTTTTATTGTCAGAGGAGTGTAGCTCACGTGGTGCTTTTCCTTTAGGACAAAAAAAGGCAGCGTACTGTGAAACCACACTGCAGGGGGACGGGAGGGAACCTTTGAGGTACTGGATGCtgaaggaggtttttttttttagatgtaggAACCATTAGCCAAGTGTAGGCTTGCTTTAAACAATGTAATCAAACGCATACACAAAAAGGCTTATAAAAACATACCACTAGTACACTATATACCACTTGAGAGGAccaattcaaaaataaataaaaggcatTTGTGTTTCTCGAGCCGCAGTCATAATGAAAGGCCTTGCCGGGCCTCTTTCCCTGCCCTGTTAGAGGCTGTTAGATAATCctctcattttaaaaacagcaggTGGGCAAAAACATTGCTAACCTCCCACCAGGGTAACATGAGGCCTTCTGCACCTAAGAAATCCTACTCTGATCTGCTGACGCATGTAGACAGCACGAGAAAGCAACGGAGAAGAAGCgtgatatagagagagagagagagagagagagagagagatctgtgaAGGTTTAAAGGGAGGTGGTTCAGCTGTGGAAACCTTATCTGCCATTGGAAGACGCTTACAGTGTGTTGCTCCAGAGACAACTTACTTTATACACATTTCAAGGGTGGTGCAGAGGAGCCTGAGCTGTGAGAATATCCTCTTGAGTACAACAGGGAAGAGGACAGAGCAGATCCTATGCTCCTATGCTCATATGGGAGCAGGCTGGCACACATTCGTGGCATCCACTCTGCCACTGGTTATTTTTGAACCACATATTTTGAATGGGAAACAGGATCTGCTGCTGGCATTCGCTCTCCGTCCATTCAACAGCTACGAGCTGGCTTTGACATGTCGCTCACGCTCCTCAAGATTCAAACTCGAACTTGATTTTGATTGAGGATTGAGCAGCTTGTCTTTGTTTTAAGTAGAAAACTTTCACAAGAAAGTGATTTGCTTAGCGTGACCTCAAAACATCAGTTCAGCATTGCACATTTTTTGAGAAACAATGCATCTCAGTGCCAGGGGAGAAAGTTTCCGTGTTCACAAAGGCACAGAGGATGGCGTAGATGAGAGAAGGAAAGTGAGTGGTACTATAAATATTGCCTTGTCGGGCAAGGTTGACTCGAGACCactttcataaatattatgGAGAGACTAGAGGAGACAGAGGACAGTCATGACTTGCATGCCATCGCTGATGGAGGCCGTTCAGCTCCCTTGCCAGGCAGCACCCTTCCCCCTCCATTCGAAGAGGAGAGTTAATCAGAGATAAAAGCcgttcctcctctcctctcctctccccccTTCCCCTCCTCCCCAGATCAATGAAGAATACACAAACAGGCCTGAAGGGGATCCAGAATTCAAGACTTCATGCTCAGCCCATGCTAGCCTGATATGTTCCCATACGTGCAGATGTTTACTTGCTGCTCCGCACCTTTGTGGCCTTGCTTCGAGAGACCTTCTGGCTGTTTTGGTGTCCTGGCTGATTAATGTTATCTTTGTGTTTGCTTAGGCAATTGAAACCAAATGCTCTGTCAAGGCCGTTTAAAGTGAACTTGTCCAGTAAACACACTGCTCGTGTGAACTGTTCATAAAAGAAAGGCTCACTTTAGACTGTTTAACCTTTAAAGACAGATCTTTCCTGAAGCTAGAGCTAGTTGCAGGACTACATTGGGCATGATCTGAATCCTTAATCAtttaagtgagtgagtgagtgaagtgacttATCCTTAATCATTTACATGGTAGCGATGAAACAGGAGTGGTTATGCTGGAGAACggctaataaattaataaataatcaaagcTGCACATAAATCTGTGTAATGAGAATGTTAGGATCCATGCTTCATTCTCCCACTCATGTCTACTCCTGTACTTCGGCTCAAATAACAATGGACCCTCTTACTTTGGGCATTATTGTCCTGCATAGTACTTTTTCTGGCCAACAGGAAGAAAGTCTGGGCTTTAGGCCAAATCCAGGAAGCGTCCTCCCACAATCGCTCACTCTTGCATAGCAATCTTAAAGGCATTGTGggttttagtaaaatatttcCTGAAGTTGCagctcagtgatttttttttttttcagttgtgcattgttttttttttttttttttagcagcatTGTATTTGTGCAAGACGCATCCACACAAAATAGCAGACGTGATTTAATGTCTGTGatctttctcattctctgtcttCTGATTTATGCATGAAACAAGAGTAGATCTCTGTTATTCATCTGTCCTGCTCATTTCTTTAATCCCATACTGTAATTGCTAAATAGTATGAACAAAGGATGTCATAGTGCCGAAAATCTGTCATATTTCGGTAACTGTAGCCTTGGCAGTGTCAGGATTTTTGTCAGTATTACGCAATCTGTGTCAGGACtgagaataatttcactgtagtCTTTAAACTACACACTGACAGTACGTCTGTTCCTGTGTCACTGTATCACGAAGCATCTCACTTTACCCCATGAGCCATGTGTCATGTCTTTTAACAAAGCAAATCCGTGCACAGACTGAATAATTAATCAAATCaggtaaagaaataaaaggctCACTCATGTTGCTAAAGCAATGTCATGACAATGTTGTGCAACTTATATAGTGctgcaattatttttaaaaaacctcatgtttattaataatgattaaatgtatGATACtatttttgtggttttggttCAATTGATTGATTTCCTGACTATCTTATTTGAAATTAATTGGTTGTTTTTgaaattgtaaatattgtaggacttttttactttgttaataACATTCcggttttgtgtttttattttgttttctgatgtAGAAACTGaagattttatacatttgtgttgtttgttgatCACATCTGTTGAGTGTCTCTAATGATCCATGCTGGAcatgtaaacaataataaataaatgatctgAATAT

Function

GO: NA

KEGG:

id description
K07995 MMP15; matrix metalloproteinase-15 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207982 lncRNA upstream 38557 4168187 ~ 4168401 (+) True G175744
TU207924 lncRNA upstream 195725 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 560234 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 592561 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 598114 3605162 ~ 3608844 (+) True G175517
TU208084 lncRNA downstream 71141 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 139643 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 156821 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 280452 4509416 ~ 4509701 (+) True G175905
TU208205 lncRNA downstream 345487 4574451 ~ 4574921 (+) True G175939
XM_034308801.1 mRNA upstream 61287 4142637 ~ 4145671 (+) True LOC113536728
XM_026930858.2 mRNA upstream 69570 4131602 ~ 4137388 (+) True sinhcafl
XM_026930859.2 mRNA upstream 69570 4131739 ~ 4137388 (+) False sinhcafl
XM_034308802.1 mRNA upstream 69570 4131940 ~ 4137388 (+) False sinhcafl
XM_026930853.2 mRNA upstream 78404 4079858 ~ 4128554 (+) True dennd5a
XM_026930420.2 mRNA downstream 52280 4281244 ~ 4297247 (+) False nadsyn1
XM_034308572.1 mRNA downstream 52282 4281246 ~ 4299367 (+) True nadsyn1
XM_034308571.1 mRNA downstream 73307 4302271 ~ 4322689 (+) True tpcn2
XM_034308570.1 mRNA downstream 73308 4302272 ~ 4322689 (+) False tpcn2
XM_026930415.2 mRNA downstream 73309 4302273 ~ 4322689 (+) False tpcn2
TU207714 other upstream 548682 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2128331 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2146675 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2842027 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3464248 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 52280 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 427641 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2893421 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3038920 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3373262 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile