RNA id: XM_026930479.2


Basic Information

Item Value
RNA id XM_026930479.2
length 6987
RNA type mRNA
GC content 0.45
exon number 23
gene id il16
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9792080 ~ 9822229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagggagagagaagggaaaacTTGTTTCACAGTGCACCTTTTATCATCCAGCACGAAGAAACCCACTTCTCCTTCTTCACTCTTCTGGATGGATGAACTCCATGAGCGCCTTTTAAGGAGTAGATAATTCTCCTCCACCTGGATGTTCTCATATGAGCAGATGATCAGCGCCGAACGGCCCCCTCCATTAGCAGCCGTTTGGAGTGGGAGAGAGCCTCCCTCAGCGGCCATCATGCCTCTGAGAGCCACTCAGACGCAGCAGCGGCTAAATGGGAGAAGAACCAGGAGGATGGAAAGGGCCAACACTGGACAGCGCTCCAAAAAGCTGGCCATCATTTCCCGATCTCTCCTTATCTGCAGCTCCAGGAGCAGCGATGACGCCTCTAGCCCAGAAGATAGGTATGGATACGAGAACTGGAAAGAAAGGTACCAAGGAGACCCTCTGGAAGCCAAGGCTGGACATCTGGAAATGAATTTCAGCAGGAGTGTTAGCCTACAGGGATCCAAGTGGAGTGAGGATCCCAAGAAGAACTTAAGGAGGTCCTTTTCCATCAAGGAAAGCAGTTTCTGGAGAATGTGCATTGCCACCGGGGAGGAGTGCGGGCCGCTCGGACCTCAAGTGGCTGATAACGACCTCCAGCTTGGTGACAATATAGTCAGTGTGCGAAACGGAGGCCAATTACACAGGGACACTTATATCCACTATGGCGAGAGGCTGGTCCCGTTTAATGGGCAGGTTTTAAATGGCCACACAAAACTCGAGTCAGAGAAACAACCAGCCATGACAGCTGATCCCAGAACAGCTAGTGCTGAGGGTTTCAGCTCATGCGAAAAGAGTGGGCCACTACTTAATAGTATTTCAGCAGACTCTGTGACCTACAGGAAAGAAGTAGTTGGAAACAATGGTAATTTAAAGAAGCCCATTATAGAAGTAACAGAGGTCAATAAAAGCTGTGAGACGGAAGATACTGAAGGGACAGCCTGCAAAAGGAATCGCTCAAACTCTACAaGTGTTCACCCATACTGGATTGGAGATTTGGATGCCATCATTATGAAGACACCAGGGCTGTTTCCCTGTCATGTTCCCACTGCCACTGGCATTTACGGAAACAGGAAGTCTCTTTCTCAACAACTGGAGTTTCCTCCCAGCGTTCCACAGGCTGTGCCAAGGCCTTCTCGTTCACTCAGTTCAGCACATCTGGTCCATTCCAGCAGCAGTGTCCAGGCCTTCATCATCTGCAATATAGTCTTAATGAAGGCACCTGGCAAGGGTCTAGGTTTCAGTATAGTGGGAGGCAGGGACAGCATGTATGGTCCAATGGGAATCTATGTAAAGACCATTTTTCCTGGTGGAGCAGCTGCAGCAGATGGACGTCTGCAGGAAGGAGATGAGATTCTGGAGCTGAATGGAGAATCTCTGCATGGTCTTACTCATGAAGATGCTTTACAGAAGTTTAAACAAGTGAAGAAAGGTCTGCTGACGCTGGTGGTAAGGACCAGGTTGGGTGCTGTAGTTGGCAGTCAGACTCAGGTGGCCCAGCTGTGCCGCTCCAAGTCTCTGAGCTCCACCGCAGGTATCAGCAGAGCCAGTGATGAGCTGGCTGACTTCCCCAACTTGGGCACTCACGCCAAGCCCAGAGACCGCATCATGATGGAATTCACCCTGCAGAAGGaggTTGGTGTGGGACTTGGCATTGGGCTGTGCTGCGTTCCGTCTGCTGAAGGTGGACCTGGAatctacattcacacactgtcacCAGGTTCAGTGGCACACATGGATGGGCGCTTAAGaTGTGGAGATGAGATTGTGGAGATTAATGACACTGTGGTTTGCAACATGACACTCAATGATGTGTATACAGTTCTGAGTCAGTGCAGCCCAGGGCCAATTCAGCTCATCATCAGTCGACACCCTGACCCTAAAGTTTCTGAACAGCAGTTGAATGAGGCCATTGCCCAGGCAGTAGAGAACAGCAAACTGAAGAGAGACAAGAGTCATTGGAGTATGGAGGGTCTGAGGAGGATGGAGCCATGTTCCCACAACAGGACAAAGTGTGAGCGCTGTATGGAGAGAAGCCACAGCCAGATGAGCTGCAGGCGAGCCCAGAAACCCATGATCCGTTCCTGTAGCGAGGGTGCATACAGCCAGCGCAGTGCCCTAACCAGTGCCAACATGCTGCCCATTCCCCCACACCAGAATGTCACTCGTGTACATAGCATGGACGCCTCCATAACAGCCAACTGTGAGGCTCAGACCAGCAGCAGACCGTCCCCGACATCATTCGCGAATGATGACTACAATGTGCCCTACAACTCTCAAATGAACTTTGTCAGTTATGAGAGGTTAGATGGAGGTTTCGGGAGGACAAGGGGTTTTAAGGGTAGGCCTCGTTCTCTACCACGAAGGTACTGTAGACGGCACGGTGTCACCAGTGAAGAGCCACTGACCGACTCGAGTGGCTCTAATGGAGGTTCACCAGTGAAAGAGGAAGATCCGTTGCCTTCACAAAGCTGCCAATTGTTCTGCAGTATATACAAGGCTTTGAGAAAGATCTCAAGGCTTCTGTTTCAGAAAGAAGCGGATGAGTGTTCAGAAGAAGCTAAAGCAGCACTCTCTGAACCTGTCGCTGCTCATACAGCTGAAAACATACACAGGGAGGGCAGACAACACAGAGAGTCTCAGTCTCCCAACAACCCGTGCAGTCCAACCAGGAGAACCAGTCTGAGACGTCAGGACTGTGTGGAGTTGAACTCTGATCAGCCAGTTGACCCTTGGGTGAGGCTAACAGACAGTCTTGAGAAGCGTCTGAACCATCGAAAAATCATGAGTGACCATAATGGGAATAATGAGATAAATGGCACAGTCTCAGAGACCACAGACCCCATCTCCAGCTCAAAGCCAGAGGAAACTGCTGATGTTAAAAAGGGGCCTCCAGTGGCTCCAAAACCTGCTTGGGTACGCCAAAGTCTTAGAAGCATTAAGTCTGGGAGGTCGCCAGCTGAGGCctttaaaaatcaatcaaaaagcCAAGATACTGGAAAGACCTTTGGAGTTAGTCTGAGGGCTACCTCATCAGCAGCAAATCTATCTTTCAAACAAAAGCTCAGCTCATTTGAGACCTTTTCTAACACTGATGGAGCAGAGAGGACAAGCAGAAGATCGGCTCCATCCTCATCGCTTCCTCAGATGGAAAAAAGTCCAGCTAGGTTTGAGAAAGCTCAGCCTGTAGAGACCAGCAGCACATGGAAAAGTAGAACCACTGTGATTAACACACATGACAGTGACAAACCTTCTTCAGTGATAGATTCAGCCACCACCACCAAAGCATTTCCTGAAGAAGAACAAGCAACCTCAAAAATAACAGATTTCCAAAATGAGACCCCAAAAACAGATGATACAACTGCAGCCACAAAACCGACTGAGGGTTCCGCAAGCCCTCCAGTAGAGATTCCTTCTTCTTTGGAGGATGAGAAGGAAACAAGTCCTGTTCAGAAAGATGAAGAGGAAACAAGTGCTGCTCAGAAAGATGAAGAGGAAACAAGTCCTACTCAAAAAGATGAGGAGGAAACAAGTCCTGCGCAGAAAGATGATAATGAGGAAACAAGTTCTGCTCAGGAAGGCTTACCCCACATTGATCACTGCCCTAGAAGGTCCAGCAGTTCTAAAGATCCTCCTTCACAAAATAGATCTTCATTGGAGGGCCACGGCAGTCACACTGCAAGCTTAAGAACCAGGAGTCTACCCCTGAACACCACCTCTTTGTCAGATGCCCATGGCCAAGGTGGACTGGAAGGGGAAACCCTAGAGATCATCCTGTCATTCAGCAACCAAGTGTCCCATGCCCTGATGCGTTCCATGCAATCCCTTCCTCAGTCCCCATGCCTAAAGCTTGGTAACCCATGGAGTGCGTCATCTGGATCCCCTCACCATAACCCCACAGAGGAAGACATTTCTCTGTCTGAGACCTTAGTCTCACTGGCACCAGACAGCACTGAGAAGGGCTTCTCTGTAAGCCTGGCTGAGCTGAGAGAGCGCACTAttgagagaggagaagagagtgACAAGGCTGAAAGCGCATCTGAACGACCTCTCACCACACCCTCTGAAGTGTGTGCCCAGTCTGTGATCTCAGCACTTCCACCTCAGGAGATCCAGCGGCTGATCCAGGAGGTCAAGGATCTTGATGAGGACACCCTAAAGCAACTGGAAGACATCCATGTAGTGATTCTTCACAAGGAGGAGGGAGTTGGCTTGGGTTTCAGTATTGCTGGTGGTATCGATCAGAACAAAGCAACTACAGTTCACAAAATCTTTCACCAAGGCTTAGCTGCTCTGGAGGGCACCATCGAGAAAGGAGACGAGGTGCTGTCTATCAACGGACAGACAATGAAGAACGTGAAGCACAGCGATGCTACAGCAGTACTCCGGCAGGCGCGTGAACTGAAGCAggcagtggtggtggtgtgcAAGAATAAAGAGGCAGAGAGTAGCATAGATGCTAGCACTACCGAGGCCAGCTGCGGTACTGACACAGAGCAGAGCTTCACAGTAGATGAGAGTGGAGACGTCCTGACTCTAGAGTTGGAGAAGAACGCAGGTGGAGTGGGTTTTGGGCTGGAGGGAGGAAAAGGCTCTATTCATGGAGACAAACCTTTGGTCATCAGCAGAATCTACACAGGCAGTACAGCGGAGCAGAAGGGCCTTCAGGTTGGTGATGAGCTGCTGCAGGTCCAGGGCTCCACAGTGCAAGGTCTTTCACGTCTCGAGGCTTTGACTGTCCTCAAAGGCCTTCCTGATGGATCATTCACAGCCATCGTGAGGAGAAAGAACGCTGAACAGAGCTAAATTCTGAAAGTATTACCAGATAGCTTGAAAAGTGTGAAAGTACTGAATTTTAGGAAACATAGTCTTAAACACTTTCAGTGGAAAATCCCACTTATGCTGGTCATTTCATGCAATTTTAATATCAGGATTATATTTACGTAGATAAGgattattattgaaaatatCTTGATTACAGTAAAACATATCTAGTAtgtcctattataagattatagtAAAccaattataagattattaaacctatttctagacatatatGACAAATTTCAAGCTTGTTTTATtggcaaaataaaacaaaattatctgccaatagaataagaaagaCTAAAAGATTAAGACAATACAAAatattgaaatgagtaaaaatgtctacaagtaggtttaataatcttatatttgttttattgtaatcttataaagggaaatactagatcaatttgactatattcaaaatattgtcACTtgctaaaatgcattttttttgcagcactCCAATGCATTACATCAGATTGCATGTGGTTAGTGACTGCTGAAGACTGTGCCTTTAAGGAAACAGCATGCAGAGTTGTGATTTTGAAGCGACAACCAGGGTTTGCataaaacagcagaaacaaGGAACGATACAGGAAGTTGGTGGTCAAGTGTAATTTTCATATTCAATGTGTCACACTGTCAGATTTCAGTCTGTCTGGAAAAGCACTTGATTCATGAAAATCTTATCAGTATTAATCTGTGTCCAAATACGGCCAATTTTGATCTTTAAATATTAGCTATTTAGCACAATTATTTAAGCATCTTTGAACAGCCCATCTGCCCAAGACTCCAAATTGCATTTAGAAATTACATGTTGACACTAAACCCCAACTataccaatccacctactataCATGCTAGAAttattgatattgattttaATTAACTCCAAATGAAGAATTTTTCAGGTTGGTAAAATGGTACACTCAAATTTACACCCACTCCGACTAGATATGAGTGATCATACATATAATCCGGAAATGAAATTGATGAATAAGGAAATGGTTGTGTTTCTGCCAATTACGTTGTGTTACATTCACTGCTTTTTATCAGCCACTCAGAACACTGGGCTGATGGACAACTCTGGCATAACCAGTCAGCCAATAGGAGACAGTCTGTTACGAGTTTCAGACATGCCTACAATAAACCAGCAAAGCTTATCAGTTCATTTTCTAATGGATACCAATATATCCATGTGAACGAAGCCATATAGTACTGTGCTCACTGAACTACAGGGGAACGAAAAGAGGAAtattataagaaataataatttgctATGTGTATCTTCCAGGCTTTAAGAAATGCCATGCCATTTATCTGTTTTTGTGTCAATAACTGGTCTAATCCTAGACTAAGAAAATGGTCTATAGAGAAACAACTCTTCTGCATGAATTAACCCAAAGCTGAGATTAATACATGTCCAAACACGGTCAATTTTGATATTTGGATATCAGCTATTTGTCTATTCAAATGATTCACAAGCTCTTATTGgtgttacttttttaaataaataattgtaaataaagaTTCAGAAGTTTAGCCACGTGAAAACAGCGTAACAGAGTACAGTTTCTTTGTTTGCTGATGCATAGAAATATTGCCTTTGTACGGTTGTACTAACATGGTCAGGGATTCCCGGAAACTTGACTGTACTCAAGTTTGCCTGTTTTGTTAAGAATTGCACAAACACTGTAGAGTAAGatatatgcaaaaatatttctATGGAATCTAAACAAGTGTATTTGACCAGATTCTTAATGGAGTAGATTTTGAGCTCAcaataatgtcatgttttcacaCATGCTTGCAAGAACCAAAGATAGGAGACTTTTTATGGCCTGCCTTTACATTCGATGTTTTATGACCATATAGGCTTTGTGCCTGATTACAAtaattgtcattttatttatttaagttcttgaaagaaacagaacatccaattttaatataattgaaaaaaaagttcacattaAAGATCAGATGCTGttaattttttgtctttgtacAGAATAAGTTACTAATATATCAGAAAGCCCCgtttatattgtttaaaatgtcactgtattacttttttccccaaaaaataccctaataaaataattaactacaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211632 lncRNA upstream 9335 9782541 ~ 9782746 (+) True G178834
TU211608 lncRNA upstream 41368 9750445 ~ 9750713 (+) True G178817
TU211587 lncRNA upstream 151445 9634759 ~ 9640636 (+) True G178798
TU211578 lncRNA upstream 309161 9482335 ~ 9482920 (+) True G178789
TU211548 lncRNA upstream 459203 9320960 ~ 9332878 (+) True G178763
TU211639 lncRNA downstream 2217 9824446 ~ 9907446 (+) True G178839
TU211918 lncRNA downstream 251589 10073818 ~ 10074017 (+) True G179085
TU212048 lncRNA downstream 434537 10256766 ~ 10260608 (+) True G179212
TU212279 lncRNA downstream 664468 10486697 ~ 10491773 (+) True G179425
TU212280 lncRNA downstream 669804 10492033 ~ 10492469 (+) True G179426
XM_026930794.2 mRNA upstream 17627 9770774 ~ 9774454 (+) True tlnrd1
XM_026930312.2 mRNA upstream 37635 9625189 ~ 9754446 (+) True cemip
XM_026930761.2 mRNA upstream 201744 9546746 ~ 9590337 (+) True abhd17c
XM_026930425.2 mRNA upstream 262841 9418525 ~ 9529240 (+) False arnt2
XM_026930728.2 mRNA downstream 429496 10251725 ~ 10257578 (+) True saxo2
XM_034308925.1 mRNA downstream 637892 10460121 ~ 10479323 (+) True lmnl3
XM_034308924.1 mRNA downstream 637892 10460121 ~ 10479323 (+) False lmnl3
XM_026930793.2 mRNA downstream 659942 10482171 ~ 10483611 (+) True cx36.7
XM_034308892.1 mRNA downstream 733056 10555285 ~ 10563493 (+) True LOC113536420
TU210703 other upstream 1521332 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1521332 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1543993 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1547057 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1548587 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1273924 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1338117 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1338157 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1338157 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1589831 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile