RNA id: XM_026930496.2


Basic Information

Item Value
RNA id XM_026930496.2
length 3511
RNA type mRNA
GC content 0.51
exon number 21
gene id cog4
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 913040 ~ 930102 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgattggctgttttgGTTGGTGGATTAAAAACTAAGAACTAATGGACGAGGTGGATCGGTGTGTGTCACTGAAAAAGTTTCCAACAGATGGTGCCGTGACCCGGATAGAGCTACCTCACCGGACATCACTCCAGACTGAATCTTTTCAGCTGAACCACGATTTGACATGAGTGTGTCCCTTCACCACTACCTCCTCACCATCATCTAAGTGCAAAGCATCATCACAGACACCCTTGAGAGATCGTCAGGAAGGACAAGAGACTCACCCTCTAGACAACTCCTCAGCACTGGCAGAGAAGAATACACTTCAGAGACGTTGGAGTTTCACTGCTAAACTCTGAACCTGGATCCAGCGTATCACTGCTTTAGTCAGACTTGATGACTGCAGCGACCGACCAGCGCGTTCTCTATAAAGAATCCTGCTGAAGAGAATCCAAGTCTCCTGGTCGTCACTGATTTCCAacaggtgccaatactttgcACAAAGCAAGAGATGGGCTGCAGTCGGTGATTATAAACCTGCAGTGTGTACAGAAGTGTGTAAATGGAGGAGTTGATGAAAGGATGAAAGAGTGCAGCTCCAGCGAGGTGTAATTCCTACAGCAGTCAGTAGGGGGCAGTGTGCGCTACAGGAGGCGAAGCGGGGAGGAAGGcgaaggagaagaagaggaagtgaCGTAGTTTGTGTGGATGTGGGAGCTGTGATGGATGAAGTCGGGTCTCCGGCGGTTCGGCGCTCCGGTGCCGCGGCTCTGTCCGCCGTCCGAACCGAAACCATCGAATCCCTCACAGACCTGGAAGACCTGGAGCGGGTTTATTCTCAGCTCTGTGCTGAAGAGGCGGAGGTGCAGAAGGAGTTGGAGGTTCTTTCTGGACAACAGAGCACCATCGAAACCAAGATGCTGGCTCTACAGAGGATcgggcccAACCTGCAGCTGATTGAAGGAGATGCTACACAGTTATCCGGGATGATCAGCTTCACCTGCAGCCTGGCGGAGAACGTCAGCAGCAAAGTCAGACAGCTGGACCTCACTAAGAAAAGGCTGTACCAGGCGATCCAGCGCGCTGATGATATTCTGGATTTGAAGTTCTGCACTGACGGCGTTCAGACCGCCCTCCGCAACCATGACTACGAACAAGCCGCCGCCCACATCCACCGCTACCTGTCTCTCGACCAATCAGTGATCGAGCTGAGCAGGCAGGGCGGAGAGAGCACGGCAGTCGACGCCAGTCTCGCTTTGCTGCAGGAGGCGGAGCTTAGTTTGAAAGCGCTGGTTACGAAGCGACTAGAGGAAGCGGTTGCCACGGGCGACCTGCCTCAGGTGGAACGCTTCTTTAAAATCCTCCCTCTGCTGGGTCTTCATGAGCAGGGACTCGCACAGTTCGCCCAGTACCTCTgcagtcagTTGGCGAGTAAAGCGGAGGAGAACCTGCTCCTGGCTGTGGGTTCTGATGTCAGTGACCGTCGTGCGCCGCTGATCTTCGCCGACACACTCACGCTACTGCTGGAGGgCATCGCTCGGATCGTGGAGACGCACCAGCCCATAGTGGAGACGTACTACGGCCCGGGCCGACtctacacactcctcacacaccttCAGAAAGAGTGTGACGCACAGGCGCAGAAAGTGGTGGAGAAGTTCATCCAGCAGAGAGGCTATCGcaacaaaTTCCAGGTTGTTCAGAGCAGCATGATGAGAGGCGTGTCCACGGAGAAGATCGAGCCGAGagagcttGACCCGGTGTTATGTGAGGTCACCCTGATGAACTCGAGAGCTGAACTGTACCTGCGCTTCCTGAAGCGGCGCATCACGGCAGATTTTGACGTCGCAGACGCAACAGCGGTTGAGTCAGTGATCCGAGAGCACCAGCAGTGTTTGGAGCGATTGCTGAAGGATTGTCAGCTCAGCTGCACCATGCAGGAGCTGATTGGTTACTACATCCCCATGGAGGAATACTACATGAGAGAGACTGTGAATAAGgcAGTCGCCATGGATACAGCCGAGCCGGGTCAGCTGAGCTCCAGCATGGTGGACGACGTGTTTTACATCGTGAAGAAGTGCATCAGCCGAGCGCTGACCAGCGGGAACTCGGACTGCGTGTGCGCGATGATCAATCACGCCATCAGCGTGCTCGAGACGGATTTCAGggaagtGCTGGTGACTAAACTGAGAGCCGGTTATCCAGCCAGCACTCTTCAGGATCTGCATCGTGGTGTCACCAGCGCCGTCAGTCTGATGCAGAGCAGCTTACAGCAGGGAAAAATCCAATCTCTGGGCATCGAGAGTCAGGAACAAGCCAAGACTGCGTACCTGGTGACTCTGAATAACGTGCAGGTCTGCAGTGAGAACATCAGCACTCTGAAAAAGAACCTGGAGAGTGATTGCACCAAGCTGTTCAGTCAGGTGGCGGGTTCAGAGCAAGCTCAGGCTAAGATAGACAGCTGTCTGTCTGACCTGGTGAACACCTCCAGCAAGCTCAAGGATCTCCTCCAGgagggtCTTCAGGAGCTGAATAACACGGCTATCAGACCGCAGGTGAAGCCGTGGATCAGCAGCTTCCTGTCTGTTTCACACAATATCGAAGAGgagGAGTTCAGCGAGTACGAGGCGAACGATCCGTGGGTCCAGCAGCTGGTTGTGCAGCTGGAGCAGCTCATGGCTGAGTTTAAGGTCGGCTTGTCTCCTGTCATCTACGACACGCTGACCAGCCTGATGACCAGCCTGATCGCCATGGAGCTGGAGAAGACCGTCTTTAAATGCACCTTCAGCAGGttggGTGGTCTGCAGTTTGATAAGGAGCTGCGTTCGCTGGTCGCTTATCTCTCCTCCGTCACCTCGTGGACGATTCGGGATAAATTTGCTCGCCTCACTCAGATTGCAACGATCCTCAACCTGGAGAGGGTGTCCGAGATCCTGGATTACTGGGGACCGAATTCGGGGCCCCTGACGTGGCGTCTGACACCGGCCGAGGTTCGACAGGTTCTGGCGCTCAGAGTGGACTTTCGCAGTGAGGACATCAAAAGACTCCGCCTTTAATACAGCCCTGAATCTTACCGCATCGTTTTCAgttatttatgattataataGAAGAAGAAAGGTGAATATAATCAAgggatttcttttcttttttcatttgacTTGATAAGAAGCGTTATTGGGTTTACTGTCATTAAGAGTTGCTGTATCAGTAtgtccatcttttttttttttaatgctcagAAACATCACTTCTAATCATCAGAACCAGTTTtgtagcaaaaaataaataaataaacaaataaaacttctgtttttaaaaaaaaaaaacggagtAAAACTGTTCTGCATTGCACCACTGCCATGATCGATTATATTAACGATTAATCGAGTAAtcgttttttttattcataataaagTTAGACTTAAGTGATATAACATATCATGcttagtgttttaaaaaaaaacagaaatactttattgggaaaaaaataagaaacctTTAAAACGACATAAAATACGTAATAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA upstream 2723 909639 ~ 910317 (+) True G173854
TU205786 lncRNA upstream 90357 815913 ~ 822683 (+) False ccdc102a
TU205783 lncRNA upstream 92900 764340 ~ 820140 (+) False G173823
TU205782 lncRNA upstream 92900 798053 ~ 820140 (+) True G173823
TU205780 lncRNA upstream 122783 762204 ~ 790257 (+) True G173821
TU205830 lncRNA downstream 94385 1024487 ~ 1025616 (+) True G173865
TU205849 lncRNA downstream 203916 1134018 ~ 1134612 (+) True G173880
TU205864 lncRNA downstream 447102 1377204 ~ 1432962 (+) True G173893
TU206003 lncRNA downstream 688131 1618233 ~ 1618745 (+) True G174018
TU206008 lncRNA downstream 698742 1628844 ~ 1629199 (+) True G174023
XM_034308551.1 mRNA upstream 4605 896147 ~ 908435 (+) True dnaaf1
XM_026930339.2 mRNA upstream 18592 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA upstream 18592 852824 ~ 894448 (+) False dok4
XM_034308879.1 mRNA upstream 90317 790374 ~ 822723 (+) True ccdc102a
XM_034308878.1 mRNA upstream 154087 745963 ~ 758953 (+) True LOC117598424
XM_034308552.1 mRNA downstream 6242 936344 ~ 948304 (+) True cenpt
XM_034308457.1 mRNA downstream 19664 949766 ~ 956968 (+) False gfod2
XM_034308461.1 mRNA downstream 19664 949766 ~ 956968 (+) False gfod2
XM_034308458.1 mRNA downstream 19665 949767 ~ 956968 (+) False gfod2
XM_034308459.1 mRNA downstream 19665 949767 ~ 956968 (+) False gfod2
TU205778 other upstream 170330 742021 ~ 742710 (+) True G173819
TU205686 other upstream 342714 568813 ~ 570326 (+) True G173748
TU205870 other downstream 431680 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1128868 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1147975 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2717268 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 3351142 4281244 ~ 4297247 (+) False nadsyn1

Expression Profile