RNA id: XM_026930524.2


Basic Information

Item Value
RNA id XM_026930524.2
length 2572
RNA type mRNA
GC content 0.47
exon number 10
gene id pacsin3
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4656606 ~ 4688578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAGTGGAGCTTGGGTGGAGGGGGGACAAGCTGGTAGACAGGGTACCGTTATCTTTAGCCACACTGCTGCGCCCAAGCTGAGGTAGAGCCTCTCTAACTCTGTTCACGTTAGGACAAGACAAAAGTTCTGTTTATTGTTTGACAGAAAGCCGCAATCATTCCGTGCTGCAAGGGCGACCCCAAAATGTCTTCCAACGGGGACCTGCAAGACGTTGGGAGCTATGACAGCTTTTGGGAGCCGGGGAACTACAAGAGGACAGTGAAACGGGTTGATGACGGCCACAAACTCTGCAACGACTTGATCAGCTGCTTCCAGGAGCGTGCCAAGATCGAGAAGGCCTATTCCCAGCAGCTGAATGACTGGGCCAAAAAATGGAGGGGCGTTGTGGAGAAAGGCCCACAGTATGGCACCCTGGAGAAGGCTTGGCATGCGTTTATGAATGCAGCAGACAAGCTGAGCGAGATCCACATGGAGCTGAAGGAAAAGCTGGTTATGGAGGACAGTGAGAAGATCCGCATCTGGCAGAAGGACGCCTACCACAAGCAGATGATCGGAGGCTTCAAGGAGACCAAAGACGCAGATGAGGGATTCCGAAAGGCCCAAAAACCCTGGGTCCGCAAACTTAAAGAAGTAGAGGCCTCTAAAAAGAGTTACCACCAGGCCCGTAAGGAGGAGCGGACTGCAATGACGCGCGAAACGCACGCCAAGGCTGATTCCACCAAGTCCCCGGAGGAGGTGCGCAAGTTCACGGATCGGGTGGAGAAATGCACCCAGGAGGCAGAGAAGGCAAAGGAGCGCTATGAGAGAGCTCTGGATGAGCTGAACCGCTGTAACCCACGGTACATGGAAGACATGGAGCAGATGTTCGAGATAACCCAAGATGCTGAGAAGAAGCGGCTGTGCTTCTTTAAGGAGGTGATGTTGGATATCCATCAGCATCTGGACCTCTCCACCAGTGAAGGGTTTAAGGCCCTGTACCGAGACCTGGGCCAGACCATTAATACAGCCAGTGACACGGAGGACCTGCGGTGGTGGAGGAACACACATGGACCTGGAATGAGCATGAACTGGCCCCAGTTTGAGGAATGGTCTCCAGAGGCCAACCGCACTATCAGCCGCAAAGAGAGGAACAGCCGAATTGATGATGTCACTTTGACCAACATTGTCTCTGCTGCTGATGAAGCACCTCAGACTCCACAAGATACCACccgTGCTGCCAAAGACTACTCCTCAGATTGGTCTGATGAAGAGAGCCCTAAGAAGTACATAGCAGCGAATGGAGTTGAGcttgaagaggaggaggagaaggtaGTGGGTGTGCGTGTTAGAGCACTGTATGATTACACTGGCCAAGAATCTGATGAGCTGAGCTTTAAAGCAGGTGAAGAGTTGATGAAGTTGGGAGAGGAGGATGAGCAGGGCTGGTGCAAAGGTCAGCTGGAAAGCGGTGAGGTGGGCCTCTACCCTGCTAACTACGTCCAGGTCATTGGCTCTTGATGTCCCACCAAGACCCACCACCTTCCTTGAGAAGGCCATACCATCACTGAACTGATCACACTGAACTGTGCCAGCGGGGCCTGTCTGACGCTATGGAGGCCCTGCCAAGCCATCGCTACATTTACACAGGAACCACAGAAAAAAGCTCACATCTTGTATACTTTGTTGACAGAATAGAGAATTTAGGATCATGGTGCCACGGCCTAACCCATGGCTTTGTGAGAGACTTTACAGGTACAGTGCCTTTTCTGGAAGATTCAAAGGACAGAAATAAAGCAGAGCTGAAGAGTTACAGTACCGTCATCACACTCACCATGCTCAATACAGACTTTTTGCATTTCTAAAGggataaatatatattcttttcaTGGGGCTGCATCTACACTGTCGGAGGTTGCGGGAGATCGGTTTACTCTGATACTTCTGTCTTGTACTTGTGAATTTCAGATATATCAGAAATCACTTCAAGTATTTATTTCAACCAGATCAAGTTGACTGTGTTTTTCTCACAAATGTATGTTGCcgtgtacattttttttctttaacaggtttAGTACTTGAGGACAACTAGGCTGAACTCTTGCTGCACATAGCTATAAATCGCTGTAGGATTCCTGAAAGCATTGGCAGTTTTCTAATCTTTCTTTTAAGCGTGAACACTTAGTTTTGTAGAATAATCTGGATTTGTACAATGCAAGAAATTTAAGGATCAAAATGGGCTCTATAAGACCAGTTAATTCTGACATGTCCTAAAggaatttatatttttgaagCGGAGGATGCTTAAATGGAACAGTTCTTTtagttatgtttttaatttcattttctgtttttaattaaaacattaaagacTCAGACCAATGACTTAGTTGAGGTTATCTGAGCAgcgcatgtgtttgtgtgtgcatatctGTGTTTGCTTGTCTGTACAGACTGTGTGAGTGTCAGAAGATATAAGAATTATTCTGGTTTCCACATCTATGACTGACACATAACTGTAAACCTTCAACTACTGTATCAGCCTATACTAATCAGTGTATACAAtccaaataaacacagatgagCTGGTTAA

Function

GO:

id name namespace
GO:0014028 notochord formation biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208248 lncRNA downstream 23821 4630348 ~ 4632785 (-) True G175967
TU208239 lncRNA downstream 33619 4622128 ~ 4622987 (-) True G175963
TU208186 lncRNA downstream 152285 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 356738 4298977 ~ 4299868 (-) True G175854
TU208017 lncRNA downstream 570413 4083972 ~ 4086193 (-) True G175775
TU208311 lncRNA upstream 62151 4732382 ~ 4736416 (-) True G176015
TU208331 lncRNA upstream 169757 4839988 ~ 4840693 (-) True G176028
TU208332 lncRNA upstream 170517 4840748 ~ 4847141 (-) True G176029
TU208726 lncRNA upstream 439883 5110114 ~ 5113268 (-) True G176336
TU208744 lncRNA upstream 634383 5304614 ~ 5407099 (-) True G176354
XM_026930626.2 mRNA downstream 58833 4587003 ~ 4597773 (-) True zgc:153993
XM_026930757.2 mRNA downstream 115494 4536922 ~ 4541112 (-) True fgf3
XM_026930737.2 mRNA downstream 126879 4524986 ~ 4529727 (-) True fgf4
XM_026930795.2 mRNA downstream 144407 4509420 ~ 4512199 (-) True fgf19
XM_026930851.2 mRNA downstream 152277 4498946 ~ 4504329 (-) True lto1
XM_034308979.1 mRNA upstream 67852 4738083 ~ 4861628 (-) True neo1a
XM_026930860.2 mRNA upstream 237702 4907933 ~ 4919259 (-) True scamp2l
XM_034308991.1 mRNA upstream 253132 4923363 ~ 5032894 (-) False myo9aa
XM_034308996.1 mRNA upstream 253132 4923363 ~ 5032894 (-) False myo9aa
XM_034308995.1 mRNA upstream 253132 4923363 ~ 5032894 (-) False myo9aa
XR_003403708.1 other downstream 556180 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 556755 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 559836 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 561344 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 603839 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 409586 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 469379 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 521733 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 620271 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 643931 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile