RNA id: XM_026930526.2


Basic Information

Item Value
RNA id XM_026930526.2
length 4139
RNA type mRNA
GC content 0.42
exon number 6
gene id plekho2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8596180 ~ 8612306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGGTTCGTGCAAGCTAGCTAGGTTACATCTAAAACCGCATACTAGCATACTATATAGTATGTCAAAACAGTGCGCAGTCCTGCGTGGCGTAGTATTTGATGTACTGTTTAGTGGGGCAGTATGCGGTTTCAGACATAGTCTCATCTGTGGTAGAACTAGAAGCTTTCGTGGGACTTAAACCGGaaaccaaacttttttttccacctcaaaCTTGTTTCGTTGCTGAGttgaaaagaggaaaagggCGATGAGCAGAAGAAGCACGGCGGCGTTACGACGCGCAGTTCCCTCTTTCTCAGCTTCGCATCATGTCGGCTGTGAGAAAGTTGTCAGAAGAAAGAAGTAAATTACCCACATCTGGCCTGAGATAAAGTGTCCGTcgagtgtttttttcttcctctccttcacATAACGGACTCTTAGTGCTTTATCATGGGAGATGATGTTAAAGATGAGCCAGCCAAGCCCAAAGAAACAACATTCAAAGGCAAAGCGGGCTGGTTGAAGAAGTCCTCAGGGAAGTTCCTGGGCAGCTACAAGGACCGCTACATCCAGCTGGACAAAACTGAGATTGCAGTGTATGAAAACGAGGACTTACAGAACTGCGTGGAGCGTCTGGACTTGGAAAACTATGACAAATGCCATGAGTTACGCAGCCCTTTCAAGAAGAAATACAGGCTGATACTGATACGAACGCCCAAGAGTGCGAGTAAGGTCAGTGATGTCAAACTGCAGGCTCAAAATCAGGAAGAGAAAGAAGCTTGGATTAAGGCACTCAGTGATGGCATTAACAGGGCAAAGAATAAAATCTTTGATGAGGTAAAAGTAGATGAAAGTTTATCTTTAGATCATGTAACACGTTCTCGACCGAAAGGAAACCGTGGTAGAAGACCACCAACCAGGATACACATGAAGGAGgctgcaAGCATTTCATCAGATGGAGTCTTGAGACTGGACCTTGACACTGTTGACAATATGCCTAACGGTGCCCACTTCTTATTGGATGGTGCTGATGGAGAAGCCAAAGTGGCTCCAGCTAAATCTCTTGATGATATTGCGGAAGAACCTGCAGGTGAAGATACGGCACCTCAGAAGAAAGTATTGAAGCCACCAATGCCTCCATCAAAGGAGAACAAACCCAGTGAAAGCCAGGACAGTGAGAGCAAACATGAAGAATCTGCCCCACAGAAGAAGATTCTTATGCCACCAATGCCACCATCAAAGGAGCAGAAGCCATCTGAAAATACAGAAGAGGAGAAGGGAAGTGAGGAGGAGACAGTTGTGAAGCCACCCATGCCTCCGTCAAAGGAGAATAAACCCAGAATAAGTGCCAGTGGGGATGCCAGTGAAGACACTGCCACAGAGAATGGTGAGTCCGAAGCAGTTACCACTCCTGGCAAGTCCAGTCCAGTTCAAGGTGAGAAAGATGCTCCTGAAATCGTCCATCCTCCCAGTCCACCATCCAAAGACATGAAACCCAAGCAGGCAATCAGCTTAAGTGATAAAGAAATTCTTTCAGAAGATGATGAAGGTTTTAAAAGTAAGGAAAATGAGGAAGATGAGGCAGAATCAGGTAAGACAGAAGACGAACCATTCATACTCTCAAATAAAGTCCCAAAGCCTCAAGGAGTCATGTGGGATTCACCTTCTTCAGCAGTGGAGAAAAGTTCTGTTGACCAAAATGCTAATAAATCTGCTGAAAGTGTAGTAACTACAGTAACACTTGAACCTGCAAAACCTGCCAATGAACTCAAATTAACTCCACATTCAACTCCAGAGGCTATTAAAAAGAGTGCTGCCCCCCCTGCTCCACCAAAAAAGAAACCTCTTAAACCACCTGTCGTAACAGAGAACCAAGCGGTCCAGGACGACCCTGTGGTCTCAGCTGTGTCATCCTCAGTTGAAAAAGGCTCTGACAATGTGCCATCAGATGAAACAAAACCTGCCACTCAAGAACCAAAAGAAGAGCGTAAGATTGTTATCCTGCGTCTCAGTAATTCAGGAGCAAGTGAGGAACCGGATGATATATCTGGAGTGGAAGCGGAAGTAAAGTCTATAGACAGTGGTCAGCTCTCTGCTGAAGACTCTGAAAGTAGTGAGCAAGTTACGCCATCCACAGATAAGCTGCAAAGTAGTCTGGAAGTCTTAGATGGTGTGACCAGCGAAGAGGAACTGGAGACACCAGACAGCAAGATCCAGAAAATGGAGGATCCACTTTCAGCCATCCTAACTGTTAAGCTCGAAGCCACTATGGATGACTCCATCCCAGTTGCTGCAGAAAGTACATGCACCCCTCAGATCTCCAGCCCTGCTGCATCACTGAACTCCTCCATCAAGAAACGGTCTGCATCCACGGGAGACCTTCTTGAGGAGATGAAGGGCTTGCAAAGTAAAGTGTCCATGGAGCTTGAGGAGACAGGAGAGCTGCTCGGTAAAATAGCACCCAGAGGGTCCCCTGAAGCCGGACAAGACAGCGAGGGGGTAACAGACCCAGAGATCCTTCTTGCTACAGCAATGGAGAAACTTAAGAAAGCTGACGAGTTCCTGAGAGAAGCCAAGAGTTTTAAAGAGCAGGAGAACAAGAGCAATAGAACAAGCTGGTAATTGCAGAAGATAAAAATATTGGGGTAATGTTATGTTAATGGAATTAATGGAATCACAAAACCTACAAATGATCAAGTGCAATTATACCCCATAACTTTTTACACAGGACCACCGCATAGTTAATGGGTCCATCTAAAACTGTTTCATAACCAGGTACCATGGATTAAACTAGGGATCCAATACTGAGTATTGATATCAAACCAACATTGCCCAGAAATGTTGGATCAATGAATCCCTGAATTAAACTTTTAAACGTGATTTATGAGCCCAGTTGATGTACTTGATGACGGAGATTGTGGAAACATAAGCATGACTGCTTCTCAGTGGATGTCAGCTTGTATTCTTGCTTTCAGAATTGTATTCTTTGATGTTTTCTGCACTGGGTTAACATGACGCTTATCCTCATGTCAGTTTGACAGTTTTCAGTTAAAGGCCTCCAGCACTGGTATCCAACTAGCActtaaaattatgattatggTAATTTAATAGAATAGTGTTGCACTCAAGTTTCCCTGCTGTGTTATATGAGCTGTACTACAGTACAGCGCTTAACCACCTTAGAGCATCTTACTTTAGTGTtccacacactatcacacaagCAAGGTCACATGATAATGAACCTAGTGTCAGGTTACTTAGCctgatgttaaaaataatgcagTGGCCTTGTTGAGGTTTTAAGATAAAGTACATGGGAACTAGCAACTTCCTGTGTGATATACATCCTTTTATCCATTTCACAGTTTATACAGAGAGCATACATATTTTCATACTGACAGTGAGAATGCAATTTGAATTCCTCTGCTTATTTCTAATTGGTTACCATATATACCGTATTATGCTAACAGCAATGCTAACTTTCCATTGTCTTTTtaagtgttctttttttaagcGTCAGGGCGTGTGCCATTTTAGTTTGTTATTATCAGTGTTTTTATGTGTAGAAAATGCAGTATGTGATCCAGTTACTCAGTAATAACAACCCCCTTTTTGTATGAAATTCTGGTTatatattaatactttatttttatttcaaacaaaaaaattattagacACGTGAACAGGTCATGTGGTACAGGTCATAGCCCTGCATTTATAGGTGTAGCCTACTTACCAGAACATTGCCGAAACATGATTCAAAGAACCTAAAGTATTTTTCTGTGAGCCTCCACataacatttatagttactttgtGTAGCAATAtattagctctttttttttttttttataaaggatTTCTTTTTGTAAATAACATGTCTACCAATGAATTGCTTAATATTTAAGTTATTAATGTTCTGGCATCCTGGTTCCTGTTTCTAATATCAAATTTACTCAGAGATCCCAGTGTACTGATAAATTATGTTTACCATTAAAACTATAAGAAGATCTATgattatatattgtaatatattgtcAGTGACTGCATTTACTAACTGGACTAATAAGTTTCCTTGATGTCTTTTgtttaatgtgcaaaaaaagatttttaacacACTGCTTGCTAAGCATGTCTTAATAAAAACGTCTTCCCTA

Function

GO: NA

KEGG:

id description
K24022 PLEKHO; pleckstrin homology domain-containing family O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210961 lncRNA downstream 2775 8593186 ~ 8593405 (-) True G178227
TU210939 lncRNA downstream 74095 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 272016 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 320820 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 669122 7926293 ~ 7927058 (-) True G177807
TU211159 lncRNA upstream 98871 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 370912 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 391338 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 574765 9187071 ~ 9189914 (-) True G178673
TU211464 lncRNA upstream 585294 9197600 ~ 9197805 (-) True G178679
XM_026930613.2 mRNA downstream 6828 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA downstream 6828 8572475 ~ 8589352 (-) True ankdd1a
XM_026930548.2 mRNA downstream 31272 8550368 ~ 8564908 (-) False clpxa
XM_026930546.2 mRNA downstream 31273 8550368 ~ 8564907 (-) True clpxa
XM_026930549.2 mRNA downstream 31274 8550368 ~ 8564906 (-) False clpxa
XM_026930411.2 mRNA upstream 195281 8807587 ~ 8924385 (-) True lrrk1
XM_026930283.2 mRNA upstream 314506 8926812 ~ 8950809 (-) True aldh1a3
XM_026930818.2 mRNA upstream 370876 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA upstream 370876 8983182 ~ 8994947 (-) True asb7
XM_026930820.2 mRNA upstream 376856 8989162 ~ 8995120 (-) False asb7
trnar-acg_8 other downstream 348418 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 349405 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 351459 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 353377 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 354002 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 278321 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 910110 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1201586 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2631669 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2796786 11409092 ~ 11415440 (-) False G179803

Expression Profile