RNA id: XM_026930527.2


Basic Information

Item Value
RNA id XM_026930527.2
length 8577
RNA type mRNA
GC content 0.54
exon number 37
gene id sptbn1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6001691 ~ 6084807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctcacgcacacacacacgcgcgcacacacacacacacacacacaggcacacgcacgcgcacgcactGCGGACTCGGAAAGGCGGTGAAGTTCGTCACGTACTCTTCGATAGGGCTTCAGAGGAAGCCGCCCATGAGGAAGTGTGATCATTGAAAAGGCCAAAAGGTGAGAGGTCAGGATGACGACAGTAGCCGCCGAATATGACCACATGGACATCCAGCAGCAGTACCAGGATACTGTCAACAACCGCTGGGATGAGGAGTGGGACAACGAGAACAGTTCAGCCCGCCTGTTCGAGCGCTCACGTATCAAGGCCTTAGCAGATGAGCGTGAGGCGGTGCAGAAGAAGACCTTCACAAAATGGGTCAACTCACACCTGGCACGGGTCTCCTGCCGCATTACAGACCTGTACATGGACCTACGGGATGGACGCATGCTCATCAAGCTCCTGGAGGTGCTCTCTGGAGAGAAGCTGCCCAAACCCACGAAGGGCCGAATGAGAATCCACTGTCTGGAGAACGTGGATAAAGCCCTGCAGTTCCTCAAGGAGCAACGCGTCCACCTGGAGAACATGGGCTCCCATGACATCGTTGATGGCAACCATCGCCTCACGCTCGGCCTCATCTGGACAATCATTCTCCGCTTCCAGATCCAAGACATCAGCGTTGTAACAGAAGACAATAAAGAGAAGCGCTCAGCTAAAGACGCTCTGCTTCTGTGGTGTCAGATGAAGACGGCAGGctatCCAAATGTCAACATCCACAACTTCACCACCAGCTGGCGCGACGGAATGGCGTTCAACGCCCTCATTCACAAACACAGGCCGGATCTTATTGATTTTGACAAGCTGAAGAAGTCCAACGCTCACTACAACCTGCAGAATGCCTTCAACTTGGCTGAGCAGCACCTGGGCCTCACTAAACTGCTGGACCCTGAGGATATCAGTGTGGACCATCCTGATGAGAAGTCAGTCATCACCTACGTCGTCACATACTACCACTATTTCTCCAAGATGAAGGCTCTGAAGGTGGAGGGCAAACGTATTGGAAAAGTGCTCGATAACGCCATTGAAACAGAGAAGATGATTGAGAAATACGAATCTCTTGCGTCAGACCTTCTGGAGTGGATCGAGCAGACCATCATCATCCTGAACAACCGCAAGTTTGCTAATTCTCTGGTAGGAGTCCAGCAGCAGCTCCAGGCCTTCAACACGTACCGCACTGTAGAGAAGCCTCCCAAGTTCACAGAGAAAGGTAACCTGGAAGTCCTTCTGTTCACGATTCAGAGCAAAATGAGAGCCAACAACCAGAAAGTCTACATGCCCAGAGAGGGCAAGCTTATCTCAGACATCAACAAGgcCTGGGAGCGTCTGGAGAAGGCGGAGCATGAGCGTGAGCTGGCCCTGAGGAACGAGCTGATTCGTCAGGAGAAGCTGGAGCAGCTGGCACGCCGCTTCGACCGCAAGGCGGCCATGAGAGAAACCTGGCTCAGCGAGAACCAGCGGCTGGTGTCACAGGACAACTTCGGCTTCGACCTCCAGGCAGTGGAGGCGGCCACCAAGAAGCACGAAGCCATCGAGACGGACATCGCAGCCTACGAGGAACGTGTGCAAGCTGTGGTGGCTGTGGCTAAAGAGCTGGAAGCGGAGAACTACCACGACATCAAGCGCATTGCGGCACGTAAGGACAACGTGCTGCGGCTCTGGGACTATCTACTGGAGCTGCTGAAGGCACGCAGGCAGAGGCTGGAGATGAACCTGGGCGTGCAGCGTGTCTTCCAGGAGATGCTCTACATCATGGACTGGATGGATGAGATGAAGATGCTACTGCTGTCTCAGGACTACGGGAAGCACTTGCTGGGAGTGGAAGATCTGCTGCAGAAACACGCTCTGGTGGAGGCTGATATCGCCATCCAGGCCGACCGCGTGCGGGCCGTCAATTCCACCGCCCAGAAATTCGCTGTTGATGATGAAGGTTACAAGCCGTGTGATCCGCAGGTGATCCGTGATCGGGTGGCTCACCTGGAGTTCTGCTACCAGGAGTTGACGCAGTTGGCGGCTGAGCGACGTGCACGTCTGGAGGAGTCTCGCCGTCTCTGGAAGTTCTTCTGGGAGATGGCTGAGGAGGAGGGCTGGATCCGTGAGAAGGAGCAGATCCTGTCATCAGACGACGTTGGCAAGGACCTGACAGGTGCTGTGCGTTTGCTGAGTAAGCACCGGGCGCTTGAGGACGAGATGAGTGGCCGAGCCGGGCACCTGCAGCACACGTTGCGTGAGGGTCAGGCCATGGCTGACGCCGGACACTTTGGAGAGGCCAAGATCCGCGAGCGCGTGGCTGATGTGCAGGCTCAGTGGGCGGCGCTGGAGCAACTCGCTGCAGTCCGGAAGGCACGTCTAGAGGAGGCCTGCAGCTTGCACCAGTTCCAGGCTGATGCCGATGACGTGGATGCCTGGATGCTGGACGCGCTGCGCATCGTTTCAAGTGACGATGTCGGCCATGACGAGTTCTCCACGCAGGCACTGGTTAAGAAGCACAGGGATGCAGCAGCCGAGGTGGCCAGCTACCGACCCGTGATCGACTCACTCCACGAGCAGGCTCAGGCACTGCCCGATGAGCTGGCTCATTCAGTCGACGTCAGCGGACGCCTGGCGGGCATCGAGGAGCGCTATAAGGAGTTGACAGAGCTCACCCGGCTGAGGAAACAGGCTCTGCAGGATGCACTGGCTCTCTATAAGATGTTCAGTGAGGCTGACGCCTGCGAGGTGTGGATCGACGAGAAGGAGCAGTGGCTCAACAGCATGGAGATTCCAGAGAAACTGGAGGACCTGGAAGTTATTCAGCACAGGTTCGAGAGTCTGGAGCCTGAGATGAATAACCAGGCGTCCCGCGTCGCTGTGGTCAATCAGATCGCCCGGCAGCTGATTCACAGTGGACACCCCAGCGAGAAGGACATCAAGGCTCAGCAGGACAAACTGAACACCAGGTGGAGCCAGTTCAGAGACTTGGTGGACCAGAAGAAGGAGTCCCTGAACTCGGCACTGGGTGTCCAGAACTATCACCTGGACTGCAACGAGACCAAGTCGTGGATCCGCGAGAAGACCAAAGTGATCGAGTCCACTCAGGACCTGGGTAACGACCTGACAGGAGTCATGGCACTGCAGCGCAAGCTGACGGGGATGGAGCGCGACTTGGCCGCCATCGAGGCCAAGCTGGGTGACCTGCGTGGAGAGGCAGAGCGTCTGGCAGCTGAGCATCCTGAACAAGCCAAGGCTATCACGGACAGGCTGGCGGAGATCGGCACCGTCTGGGAGGAGCTGAAGGACACACTGCAAAACCGGGAGGCCTCTCTGGGTGAAGCCAGCAAGCTGCAGCAGTTCCTCCGCCAGCTGGATGACTTCCAGTCGTGGCTGTCTCGCACACAGACGGCCATCGCTTCTGAGGACATGCCCAACACCCTGGCCGAGGCTGAGAAGCTTCTCGCCCAACACGAAGGCATCAAGCACGAGATTGACAACTATGAAGAGGACTACCAGAAGATGCGGGACATGGGCGAGATGGTGACCCAGGGCCAGACGGACGCCCAGCACATGTTCCTAAGGCAGCGGTTGCAGGCGCTGGACACCGGTTGGAATGAGCTGCATAAGATGTGGGAGAACCGTCAGAACCTCCTGTCTCAGTCTCACGCCTACCAACTGTTCCTCAGAGACACTAAGCAGGCCGAGACCTTCCTCAACAATCAGGAATATGTGTTGGCCCACACTGAGATGCCCACCACTCTAGAAGGAGCAGAAGCTGCTATTAAGAAGCAGGAGGACTTCATGACCACAATGGACGCCAACGAGGAGAAGATCAACGGCGTGGTGGAAGCCGGACGCAGACTGGCCAGTGACGGAAACATCAACGCTGAGAAGATTCAGGAGAGAGCAACTTCCATTGATGACAGACATAAGAAGAACCGTGAGGCGGCTGTGGAGCTCCTGATGAGACTTAAAGACAACAGAGACCTACAGAAGTTCCTGCAGGACTGCCAGGAGCTGTCTCTGTGGATAAACGAGAAGATGCTGACGGCGCAGGACATGTCGTACGACGAGGCCAGAAACCTGCACAGCAAGTGGCTCAAGCACCAAGCCTTCATGGCTGAGCTCCAGTCCAACAAAGAGTGGCTGGATAAGATTGAGAAGGAAGGGATGCAGCTGGTATCAGAGAAGCCTGAGACGGAGGCCGTGGTGAAGGAGAAGCTGGCGGTGCTGCAGACGCAGTGGCAGGAGCTGGAGTCCACCACGCAGACCAAAGCGCAGTGCCTGTTCGACGCCAACAAGGCCGAGCTGTTCACGCAGAGCTGCGCCGATCTCGACAAGTGGCTGGCGAGTCTGGAGGGTCAGATCCAATCAGACGACTACGGCAAAGATCTAACCAGCGTCAACATCCTGCTGAAGAAACAACAGATGCTGGAGAACCAGGTGGAGGTGCGTAAGAGGGAGGTAGAGGAACTCCAGTCTCAGGCTCACGTGCTGCGGCAGGAGGGCAAGGACACGGACGAGGTGGATGGGCGGCGTGAGGTGGTGGAGAAGAAGTTCCAGGAGCTGCTCGATCCTCTTCAGAAGAGGAAGAACTTCCTCACGGCTTCCAGGGAGATCCACCAGTTCAACCGTGACGTCGAGGACGAAATTCTCTGGGTTGAAGAGAGGATGCCTCTCGCTACTTCAACAGACCATGGCCACAACTTACAAACTGTTCAGATGCTAATCAAGAAGAACCAGACCCTGCAGAAGGAGATCCAGGGCCACCAGCCACGCTGTGATGACATCTTCGAGCGCAGCCAGAGCATCGTGACTGTGGACAGCCCGAGTGTGGAGGCCATCAGAGCACGTCTTGCTGAGCTACAGGACCTCTGGAACCTCCTCATCCAGGAAACAGCGAAGAGGCACGAGCGGCTGGAAGAGGCCCATCAGGCACAGCAATACTACTTTGACGCAGCCGAGGCGGAGGCCTGGATGAGCGAGCAGGAGCTTTACATGATGTCAGAGGAGAAAGCTAAGGATGAACAGAGCTCTGTGGCCATGCTGAAGAAACACCAGATCCTAGAGCAGGCGGTGGAGGACTACGCCGAGACCGTTCATCAGCTCTCCAAGACCAGCCGCGGTCTAGTGGCTGACAATCACCCTGAGAGTGAGAGAATAGGCATGCGGCAGTCGCAGGTGGATAAGCTGTACGCAGGACTGAAGGACCTttcagaggagaggagaggaaaactGGACGAGAGGTTCCGCCTCTTCCAGCTGAACCGCGAGGTGGACGATCTGGAGCAGTGGATCGCTGAGAGAGAAGTGGTGGCAGGATCTCACGAGCTGGGCCAGGACTACGAGCACGTCACTATGCTGCAGGAGCGTTTCCGTGAGTTCGCCCGCGACACAGGCAACATTGGTCAGGAACGTGTGGACGGTGTAAACCGGATGGCCGATGAGCTCATCAACGCCGGGCATGCTGACGCTGCAACCGTTGCCGAGTGGAAGGACGGGCTTAACGAGGCCTGGGCGGATCTTCTGGAGCTGATCGACACTCGCACGCAGATCCTGGCGGCTTCCTACGAGCTGCATAAGTTCTACCACGACGTCAAAGAGATCCTGAGCCGCATCCTGGACAAGCACAAGAAGCTTCCGGAAGAGCTCGGGCGAGACCAGAACACAGTGGAGGCACTCCAGAGGATGCACACCACCTTTGAACACGACATACAAGCACTGGGGACACAGgtcaggCAGTTGCAGGAAGACGCGACACGTTTGCAGTCGGCGTATGCCGGCGATAAGGCTGACGATATCCAGCGGAGGGAGAGTGAAGTCCTGGATGCATGGCGGAACCTTCTGGAAGCGTGTGAAGGGCGGAGGGCGCGTCTGCTCGACACTGGAGACAAGTTCCGCTTCTTCAACATGGTGCGTGACCTCATGCTCTGGATGGAGGACGTCATCCGCCTCATCGAGGCCCAGGAGAAACCCAGGGACGTGTCCTCTGTGGAGCTGCTCATGAACAACCACCAGGGCATCAAGGCCGAGATCGACGCCCGTAACGACAGCTTCACCGCCTGCATCGAGCTGGGCAAGTCTCTGCTGGCACGCAAACACTACGCATCAGAGGAGATTAAAGAAAAGTTGCTACAGTTGACGGACAAGAGGAAAGAAATGATTGACAAATGGGAGGACAGATGGGAGTGGCTAAGACTGAtTTTGGAAGTGCACCAGTTTTCGCGGGACGCTGGGGTAGCCGAGGCGTGGTTGCTGGGTCAGGAGCCGTACCTGTCCAGTAAGGAGGTGGGTCAGAGTGTGGACGAGGTGGAGAAGTTGATCAAGAGGCACGAGGCATTCGAGAAGTCAGCCGCTACCTGGGAGGAACGCTTCTCTGCTCTGGAGAGGCTGACTACGCTGGAGTTACTGGAAGTGAGAAGAAGgcaagaagaagaggaaagaagaagaaaacctCCGACGCCAGAGCCGGAGCAGGAGATCGAGCCACAGCAGAGAGAAGGAGAGCAGATCGCTCAGAACGGACTGCCGTCAGACCAGGAATCCCCACGGGACGGAGTGGACGGAGAAATCGTGAACGGCGTGCCTGAGAGGAGCTCTAAGGAGCCGAGTCCCGTCCCGTCCCCGAGCTCAGGCAGACGCGCTAAGGGCAGCCAATCGTCCACCCTGCCAGCCAAAAGTCAGGAGTCTCCCTCCGCCCAGCTGGAGGGCTTCCTTCACCGCAAGCATGAGTTTGAGGGCCACAACAAGAAGGCATCCAACAGGTCCTGGCATAACGTGTACTGCGTTATCAACAACCAAGAGATGGGCTTCTACAAAGACAACAAGAACGCCGGGCAGGGCATCCCGTACCACAACGAGATCCCCGTCAGCCTGAAGGACGCCGTCTGCGAGGTGGCCGTCGActacaagaagaagaagcacgTCTTCAAACTGAGAGTGACAAACGGAAACGAGTATCTCTTCCAAGCCAAAGATGATGAGGAGATGAACACATGGATGCAGGCTATTCAGAATGCAGTCAGTGGCTCCTCCCCTTCAGACAAGTCTGACGTTACGCCTAGCAACCAGAGCACTCCTGCCTCCAGCCGCGCCCACACACTACCGGCAACTGTCACCTTGACGACCGAGTCGAGCCCGGGCAAGCGGGAGAAGGACaaggagaaagacaaagagaagcGTTTCAGTCTCTTCAGCAAGAAGAAGCAGTAGAGGCCAGTTCCCCTAGCAGCAGAGACATCCCGTTCCTTGCTTTCATCaaatttgtctttttatctcttctttactttctctcttaccttctctctctctgtctctgtttctctctctctctctctctctctttcctatCTGTTCACCTCATGTGATATTCCAGCATGCAAGCCGAAGAGCGAATACGCCACACTCTGTGCCTGAAGTCCCTCTGATCGGGTTCCAAAgttacatagaaaaaaaaattatgattaaaaaaaaattctcaaaaaaaaaaggaaagattttTAGCTTGGGTGTGTCATGGGTCAGGTTTGGAAATTCCGAGGATCAGATGTGTCTTTTTACTTCGTTCTGTTTCTATTGTCTTTCAATTTTAAAGCTATGattttaattattgattatgaATATCACTCTTTTACGTAACCGTGACGTTCAGATGGgttggttatttaaaaaaaaaaacgctttcCTCAATTTTGTGAGGCTGTCTCAGAGGGATGCGCGcattctttctgttctttcctgTCGGGGAGCAAGACGGTGACGCTTGACGAAATCGATTCCACTGTGCGATTCCAGTCTGAACCTGAATCTGACATTTCCATATGAAGGAACCTTCGCTAAAATTCCATTCGCTTCTATAGTTGCCATGTTGGCCAAACCTGCCTTTTAACAATTCCAGGCTGTAAAGCCTTAGAACTCCACGCTAATATGAAGGTCGATTAACATTTGCTTGTCGTGTGTCCTTTATTAAAACCACATATTTTTTTTGACCTGTAAGAATGTTATATGCTATATGAAAAAAGtactccttttattttttatttttacattttccttcctttctttattttgtttttttttttcacttctgttGAGTTGCATCATAATATATGTTTCAAATAATTCTAGTACAGAGTATTGAAAAACTAGCTGTATTATAAACACTCTATAGCATCGATGTTAAGTGGAAAGTGGAGCTCGAGCATTTACTGGAATAAAAACGGTAAAgttactcaaaaaaaaatggTCGCTTGCTTGTTGGctatatgattttctttttttggctaCATTATACCGCTATTTGATACATAGTGTGCATTTCTCTGtcactgtatgtaatgtaatgaagaaacaaaaaagaaaatcatctACTGCACAATCAGAAATAGCATAATAGGAATGAAATCCTTTTGCAGCATCAGGGCTGGTGAGGGCGTATAGTAACCTCATTATAGTCCGACTGTATGAAACTGCACCTGTAGACCTTTTACCCCTCTCTGTTAAATATGTGCGATGtcattaaaatgcttttaaacatTACCACA

Function

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 286671 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 594592 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 888423 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1154550 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 1160998 4839988 ~ 4840693 (-) True G176028
TU209304 lncRNA upstream 87391 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 99528 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 175990 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 272767 6357574 ~ 6358087 (-) True G176938
TU209473 lncRNA upstream 373559 6458366 ~ 6459631 (-) True G176959
XM_034308420.1 mRNA downstream 3554 5949048 ~ 5998137 (-) False eml6
XM_034308419.1 mRNA downstream 3554 5949048 ~ 5998137 (-) True eml6
XM_026930297.2 mRNA downstream 72562 5924209 ~ 5929129 (-) True LOC113536410
XM_026930734.2 mRNA downstream 143365 5854377 ~ 5858326 (-) True rbbp9
XM_026930587.2 mRNA downstream 157848 5830751 ~ 5843843 (-) True srsf11
XM_034308409.1 mRNA upstream 865 6085672 ~ 6094778 (-) False LOC113536414
XM_034308408.1 mRNA upstream 865 6085672 ~ 6094761 (-) True LOC113536414
XM_026930301.2 mRNA upstream 865 6085672 ~ 6094760 (-) False LOC113536414
XM_026930304.2 mRNA upstream 15222 6100029 ~ 6109372 (-) False LOC113536415
XM_026930303.2 mRNA upstream 15222 6100029 ~ 6109344 (-) True LOC113536415
TU209010 other downstream 293426 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 293426 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 687437 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 711097 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 804873 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1396642 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1495627 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1495627 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1495627 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1495627 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile