RNA id: XM_026930529.2


Basic Information

Item Value
RNA id XM_026930529.2
length 2177
RNA type mRNA
GC content 0.51
exon number 17
gene id aspscr1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7018805 ~ 7055924 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTGTTTCAAACAAACACGTTGACGTCATTTTGCAATGGCAGCCAGCAGTATAGCAGTGTCGGTTCTTGCTCCAAATGGACGAAGACAGACCGTAAAAGTCTCCCCAAACACACCCCTGCTTCAGGTTCTCGAGGAAGTGTGCAAGAAACAAGGATTTAATCCAGATGACCACGGACTGAAGTTTCAGAGGAATGTGCTGGACCTGACGCTGCAGTGGAGGTTTGCCAACCTGCCAAATAATGCCAAGTTGGAGGTAGTGCCAAGCACCCGGCAGCGTGGGGGGGCAGACAGCACGGTCCGGATTGCACTACAATTAGAGGAAGGATCTCGTCTCCAGGGATCTTTCTCTAGCGGCCAGAGCCTATGGGATCTGCTCGGCCACTTCCCCGAAACCAGGATATCTGAACTGGACGTGCCAGGAGCCACACCAGTCTGTGTTTACATGAGAGATGAGGTCAGTGGAGAGGAGGCTCTTAAGAGGACCACTCTGAGGTCTCTGGGCCTGACTGGTGGAAGTGCCATACTGAGGTATGTGCTGAAAGCGAGTAACACTCCAGGGAACAATGAGCCCATGGAGACAGCTACCACACCTAATGACACAGCTGCCCCTGCATCCCAGCCTCTTCCTGCTGTTAACACCATGCACTCTGATCTGCCAGATGAGCCCATACCTGCCCCAGTGCCCATGGAAAACACTAGTCCACCCTCTCAGACCCCCGAAGCTGCTGACCAAACATGCCAAACACTTCCTGTACAACAGGAACAGGCAGAGCCGTCTCAAGACCAGCATCAAGTTGTGCGGCCCAAAATCAGGCAAGCTAATATTCAGATGCCTCAGGAGGCCAGTTCCATGCAACAAGTGGATGAAGAGCAAGCAGGGCCATCCCACAAATATCATTCCCACTCAACCACACCCAGCAACTTTGTGCCTTTCTCTGGTGGTGGGCAGAGGCTTGGAGGATCTGGAGGTGATGAACAGAGAGAGTGCCCTTCACCAGCATCGTCCTCTTCCTCACCACTCTCCAGTGGGCCTCCAAAAGCCAAGAAGGCCAAACCGAGCCATGAAGTCCAGCGTTCTTCTAGTGCCACATGCAGAGCAAAAGATTCGGAGGATGCAGAGGAATATCTGGAGCCAGTGGACAGGGAACCGCTTGTCTTCCACCTGGACACAGCAGCACAGCGGCAGCGTGATGACCGGGAGCTGCCAGACGAGTTCTTTGAGGTGACAGTGGATGATGTGAGGAAGAGGTTCTCACAGCTGAagagtgagaggAGGGCGTTGGAGGAGGCTCCTCTGATGACTCAGTCTTTGAGGGAAGctcagaagaaagagaagatggATAGGTATCCCAAGGTGGTGCTGAGAATTCAGTTTCCTGACAGACTCGTCCTCCAGGGCTTTTTTAGACCACTAGAAACAGTCGCTGTACTGAAGCAGTTTGTAAGGACTCATCTACAGGATCCCGAGCTCCCCTTCTACCTATTCATTGCCCCTCCTAAAACCAAGCTGGACGACCCCAGCGCTACTCTGTTTCAGGCAAACCTCTTCCCTGCTGCTCTCGTGTACTTTGGCTCTGATGTGAAGACAGagTGCTATTTGCGCCGTGATCTTGTGGACGGCATTGTCTCTGCCCTGCAGGCTGATGAGCTCATAGCTGGCTGTATGCCCAGGTCTCCAGCTCCTTCCTCCAGTTCACTGCCCCCTGAGGATTCTCTCAATCTGCACACCGATTCTAATGGAGCTCCCAGGAGccaggagaacccagaggaccCCAGTGATGAGCAAAGCCAAGCACCCAAACCTGTTCGCACAGACCCTGCAAAAGTGCCCAAGTGGCTCAAGCTGCCAGgaaagaAGTAACAACCATGGAGTCACTAGATGTTTAAGAAGAGGACTGGAGACTGGCTTCCTCAGTAGGCAAATTCTTCGAGGGCCCTTGTTGAtgtcaataacaaaaacaagatgTTGAAAGCACATAGCTGCCAATGCAAATAGAGCCAGCCCTATAGTTCTGTGGTGATTAATGAGATGTTCATTAAAGCTGAAGTGTCAGTTGCCAGTGATTACCACTGTTGTTTGTATTCTTGAAAGCAGTTTTCCCAAATGTATTAGGATCAATTACATACTGAGTAAACTTCAGATAAAACAGTGCATTTCTTGAATGCAGTACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209925 lncRNA downstream 159316 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 280197 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 429509 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 429509 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 467223 6551325 ~ 6551582 (-) True G176991
TU209973 lncRNA upstream 7149 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 86246 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 104845 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 216178 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 238502 7289885 ~ 7290092 (-) True G177455
XM_026930786.2 mRNA downstream 7290 7009298 ~ 7011515 (-) True LOC113536680
XM_026930885.2 mRNA downstream 23237 6988303 ~ 6995568 (-) True pycr1b
XM_026930342.2 mRNA downstream 39329 6961636 ~ 6979476 (-) False mafgb
XM_026930343.2 mRNA downstream 39698 6961636 ~ 6979107 (-) True mafgb
XM_026930692.2 mRNA downstream 64061 6940768 ~ 6954744 (-) True si:ch73-100l22.3
XM_026930612.2 mRNA upstream 28117 7079500 ~ 7108209 (-) False tmc6b
XM_026930610.2 mRNA upstream 28117 7079500 ~ 7108177 (-) False tmc6b
XM_026930611.2 mRNA upstream 28117 7079500 ~ 7108177 (-) True tmc6b
XM_026930690.2 mRNA upstream 99296 7150679 ~ 7154709 (-) True tk1
XM_026930727.2 mRNA upstream 128825 7180208 ~ 7190834 (-) False ogal
TU209010 other downstream 1310540 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1310540 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1704551 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1728211 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1821987 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 430066 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 529051 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 529051 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 529051 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 529051 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile